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| author | Ricardo Wurmus <rekado@elephly.net> | 2025-03-18 14:07:57 +0100 |
|---|---|---|
| committer | Andreas Enge <andreas@enge.fr> | 2025-04-16 11:46:16 +0200 |
| commit | 7ff7963cd9c39a71c7c72ca8634f2f83c547aa88 (patch) | |
| tree | 6b936863dc6ddc570b13b3f1a24db7ff76fea26c | |
| parent | 62853330ed09a3f257073efd7eae1a846f10831d (diff) | |
gnu: snakemake-6: Disable one more test.
* gnu/packages/python-xyz.scm (snakemake)[arguments]: Disable test_lint test;
replace custom 'check phase with 'pre-check phase.
Change-Id: I9631383ab6160ee8a234145515bbf198b54b1e57
| -rw-r--r-- | gnu/packages/python-xyz.scm | 17 |
1 files changed, 9 insertions, 8 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 0a76cd2163..e9289b4690 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -15334,6 +15334,13 @@ Python style, together with a fast and comfortable execution environment.") (build-system pyproject-build-system) (arguments (list + #:test-flags + '(list + ;; This test attempts to change S3 buckets on AWS and fails + ;; because there are no AWS credentials. + "--ignore=tests/test_tibanna.py" + ;; Unclear failure. + "-k" "not test_lint[long_run-positive]") #:phases #~(modify-phases %standard-phases ;; For cluster execution Snakemake will call Python. Since there is @@ -15360,14 +15367,8 @@ Python style, together with a fast and comfortable execution environment.") (substitute* '("snakemake/_version.py" "versioneer.py") (("0\\+unknown") #$version)))) - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (setenv "HOME" "/tmp") - ;; This test attempts to change S3 buckets on AWS and fails - ;; because there are no AWS credentials. - (delete-file "tests/test_tibanna.py") - (invoke "pytest"))))))) + (add-before 'check 'pre-check + (lambda _ (setenv "HOME" "/tmp")))))) (propagated-inputs (list python-appdirs python-configargparse |