diff options
| author | Sharlatan Hellseher <sharlatanus@gmail.com> | 2025-03-26 21:58:22 +0000 |
|---|---|---|
| committer | Andreas Enge <andreas@enge.fr> | 2025-04-16 11:46:22 +0200 |
| commit | 8afbc6f9acb274d0b0adcfdfba0ee5a0114afb7e (patch) | |
| tree | da557820189978e776977067a5ab5ea5b12f87a3 | |
| parent | 18a2ef9c6276e82a6a82bec1b41519feda6ee76f (diff) | |
gnu: python-peaks2utr: Update to 1.4.1 and fix build.
* gnu/packages/bioinformatics.scm (python-peaks2utr): Update to 1.4.1.
[arguments] <test-flags>: Skip 2 more similar failing test.
<phases>: Add 'relax-requirements.
Change-Id: Ia26903116915c4ef031b4a6bdb5dae64d109a1f4
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 18 |
1 files changed, 14 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d25e2aec4f..2f8205cdb9 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3306,19 +3306,29 @@ encountered in PDB files prior to simulation tasks.") (define-public python-peaks2utr (package (name "python-peaks2utr") - (version "1.2.0") + (version "1.4.1") (source (origin (method url-fetch) (uri (pypi-uri "peaks2utr" version)) (sha256 (base32 - "1idp9cgwqxvryf4qqrc1xjsamfqn3jmr56kmjp2h1ysmckwmhw4v")))) + "104il0kk61q07b58g9xrss7xflwlbx4kzsmw9iih99lhfsii0wzg")))) (build-system pyproject-build-system) (arguments (list #:test-flags - ;; These two tests fail because file names are not URLs. - '(list "-k" "not test_annotation.py"))) + ;; These tests fail because file names are not URLs. + '(list "-k" (string-join + (list "not test_forward_strand_annotations" + "test_matching_chr" + "test_reverse_strand_annotations") + " and not ")) + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "setup.cfg" + (("==") ">="))))))) (propagated-inputs (list python-asgiref python-gffutils |