diff options
| author | Hugo Buddelmeijer <hugo@buddelmeijer.nl> | 2025-09-26 22:12:08 +0200 |
|---|---|---|
| committer | Sharlatan Hellseher <sharlatanus@gmail.com> | 2025-09-28 22:56:55 +0100 |
| commit | 521e1bd140cbb5aed07548b3a32aa2fa12ba889e (patch) | |
| tree | 26085e7dfa58d676258c4a4736eb69624c013f8c | |
| parent | 5ea8115afe1bdff7a87925ab228da1aef498f430 (diff) | |
gnu: python-pyjanitor: Fix build.
* gnu/packages/python-science.scm (python-pyjanitor): Fix build.
[propagated-inputs]: Add python-requests.
[native-inputs]: Remove python-wheel.
[arguments] <#:test-flags>: Disable failing test.
Change-Id: I74b40149a3b87f0e748d79be2aae9978fa18de52
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| -rw-r--r-- | gnu/packages/python-science.scm | 40 |
1 files changed, 24 insertions, 16 deletions
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 7b4c7cdfe5..2065171b90 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -3930,19 +3930,25 @@ production-critical data pipelines or reproducible research settings. With ;; marked turtle can be skipped using "-m" "not turtle". (arguments (list - #:test-flags '(list - "-n" (number->string (parallel-job-count)) - ;; Tries to connect to the internet. - "-k" (string-append "not test_is_connected" - ;; Test files are not included - " and not test_read_commandline_bad_cmd") - ;; Test files are not included - "--ignore=tests/io/test_read_csvs.py" - ;; Polars has not been packaged yet. - "--ignore=tests/polars" - ;; PySpark has not been packaged yet. - "--ignore=tests/spark/functions/test_clean_names_spark.py" - "--ignore=tests/spark/functions/test_update_where_spark.py") + ;; tests: 1042 passed, 2 skipped, 2 deselected, 45 xfailed, 6 xpassed, + ;; 735 warnings + #:test-flags + ;; The tests take quite long, so consider adding the "-n" line and + ;; adding python-pytest-xdist to the native-inputs when testing. + ;; However, the tests are not deterministic when ran with -n, so + ;; disable again before committing. + #~(list ;; "-n" (number->string (parallel-job-count)) + ;; Test files are not included. + "--ignore=tests/io/test_read_csvs.py" + ;; Polars has not been packaged yet. + "--ignore=tests/polars" + ;; PySpark has not been packaged yet. + "--ignore=tests/spark/functions/test_clean_names_spark.py" + "--ignore=tests/spark/functions/test_update_where_spark.py" + ;; Tries to connect to the internet. + "-k" (string-append "not test_is_connected" + ;; Test files are not included. + " and not test_read_commandline_bad_cmd")) #:phases #~(modify-phases %standard-phases (add-before 'check 'set-env-ci @@ -3950,20 +3956,22 @@ production-critical data pipelines or reproducible research settings. With ;; Some tests are skipped if the JANITOR_CI_MACHINE ;; variable is not set. (setenv "JANITOR_CI_MACHINE" "1")))))) + ;; TODO: Remove python-requests and inject its target data to make the + ;; package behaviour reproducible. (propagated-inputs (list python-multipledispatch python-natsort python-pandas-flavor + python-requests python-scipy ;; Optional imports. python-biopython ;biology submodule python-unyt)) ;engineering submodule (native-inputs (list python-pytest - python-pytest-xdist + ;;python-pytest-xdist ;only for -n when testing + python-setuptools ;; Optional imports. We do not propagate them due to ;; their size. python-numba ;speedup of joins - python-setuptools - python-wheel rdkit)) ;chemistry submodule (home-page "https://github.com/pyjanitor-devs/pyjanitor") (synopsis "Tools for cleaning and transforming pandas DataFrames") |