diff options
| author | Lars-Dominik Braun <lars@6xq.net> | 2023-05-11 08:33:02 +0200 |
|---|---|---|
| committer | Lars-Dominik Braun <lars@6xq.net> | 2023-08-02 12:18:20 +0200 |
| commit | 70baccd8068f35ff8dce0955eaea60f7ea9c240e (patch) | |
| tree | e70161b089f7043d97e1c28dc599b639bb8409d9 | |
| parent | 5aceacac65784bd2e1fd12304f965ae6026de49d (diff) | |
build-system/pyproject: Use python-sans-pip-wrapper as default-python.
Also adds python-setuptools and python-wheel to relevant packages,
either to native-inputs or to propagated inputs if the pkg_resources
Python module is loaded at runtime.
* guix/build-system/pyproject.scm (default-python): Default to
python-sans-pip-wrapper.
38 files changed, 516 insertions, 227 deletions
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm index fa697b79fb..75b8c9f2f1 100644 --- a/gnu/packages/admin.scm +++ b/gnu/packages/admin.scm @@ -4848,7 +4848,7 @@ LUKS volumes encrypted with the user's log-in password.") (lambda _ (substitute* (find-files "tests" "^test.*\\.py$") (("America/Los_Angeles") "PST8PDT"))))))) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-pygments python-ruamel.yaml python-xmltodict)) (home-page "https://github.com/kellyjonbrazil/jc") diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 5b9434fb33..8fc727e0d6 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -521,7 +521,8 @@ in FITS files.") (propagated-inputs (list python-astropy python-matplotlib python-numpy python-scikit-learn python-scipy)) (native-inputs (list python-pytest-astropy-header python-pytest-cov - python-pytest-doctestplus python-pytest-remotedata)) + python-pytest-doctestplus python-pytest-remotedata + python-setuptools python-wheel)) (home-page "https://astroml.org") (synopsis "Tools for machine learning and data mining in astronomy") (description "This package provides tools for machine learning and data @@ -613,7 +614,8 @@ CFITSIO library. Among other things, it can ;; XXX: we don't have supersmoother " and not test_supersmoother.py")))) (propagated-inputs (list python-astroml python-numpy python-scipy)) - (native-inputs (list python-pytest python-nose python-setuptools-scm)) + (native-inputs (list python-pytest python-nose python-setuptools-scm + python-setuptools python-wheel)) (home-page "https://github.com/astroml/gatspy") (synopsis "General tools for astronomical time series in Python") (description "This package provides general tools for astronomical time @@ -1470,7 +1472,9 @@ astronomy and astrophysics.") (list python-extension-helpers python-hypothesis python-pytest-astropy - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (propagated-inputs (list python-astropy python-numpy)) (home-page "https://github.com/astropy/astropy-healpix") @@ -1553,7 +1557,9 @@ to access online Astronomical data. Each web service has its own sub-package.") python-pytest-astropy python-scikit-image python-scipy - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (propagated-inputs (list python-astropy python-numpy)) (home-page "https://github.com/astropy/astroscrappy") (synopsis "Speedy Cosmic Ray Annihilation Package in Python") @@ -1651,7 +1657,9 @@ bad pixel tracking throughout the reduction process.") python-pytest python-pytest-cov python-pytest-remotedata - python-xarray)) + python-xarray + python-setuptools + python-wheel)) (home-page "https://github.com/MAVENSDC/cdflib") (synopsis "Python library to deal with NASA's CDF astronmical data format") (description "This package provides a Python @acronym{CDF, Computable @@ -1741,7 +1749,9 @@ provide related services.") (list python-astropy python-pytest python-pytest-cov - python-pytest-mypy)) + python-pytest-mypy + python-setuptools + python-wheel)) (home-page "https://github.com/poliastro/czml3") (synopsis "Python library to write CZML") (description @@ -1818,9 +1828,10 @@ used with local NetDRMS sites.") ;; Cython extensions have to be built before running ;; the tests. (invoke "python" "setup.py" "build_ext" "--inplace")))))) - (propagated-inputs (list python-astropy python-numpy)) + (propagated-inputs (list python-astropy python-numpy python-setuptools)) (native-inputs (list python-coverage python-flake8 python-pytest - python-pytest-cov python-setuptools-scm)) + python-pytest-cov python-setuptools-scm + python-wheel)) (home-page "https://github.com/spacetelescope/drizzle") (synopsis "Astronomical tool for combining dithered images into a single image") @@ -1871,7 +1882,8 @@ of dates.") (arguments (list #:tests? #f)) ; Requires HTTP(S) access to api.beta.helioviewer.org (propagated-inputs (list python-pydantic python-requests)) - (native-inputs (list python-pytest python-pytest-astropy)) + (native-inputs (list python-pytest python-pytest-astropy python-setuptools + python-wheel)) (home-page "https://helioviewer.org/") (synopsis "Helioviewer Python API Wrapper") (description "@code{hvpy} is a Python API wrapper around the formal @@ -1892,7 +1904,9 @@ of dates.") (native-inputs (list python-pytest python-pytest-mpl - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (propagated-inputs (list python-astropy python-matplotlib @@ -2039,7 +2053,9 @@ Low-Earth Orbit (LEO).") python-pytest python-pytest-astropy python-sphinx - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://poppy-optics.readthedocs.io/") (synopsis "Physical Optics Propagation in Python") (description @@ -2069,7 +2085,8 @@ interest, and which require portability between platforms or ease of scripting." (base32 "17acv1yhz1jrsx9f35nr1vg276ibaivh4i243qkmp6abzvfyg907")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest-astropy python-requests-mock python-setuptools-scm)) + (list python-pytest-astropy python-requests-mock python-setuptools-scm + python-setuptools python-wheel)) (propagated-inputs (list python-astropy python-mimeparse python-pillow python-requests)) (home-page "https://github.com/astropy/pyvo") @@ -2405,8 +2422,9 @@ spherical polygons that represent arbitrary regions of the sky.") ;; the tests. (invoke "python" "setup.py" "build_ext" "--inplace")))))) - (propagated-inputs (list python-numpy python-scipy)) - (native-inputs (list python-pytest python-setuptools-scm)) + (propagated-inputs (list python-numpy python-scipy python-setuptools)) + (native-inputs (list python-pytest python-setuptools-scm + python-wheel)) (home-page "https://github.com/spacetelescope/stsci.image") (synopsis "Image array manipulation functions") (description @@ -2456,7 +2474,8 @@ task}.") #:tests? #f)) (propagated-inputs (list python-numpy)) (native-inputs (list python-codecov python-pytest python-pytest-cov - python-setuptools-scm)) + python-setuptools python-setuptools-scm + python-wheel)) (home-page "https://stscistimage.readthedocs.io/en/latest/") (synopsis "STScI image processing") (description "This package provides an astronomical Python package with @@ -2486,7 +2505,9 @@ image processing functions: @code{xyxymatch}, @code{geomap}.") python-pytest-cov python-pytest-doctestplus python-pytest-openfiles - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://github.com/spacetelescope/stcal") (synopsis "STScI tools and algorithms used in calibration pipelines") (description "STScI tools and algorithms used in calibration pipelines.") @@ -3296,7 +3317,9 @@ functions, so that they can be called with scalar or array inputs.") (native-inputs (list python-cython python-pandas - python-pytest)) + python-pytest + python-setuptools + python-wheel)) (propagated-inputs (list python-h5py python-matplotlib @@ -3328,9 +3351,10 @@ N-Chilada and RAMSES AMR outputs.") (setenv "PYSYN_CDBS" (string-append #$output "/crds"))))))) (native-inputs (list python-pytest python-pytest-remotedata - python-setuptools-scm)) + python-setuptools-scm python-wheel)) (propagated-inputs (list python-astropy python-beautifulsoup4 python-numpy - python-pytest-astropy-header python-six)) + python-pytest-astropy-header python-six + python-setuptools)) (home-page "https://github.com/spacetelescope/pysynphot") (synopsis "Python Synthetic Photometry Utilities") (description @@ -3396,7 +3420,7 @@ datetime object.") #:tests? #f)) (propagated-inputs (list python-astropy python-numpy python-scipy)) (native-inputs (list python-pytest python-pytest-astropy - python-setuptools-scm)) + python-setuptools-scm python-setuptools python-wheel)) (home-page "https://github.com/spacetelescope/synphot_refactor") (synopsis "Synthetic photometry using Astropy") (description @@ -3467,7 +3491,9 @@ between image and reference catalogs. Currently only aligning images with python-pytest-openfiles python-pytest-remotedata python-semantic-version - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (propagated-inputs (list python-asdf-standard python-asdf-transform-schemas @@ -3514,7 +3540,9 @@ implementation of the ASDF Standard.") python-pypa-build python-pytest python-packaging - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (propagated-inputs (list python-importlib-resources)) (home-page "https://asdf-standard.readthedocs.io/") (synopsis "ASDF standard schemas") @@ -3542,7 +3570,7 @@ up-front for extensibility.") (arguments ;; Dependency cycle with python-asdf (list #:tests? #f)) - (native-inputs (list python-setuptools-scm)) + (native-inputs (list python-setuptools-scm python-setuptools python-wheel)) (propagated-inputs (list python-asdf-standard python-importlib-resources)) (home-page "https://github.com/asdf-format/asdf-transform-schemas") (synopsis "ASDF schemas for transforms") @@ -3661,7 +3689,7 @@ install an implementation package such as asdf-astropy.") (arguments ;; Dependency cycle with python-asdf (list #:tests? #f)) - (native-inputs (list python-setuptools-scm)) + (native-inputs (list python-setuptools-scm python-setuptools python-wheel)) (propagated-inputs (list python-asdf-standard python-importlib-resources)) (home-page "https://asdf-unit-schemas.readthedocs.io/") (synopsis "ASDF serialization schemas for the units defined by @code{astropy.units}") @@ -3903,9 +3931,10 @@ orbit around the Earth.") (base32 "0x6p5z6a2cqinckwlpinjxagvmswl149s1jn6ihmdxk4k0h8rrz0")))) (build-system pyproject-build-system) - (propagated-inputs (list python-numpy python-scipy)) + (propagated-inputs (list python-numpy python-scipy python-setuptools)) (native-inputs (list python-codecov python-pytest python-pytest-cov - python-pytest-doctestplus python-setuptools-scm)) + python-pytest-doctestplus python-setuptools-scm + python-wheel)) (home-page "https://github.com/spacetelescope/wiimatch") (synopsis "Optimal matching of weighted N-dimensional image intensity data") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d1448e390f..e6ba3e561a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1401,7 +1401,8 @@ intended to behave exactly the same as the original BWK awk.") (base32 "1pm1szyxabhn8jismrj9cjhf88ajgcmm39f0cgf36iagw5qakprl")))) (build-system pyproject-build-system) - (propagated-inputs (list python-biopython python-six)) + (propagated-inputs (list python-biopython python-six python-setuptools + python-wheel)) (native-inputs (list python-pytest)) (home-page "https://github.com/chapmanb/bcbb/tree/master/gff") (synopsis "Read and write GFF files with Biopython integration") @@ -1526,7 +1527,7 @@ from bokeh.util.dataclasses import entries\n")) python-tornado-6 python-tqdm python-umap-learn)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/LooseLab/bulkVis") (synopsis "Interactive visualization of bulk RNA-seq data") (description @@ -1765,7 +1766,8 @@ biological activities from omics data within a unified framework.") python-scikit-learn python-scipy python-seaborn)) - (native-inputs (list python-cython python-setuptools-scm)) + (native-inputs (list python-cython python-setuptools-scm + python-setuptools python-wheel)) (home-page "https://github.com/lilab-bcb/demuxEM") (synopsis "Analyze cell-hashing/nucleus-hashing data") (description @@ -1838,6 +1840,7 @@ from single-cell RNA-sequencing.") python-numpy python-pandas python-scipy)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/SegataLab/hclust2/") (synopsis "Plotting heat-maps for publications") (description @@ -1857,7 +1860,7 @@ to produce high quality figures that can be used in publications.") "111q4pzkav26aa3hkgh948wqlyrq7dq6sjml9z63n3blw8s6b0c4")))) (build-system pyproject-build-system) (native-inputs - (list python-setuptools-scm)) + (list python-setuptools-scm python-setuptools python-wheel)) (propagated-inputs (list python-humanize python-requests python-six)) (home-page "https://pypi.org/project/htsget/") @@ -1935,6 +1938,7 @@ framework enables the use of any LR method with any resources.") (build-system pyproject-build-system) (propagated-inputs (list python-matplotlib python-numpy python-pandas)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://logomaker.readthedocs.io") (synopsis "Package for making Sequence Logos") (description "Logomaker is a Python package for generating @@ -1968,7 +1972,8 @@ multi-panel figures.") python-pillow python-scipy python-zarr)) - (native-inputs (list python-cython python-setuptools-scm)) + (native-inputs (list python-cython python-setuptools-scm + python-setuptools python-wheel)) (home-page "https://github.com/lilab-bcb/pegasusio") (synopsis "Read or write single-cell genomics data") (description @@ -2027,7 +2032,7 @@ weight.astype(\"str\") + '\\n')"))))))) python-scikit-learn python-scipy)) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/dpeerlab/PhenoGraph.git") (synopsis "Graph-based clustering for high-dimensional single-cell data") (description @@ -2058,6 +2063,7 @@ similarities between cells and then identifying communities in this graph.") python-numpy python-pandas python-seaborn)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/biobakery/phylophlan") (synopsis "Phylogenetic analysis of microbial isolates and genomes from metagenomes") @@ -2137,6 +2143,8 @@ phylogenetic markers, and can also scale to very large phylogenies comprising python-cython kentutils ; for bedGraphToBigWig python-six + python-setuptools + python-wheel ;; For the test suite. python-pytest python-psutil)) @@ -2330,6 +2338,7 @@ alignments and perform the following operations: "15m6ffks4zwpp1ycwk6n02py6mw2yh7qr0vhpc178b91gldr97ia")))) (build-system pyproject-build-system) (propagated-inputs (list python-pandas)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/alexomics/read-paf") (synopsis "Minimap2 PAF file reader") (description @@ -2442,6 +2451,7 @@ sequencing.") (lambda _ (setenv "HOME" "/tmp")))))) (propagated-inputs (list python-numpy)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://biopython.org/") (synopsis "Tools for biological computation in Python") (description @@ -3494,7 +3504,8 @@ off-target reads for a capture method that targets CpG-rich region.") (inputs (list zlib)) (native-inputs - (list python-cython python-lzo python-pytest)) + (list python-cython python-lzo python-pytest python-setuptools + python-wheel)) (home-page "https://github.com/bxlab/bx-python") (synopsis "Tools for manipulating biological data") (description @@ -3656,6 +3667,8 @@ has several key features: (native-inputs (list python-cython python-pytest + python-setuptools + python-wheel ;; Dependencies below are are for tests only. samtools bcftools)) @@ -3734,6 +3747,8 @@ UCSC genome browser.") (native-inputs `(("python-cython" ,python-cython) ("python-nose" ,python-nose) + ("python-setuptools" ,python-setuptools) + ("python-wheel" ,python-wheel) ("test-data" ,(origin (method url-fetch) @@ -4061,7 +4076,8 @@ file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF.") (arguments (list #:tests? #false)) ;there are none (native-inputs - (list python-cython python-pytest python-setuptools-scm)) + (list python-cython python-pytest python-setuptools-scm + python-setuptools python-wheel)) (propagated-inputs (list python-xopen)) (home-page "https://github.com/marcelm/dnaio/") @@ -4239,6 +4255,7 @@ files.") (list python-numpy)) (inputs (list libbigwig zlib curl)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/dpryan79/pyBigWig") (synopsis "Access bigWig files in Python using libBigWig") (description @@ -4277,9 +4294,11 @@ accessing bigWig files.") python-rdflib-jsonld python-requests python-ruamel.yaml + python-setuptools ; For pkg_resources. python-typing-extensions)) (native-inputs - (list python-black python-pytest python-pytest-runner)) + (list python-black python-pytest python-pytest-runner + python-wheel)) (home-page "https://github.com/common-workflow-language/schema_salad") (synopsis "Schema Annotations for Linked Avro Data (SALAD)") (description @@ -4380,6 +4399,7 @@ resources for bioinformatics.") python-scikit-learn python-scipy python-umap-learn)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/swolock/scrublet") (synopsis "Tool to indentify and remove doublets in single-cell data") (description "This package provides a tool for identifying and removing @@ -4456,6 +4476,7 @@ doublets in single-cell RNA-seq data.") python-requests python-ruamel.yaml python-schema-salad + python-setuptools ; For pkg_resources. python-shellescape python-typing-extensions ;; Not listed as needed but still necessary: @@ -4467,7 +4488,8 @@ doublets in single-cell RNA-seq data.") python-pytest python-pytest-cov python-pytest-mock - python-pytest-runner)) + python-pytest-runner + python-wheel)) (home-page "https://github.com/common-workflow-language/common-workflow-language") (synopsis "Common Workflow Language reference implementation") @@ -4521,7 +4543,8 @@ CWL descriptions.") (substitute* "tests/test_datamodel_taxon.py" (("collections.Iterable") "collections.abc.Iterable"))))))) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-wheel)) + (propagated-inputs (list python-setuptools)) (home-page "https://dendropy.org/") (synopsis "Library for phylogenetics and phylogenetic computing") (description @@ -5115,7 +5138,8 @@ multiple DJU methods.") (base32 "0cjpzyqz6r4lmiwry2gcxdczwpkhl3lyyjg4s8addln17691ysxk")))) (build-system pyproject-build-system) - (propagated-inputs (list python-pytest)) + (propagated-inputs (list python-pytest python-setuptools)) + (native-inputs (list python-wheel)) (home-page "https://github.com/betteridiot/bamnostic/") (synopsis "Tool for binary alignment map, random access and parsing") (description @@ -5213,7 +5237,7 @@ analysis tool Scanpy (Genome Biology, 2018).") python-pyqt python-scipy)) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "http://etetoolkit.org") (synopsis "Python environment for phylogenetic tree exploration") (description @@ -5234,6 +5258,7 @@ exploration.") (build-system pyproject-build-system) (arguments (list #:tests? #false)) ;there are none (propagated-inputs (list python-matplotlib python-numpy python-levenshtein)) + (native-inputs (list python-setuptools python-wheel python-pip)) (home-page "https://github.com/meren/illumina-utils") (synopsis "Library and scripts to work with Illumina paired-end data") (description @@ -5255,6 +5280,7 @@ Illumina paired-end data (for CASAVA 1.8+).") (propagated-inputs (list python-biopython python-matplotlib python-pandas python-scipy python-seaborn)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://widdowquinn.github.io/pyani/") (synopsis "Calculate genome-scale average nucleotide identity") (description @@ -8607,7 +8633,9 @@ complexity samples.") (build-system pyproject-build-system) (native-inputs (list python-pytest-cov - python-pytest-runner)) + python-pytest-runner + python-setuptools + python-wheel)) (home-page "https://github.com/dib-lab/screed/") (synopsis "Short read sequence database utilities") (description "Screed parses FASTA and FASTQ files and generates databases. @@ -8949,7 +8977,7 @@ bioinformatics file formats, sequence alignment, and more.") (inputs (list python-biopython python-pygtrie)) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/fhcrc/seqmagick") (synopsis "Tools for converting and modifying sequence files") (description @@ -11672,10 +11700,12 @@ replacement for strverscmp.") python-requests python-rich python-rich-click + python-setuptools ; For pkg_resources. python-simplejson python-spectra)) (native-inputs `(("python-pytest" ,python-pytest) + ("python-wheel" ,python-wheel) ("tests" ,(let ((commit "c3e7400affe3f3ca996973805797af61b93070ba")) (origin @@ -13301,9 +13331,10 @@ using the same syntax.") python-pydot python-requests python-scipy + python-setuptools python-statsmodels python-xlsxwriter)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-wheel)) (home-page "https://github.com/tanghaibao/goatools") (synopsis "Python scripts to find enrichment of GO terms") (description "Python scripts to find enrichment of GO terms. In addition, @@ -13419,9 +13450,10 @@ API services.") python-pysam python-regex python-ruamel.yaml + python-setuptools snakemake)) (native-inputs - (list python-pytest)) + (list python-pytest python-wheel)) (home-page "https://github.com/caleblareau/mgatk") (synopsis "Mitochondrial genome analysis toolkit.") (description "This package is a Python-based command line interface for @@ -15658,6 +15690,7 @@ implementation differs in these ways: python-patsy python-scikit-learn python-scipy + python-setuptools ; For pkg_resources. python-seaborn python-session-info python-sinfo @@ -16008,7 +16041,9 @@ bgzipped text file that contains a pair of genomic coordinates per line.") python-mock python-numpy python-pytest - python-pytest-cov)) + python-pytest-cov + python-wheel)) + (propagated-inputs (list python-setuptools)) (home-page "http://mattshirley.com") (synopsis "Random access to fasta subsequences") (description @@ -16174,7 +16209,7 @@ includes operations like compartment, insulation or peak calling.") python-scipy python-tables)) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/deeptools/HiCMatrix/") (synopsis "HiCMatrix class for HiCExplorer and pyGenomeTracks") (description @@ -17038,6 +17073,7 @@ polymorphisms) and indels with respect to a reference genome and more.") python-scipy ;; R packages r-dnacopy)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://cnvkit.readthedocs.org/") (synopsis "Copy number variant detection from targeted DNA sequencing") (description @@ -19146,7 +19182,9 @@ coordinates between different assemblies.") (list python-pytest lsof inetutils - openssl)) + openssl + python-setuptools + python-wheel)) (inputs (list time)) (propagated-inputs (list python-apsw @@ -19647,6 +19685,7 @@ feature is fast retrieval of range queries into numpy arrays.") (list python-biopython python-matplotlib python-packaging)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer") (synopsis "Plot features from DNA sequences") diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm index 069d02b52c..ec8cddbd16 100644 --- a/gnu/packages/bootloaders.scm +++ b/gnu/packages/bootloaders.scm @@ -69,6 +69,7 @@ #:use-module (gnu packages valgrind) #:use-module (gnu packages virtualization) #:use-module (gnu packages xorg) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (guix build-system gnu) @@ -676,6 +677,8 @@ tree binary files. These are board description files used by Linux and BSD.") pkg-config ;for 'make menuconfig' python python-pyelftools + python-setuptools + python-wheel swig (list util-linux "lib"))) (home-page "https://www.denx.de/wiki/U-Boot/") diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm index 71dc9eb54b..691fe67605 100644 --- a/gnu/packages/check.scm +++ b/gnu/packages/check.scm @@ -833,7 +833,7 @@ has been designed to be fast, light and unintrusive.") (base32 "0gymjcnvjx9snyrzdbmjnk93ibb161q72xam29vnl3yyac4r1330")))) (build-system pyproject-build-system) - (native-inputs (list python-nose)) + (native-inputs (list python-nose python-setuptools python-wheel)) (propagated-inputs (list python-cached-property python-configargparse python-jinja2 python-six @@ -1705,7 +1705,8 @@ timeout has been exceeded.") ;; 'hypothesis' plugin is not in the environment (due to ;; <http://issues.guix.gnu.org/25235>), which would cause the test suite ;; to fail (see: https://github.com/pytest-dev/pytest-forked/issues/54). - (list python-pytest-bootstrap python-setuptools-scm)) + (list python-pytest-bootstrap python-setuptools + python-setuptools-scm python-wheel)) (home-page "https://github.com/pytest-dev/pytest-forked") (synopsis "Pytest plugin to run tests in isolated forked subprocesses") (description "This package provides a Pytest plugin which enables running @@ -2030,7 +2031,7 @@ executed.") (lambda _ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$(package-version this-package))))))) - (native-inputs (list python-setuptools-scm)) + (native-inputs (list python-setuptools-scm python-setuptools python-wheel)) (propagated-inputs (list python-pytest)) (home-page "https://github.com/pytest-dev/pytest-asyncio") (synopsis "Pytest support for asyncio") @@ -2467,7 +2468,9 @@ a Pytest test execution.") python-mypy python-pytest python-pyyaml + python-setuptools python-regex)) + (native-inputs (list python-wheel)) (home-page "https://github.com/TypedDjango/pytest-mypy-plugins") (synopsis "Pytest plugin for writing tests for mypy plugins") (description "This package provides a pytest plugin for writing tests for diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index 762d8bd402..bdaa84f00a 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -3062,6 +3062,7 @@ protocol with Cython for performance.") (build-system pyproject-build-system) (arguments '(#:tests? #f)) ;test suite requires docker (propagated-inputs (list python-pymysql)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/aio-libs/aiomysql") (synopsis "MySQL driver for Python") (description "@code{aiomysql} is a driver for accessing a MySQL database @@ -3452,7 +3453,8 @@ on localhost.") (build-system pyproject-build-system) (native-inputs (list python-cython ; for C extensions - python-pytest python-mock python-pytest-xdist)) ; for tests + python-pytest python-mock python-pytest-xdist ; for tests + python-setuptools python-wheel)) (propagated-inputs (list python-greenlet)) (arguments @@ -3646,7 +3648,7 @@ text search extension.") (propagated-inputs (list python-click python-click-default-group python-dateutil python-sqlite-fts4 python-tabulate)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/simonw/sqlite-utils") (synopsis "CLI tool and Python utility functions for manipulating SQLite databases") @@ -3719,7 +3721,7 @@ PickleShare.") "02sgja00azvd08wi2wm105apmhp2644s7aw9b1zdg3dkcwjnsiad")))) (build-system pyproject-build-system) (native-inputs - (list python-cython unzip)) + (list python-cython unzip python-setuptools python-wheel)) (inputs (list sqlite-next)) ;SQLite 3.40 required. (arguments (list @@ -4039,7 +4041,7 @@ for Python. The design goals are: ;; The fix was forwarded upstream, see: ;; https://github.com/redis/hiredis-py/pull/160. (delete-file "tests/__init__.py")))))) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (inputs (list hiredis)) (home-page "https://github.com/redis/hiredis-py") (synopsis "Python extension that wraps protocol parsing code in hiredis") @@ -4131,6 +4133,8 @@ reasonable substitute.") (list python-pytest python-pytest-asyncio python-pytest-timeout + python-setuptools + python-wheel redis)) (propagated-inputs (list python-async-timeout)) diff --git a/gnu/packages/digest.scm b/gnu/packages/digest.scm index 481771804b..e478f43b77 100644 --- a/gnu/packages/digest.scm +++ b/gnu/packages/digest.scm @@ -123,7 +123,7 @@ platforms (both big and little endian).") "1hdxcscry59gh0znlm71ya23mm9rfmvz8lvvlplzxzf63pib28dc")))) (build-system pyproject-build-system) ;; Needed to embed the correct version string - (native-inputs (list python-setuptools-scm)) + (native-inputs (list python-setuptools-scm python-setuptools python-wheel)) (home-page "https://github.com/ifduyue/python-xxhash") (synopsis "Python binding for xxHash") (description "This package provides Python bindings for the xxHash hash diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm index 88f541d2e9..11b85508ec 100644 --- a/gnu/packages/engineering.scm +++ b/gnu/packages/engineering.scm @@ -2530,7 +2530,7 @@ specification can be downloaded at @url{http://3mf.io/specification/}.") (substitute* "pyvisa/shell.py" (("from .thirdparty import prettytable") "import prettytable"))))))) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-dataclasses python-prettytable python-typing-extensions)) (home-page "https://pyvisa.readthedocs.io/en/latest/") diff --git a/gnu/packages/fontutils.scm b/gnu/packages/fontutils.scm index 153602b4b4..7b0123b6cb 100644 --- a/gnu/packages/fontutils.scm +++ b/gnu/packages/fontutils.scm @@ -491,7 +491,8 @@ converts any cubic curves to quadratic. The most useful function is probably (sha256 (base32 "1rg2997af8blvswlwif0kpz2vxrlh555gzqslz6yv9y7i7v8lphl")))) (build-system pyproject-build-system) - (native-inputs (list python-pytest python-setuptools-scm)) + (native-inputs (list python-pytest python-setuptools-scm + python-setuptools python-wheel)) (propagated-inputs (list python-booleanoperations python-cffsubr @@ -638,7 +639,8 @@ process. FontParts is the successor of RoboFab.") "--ignore=tests/builder/interpolation_test.py"))) (native-inputs (list python-setuptools-scm - + python-setuptools + python-wheel ;; For tests. python-pytest python-xmldiff)) @@ -809,6 +811,7 @@ suite of the @code{psautohint} package.") python-pytest-cov python-pytest-xdist python-setuptools-scm + python-setuptools python-wheel)) (home-page "https://github.com/adobe-type-tools/psautohint") (synopsis "Adobe's PostScript autohinter") @@ -1693,7 +1696,7 @@ with @samp{nameIDs}.") (base32 "0yx4i8q5rfyqhr2fj70a7z1bp1jv7bdlr64ww9z4nv9ycbda4x9j")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest python-setuptools-scm)) + (list python-pytest python-setuptools-scm python-setuptools python-wheel)) (propagated-inputs (list python-attrs python-fonttools)) (home-page "https://github.com/fonttools/ufoLib2") (synopsis "Unified Font Object (UFO) font processing library") diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm index cce4f2518d..78d683d9e4 100644 --- a/gnu/packages/geo.scm +++ b/gnu/packages/geo.scm @@ -351,7 +351,9 @@ subdivisions.") python-numpy python-pytest python-scikit-build - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (inputs (list h3)) (home-page "https://uber.github.io/h3-py") (synopsis "Python bindings for H3") @@ -959,7 +961,7 @@ pyproj, Rtree, and Shapely.") (list python-fiona python-packaging python-pandas python-pyproj python-shapely)) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://geopandas.org") (synopsis "Geographic pandas extensions") (description "The goal of GeoPandas is to make working with @@ -1014,7 +1016,7 @@ require a spatial database such as PostGIS.") python-rtree python-shapely)) (native-inputs - (list python-numpy python-pytest)) + (list python-numpy python-pytest python-setuptools python-wheel)) (home-page "https://github.com/gboeing/osmnx") (synopsis "Retrieve, model, analyze, and visualize OpenStreetMap street networks") @@ -1801,7 +1803,7 @@ persisted. (string-append "\"" libspatialindex "/lib/libspatialindex_c.so\""))))))))) (native-inputs - (list python-numpy python-pytest python-wheel)) + (list python-numpy python-pytest python-setuptools python-wheel)) (inputs (list libspatialindex)) (home-page "https://github.com/Toblerity/rtree") diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index 5510828edf..013ef1a193 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -185,7 +185,7 @@ more.") (string-append igraph "/lib"))))))))))) (inputs (list igraph)) (propagated-inputs (list python-texttable)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://igraph.org/python/") (synopsis "Python bindings for the igraph network analysis library")))) @@ -353,11 +353,12 @@ algorithm for community detection in large networks.") (("self.use_pkgconfig = False") "self.use_pkgconfig = True"))))))) (inputs (list igraph)) - (propagated-inputs (list python-igraph)) + (propagated-inputs (list python-igraph python-setuptools)) (native-inputs (list pkg-config python-ddt - python-setuptools-scm)) + python-setuptools-scm + python-wheel)) (home-page "https://github.com/vtraag/louvain") (synopsis "Community detection in large networks") (description diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm index b91c365e3c..9ba62f9e07 100644 --- a/gnu/packages/graphviz.scm +++ b/gnu/packages/graphviz.scm @@ -156,7 +156,9 @@ interfaces for other technical domains.") python-mock python-pytest python-pytest-cov - python-pytest-mock)) + python-pytest-mock + python-setuptools + python-wheel)) (home-page "https://github.com/xflr6/graphviz") (synopsis "Simple Python interface for Graphviz") (description diff --git a/gnu/packages/license.scm b/gnu/packages/license.scm index ca8375d19d..3a10bf3293 100644 --- a/gnu/packages/license.scm +++ b/gnu/packages/license.scm @@ -179,13 +179,14 @@ belonging to various licenses.") (base32 "0ij2mpdnawjabnsy291157wzci9050dfclwib95phg7pnmd6xsw0")))) (build-system pyproject-build-system) (native-inputs - (list python-poetry-core python-pytest)) + (list python-poetry-core python-pytest python-wheel)) (inputs (list python-binaryornot python-boolean.py python-debian python-jinja2 - python-license-expression)) + python-license-expression + python-setuptools)) ; For pkg_resources. (home-page "https://reuse.software/") (synopsis "Provide and verify copyright and licensing information") (description diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 3923573d57..0532083b02 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -745,7 +745,7 @@ and not test_wmt22_references") python-portalocker python-regex python-tabulate)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/mjpost/sacrebleu") (synopsis "Compute shareable, comparable, and reproducible BLEU, chrF, and TER scores") @@ -786,7 +786,7 @@ unsupervised text tokenizer.") (build-system pyproject-build-system) ;; This package depends on spacy, which depends on this package. (arguments (list #:tests? #false)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://spacy.io") (synopsis "Legacy registered functions for spaCy backwards compatibility") (description @@ -807,7 +807,7 @@ compatibility.") (build-system pyproject-build-system) ;; This package depends on spacy, which depends on this package. (arguments (list #:tests? #false)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/explosion/spacy-loggers") (synopsis "Logging utilities for SpaCy") (description "This package provides logging utilities for the SpaCy @@ -1548,7 +1548,7 @@ for scientific computing and data science (e.g. BLAS and OpenMP).") python-scikit-learn tensorflow python-wheel)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/tslearn-team/tslearn") (synopsis "Machine learning toolkit for time series data") (description "This is a Python library for time series data mining. @@ -1594,7 +1594,9 @@ and forecasting.") python-mypy python-pandas python-pytest - python-pytest-cov)) + python-pytest-cov + python-setuptools + python-wheel)) (home-page "https://github.com/scikit-learn-contrib/imbalanced-learn") (synopsis "Toolbox for imbalanced dataset in machine learning") (description "This is a Python package offering a number of re-sampling @@ -1737,7 +1739,9 @@ standard feature selection algorithms.") (native-inputs (list python-pytest python-pytorch - python-torchvision)) + python-torchvision + python-setuptools + python-wheel)) (home-page "https://cleanlab.ai") (synopsis "Automatically find and fix dataset issues") (description @@ -1769,7 +1773,7 @@ data by providing clean labels during training.") python-scipy python-tqdm)) (native-inputs - (list python-pytest)))) + (list python-pytest python-setuptools python-wheel)))) (define-public python-cma (package @@ -1810,7 +1814,7 @@ and a few related numerical optimization tools.") (base32 "1f3143w8ii6i93bdh65iazrq1lryccd805ndnqww5l8h7qnnzpkm")) (file-name (git-file-name name version)))) (build-system pyproject-build-system) - (native-inputs (list python-hypothesis)) + (native-inputs (list python-hypothesis python-setuptools python-wheel)) (propagated-inputs (list python-numpy)) (home-page "https://github.com/CyberAgentAILab/cmaes") (synopsis "CMA-ES implementation for Python") @@ -1981,13 +1985,15 @@ interactive learning.") python-networkx python-numpy python-scipy + python-setuptools ; For pkg_resources. python-six python-tqdm)) (native-inputs (list python-black python-nose python-pymongo - python-pytest)) + python-pytest + python-wheel)) (home-page "https://hyperopt.github.io/hyperopt/") (synopsis "Library for hyperparameter optimization") (description "Hyperopt is a Python library for serial and parallel @@ -3537,7 +3543,8 @@ These include a barrier, broadcast, and allreduce.") ;; nor is examples/plot_quantum.py " and not test_file_is_generated")))) (propagated-inputs (list python-jsmin python-numpy python-scipy)) - (native-inputs (list python-pytest python-pytest-cov python-sphinx)) + (native-inputs (list python-pytest python-pytest-cov python-sphinx + python-setuptools python-wheel)) (home-page "https://github.com/tensorly/tensorly") (synopsis "Tensor learning in Python") (description @@ -3966,6 +3973,7 @@ as torchvision, torchtext, and others.") (lambda _ (delete-file "readchar/_win_read.py")))))) (propagated-inputs (list python-setuptools)) + (native-inputs (list python-wheel)) (home-page "https://github.com/magmax/python-readchar") (synopsis "Library to easily read single chars and key strokes") (description "This package provides a Python library to easily read single @@ -4199,7 +4207,7 @@ implementations and an easy-to-use API to create custom metrics. It offers: python-pillow-simd python-pytorch)) (native-inputs - (list which python-pytest)) + (list which python-pytest python-setuptools python-wheel)) (home-page "https://pytorch.org/vision/stable/index.html") (synopsis "Datasets, transforms and models specific to computer vision") (description @@ -4747,7 +4755,7 @@ fi" ;; Required by codegen. python-setuptools python-sympy)) - (native-inputs (list python-pytest python-pytest-xdist)) + (native-inputs (list python-pytest python-pytest-xdist python-wheel)) (home-page "https://briansimulator.org/") (synopsis "Clock-driven simulator for spiking neural networks") (description diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 0d74a2a55c..112e3ee071 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -161,6 +161,7 @@ #:use-module (gnu packages pkg-config) #:use-module (gnu packages pulseaudio) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages qt) @@ -4823,7 +4824,8 @@ access to BLIS implementations via traditional BLAS routine calls.") (invoke "python" "setup.py" "build_ext" "--inplace" "-j" (number->string (parallel-job-count)))))))) (propagated-inputs (list python-numpy)) - (native-inputs (list python-cython python-pytest)) + (native-inputs (list python-cython python-pytest + python-setuptools python-wheel)) (home-page "https://github.com/explosion/cython-blis") (synopsis "Blis as a self-contained C-extension for Python") (description diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm index 3238f11fb4..b979feff06 100644 --- a/gnu/packages/monitoring.scm +++ b/gnu/packages/monitoring.scm @@ -326,7 +326,7 @@ solution (server-side)"))) (string-append #$output "/share/doc/" #$name "/html"))))))) (native-inputs - (list python-pytest python-sphinx)) + (list python-pytest python-sphinx python-setuptools python-wheel)) (inputs (list ncurses python-requests)) (home-page "https://github.com/unioslo/zabbix-cli") diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm index dacd4433d2..4aedbd613c 100644 --- a/gnu/packages/package-management.scm +++ b/gnu/packages/package-management.scm @@ -963,7 +963,8 @@ and not test_conda_root_outside_root_environment")) (add-before 'check 'set-HOME (lambda _ (setenv "HOME" "/tmp")))))) (propagated-inputs - (list python-clyent python-nbformat python-pyyaml python-requests)) + (list python-clyent python-nbformat python-pyyaml python-requests + python-setuptools)) (native-inputs (list python-coverage python-dateutil @@ -971,7 +972,8 @@ and not test_conda_root_outside_root_environment")) python-mock python-pillow python-pytest - python-pytz)) + python-pytz + python-wheel)) (home-page "https://github.com/Anaconda-Platform/anaconda-client") (synopsis "Anaconda Cloud command line client library") (description diff --git a/gnu/packages/potassco.scm b/gnu/packages/potassco.scm index e6d7caa1ef..217521f37b 100644 --- a/gnu/packages/potassco.scm +++ b/gnu/packages/potassco.scm @@ -341,7 +341,8 @@ Python code."))) (("self\\.assertTrue\\(os_called\\)" all) (string-append "# " all)))))))) (propagated-inputs (list python-clingo)) - (native-inputs (list python-typing-extensions)) + (native-inputs (list python-typing-extensions + python-setuptools python-wheel)) (home-page "https://potassco.org") (synopsis "Object relational mapping to clingo") (description "@acronym{Clorm, Clingo ORM} provides an @acronym{ORM, @@ -366,6 +367,7 @@ into Python programs easier.") "0g3khxfdzc2hc7dkiyyqhb399h6h21m5wkp6wy8w71n0m32fiy53")))) (build-system pyproject-build-system) (propagated-inputs (list python-clingo)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://potassco.org/") (synopsis "Solve dynamic temporal logic programs") (description "This package provides a system to solve dynamic temporal @@ -393,8 +395,10 @@ logic programs based on clingo.") python-imageio python-jinja2 python-jsonschema - python-networkx)) - (native-inputs (list dot2tex graphviz python-pylint python-pytest)) + python-networkx + python-setuptools)) + (native-inputs (list dot2tex graphviz python-pylint python-pytest + python-wheel)) (home-page "https://github.com/potassco/clingraph") (synopsis "Visualizer for graphs defined as logic programs") (description diff --git a/gnu/packages/protobuf.scm b/gnu/packages/protobuf.scm index 8cd805799e..d026809093 100644 --- a/gnu/packages/protobuf.scm +++ b/gnu/packages/protobuf.scm @@ -381,7 +381,9 @@ any memory-restricted system.") (list python-grpc-stubs python-grpcio-tools python-pytest - python-typing-extensions)) + python-typing-extensions + python-setuptools + python-wheel)) (propagated-inputs (list protobuf python-protobuf diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm index 154c97e9e4..faaffbcea5 100644 --- a/gnu/packages/python-build.scm +++ b/gnu/packages/python-build.scm @@ -206,7 +206,7 @@ Python file, so it can be easily copied into your project.") (build-system pyproject-build-system) (arguments (list #:build-backend "setuptools.build_meta" #:tests? #f)) ;keep dependencies to a minimum - (native-inputs (list python-wheel)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/pypa/trove-classifiers") (synopsis "Canonical source for classifiers on PyPI") (description "This package is the canonical source for classifiers use on @@ -588,6 +588,7 @@ specified by PEP 517, @code{flit_core.buildapi}.") ;; builder instead. #:build-backend "setuptools.build_meta")) (propagated-inputs (list python-flit-core python-setuptools-scm python-tomli)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://gitlab.com/WillDaSilva/flit_scm") (synopsis "PEP 518 build backend combining flit_core and setuptools_scm") (description "This package provides a PEP 518 build backend that uses diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm index 87e15b4560..92289cb164 100644 --- a/gnu/packages/python-check.scm +++ b/gnu/packages/python-check.scm @@ -586,7 +586,9 @@ are too large to conveniently hard-code them in the tests.") " and not test_remote_data_requires" " and not test_remote_data_ignore_warnings")))) (native-inputs - (list python-numpy python-pytest python-setuptools-scm)) + (list python-numpy python-pytest python-setuptools python-setuptools-scm + python-wheel)) + (propagated-inputs (list python-setuptools)) ;; for pkg_resources (home-page "https://github.com/astropy/pytest-doctestplus") (synopsis "Pytest plugin with advanced doctest features") (description @@ -636,7 +638,9 @@ for interactively selecting and running Pytest tests.") (list python-pytest python-pytest-cov python-pytest-doctestplus - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://github.com/astropy/pytest-filter-subpackage") (synopsis "Pytest plugin for filtering based on sub-packages") (description @@ -749,7 +753,8 @@ were inadvertently left open at the end of a unit test.") "not test_default_behavior" " and not test_strict_with_decorator")))) (native-inputs - (list python-pytest python-setuptools-scm)) + (list python-pytest python-setuptools python-setuptools-scm + python-wheel)) (propagated-inputs (list python-packaging)) (home-page "https://github.com/astropy/pytest-remotedata") @@ -843,7 +848,9 @@ framework and makes it easy to undo any monkey patching. The fixtures are: (list #:test-flags #~(list "-m" "mpl_image_compare"))) (native-inputs - (list python-pytest)) + (list python-pytest + python-setuptools + python-wheel)) (propagated-inputs (list python-jinja2 python-matplotlib @@ -1770,7 +1777,8 @@ the implementation of that name.") (("def test_memory_profiler") "def __off_test_memory_profiler"))))))) (native-inputs - (list python-pytest python-pytest-fixture-config python-safety)) + (list python-pytest python-pytest-fixture-config python-safety + python-setuptools python-wheel)) (propagated-inputs (list python-psutil)) (home-page "https://github.com/pythonprofilers/memory_profiler") (synopsis "Memory profiler for Python") @@ -2178,7 +2186,7 @@ tests at one time.") (native-inputs (list python-pbr python-ddt python-pytest)) (propagated-inputs - (list python-aiohttp)) + (list python-aiohttp python-setuptools)) (home-page "https://github.com/pnuckowski/aioresponses") (synopsis "Mock out requests made by ClientSession from aiohttp package") (description @@ -2390,7 +2398,9 @@ which make writing and running functional and integration tests easier.") (native-inputs (list python-jinja2 python-pytest - python-tox)) + python-tox + python-setuptools + python-wheel)) (home-page "https://nox.thea.codes/") (synopsis "Flexible test automation") (description @@ -2544,7 +2554,8 @@ parametrize. This plugin allows you to use all four.") (base32 "1ncpd74hmsz4sadvjg99fnfscxpgh3mc2siini0dhxzwgwdkk5i7")))) (build-system pyproject-build-system) (propagated-inputs (list python-httpx)) - (native-inputs (list python-pytest python-pytest-asyncio)) + (native-inputs (list python-pytest python-pytest-asyncio python-setuptools + python-wheel)) (home-page "https://colin-b.github.io/pytest_httpx/") (synopsis "Pytest plugin to mock httpx") (description "This package provides a pytest fixture to mock httpx @@ -2621,7 +2632,8 @@ running acceptance tests on headless servers.") ;; skip test that uses python-pint ;; pint has many dependencies "not test_whitelists_with_python"))))))) - (native-inputs (list python-pytest python-pytest-cov)) + (native-inputs (list python-pytest python-pytest-cov + python-setuptools python-wheel)) (propagated-inputs (list python-toml)) (home-page "https://github.com/jendrikseipp/vulture") (synopsis "Find dead Python code") diff --git a/gnu/packages/python-compression.scm b/gnu/packages/python-compression.scm index 000d42524d..9d8ea8b156 100644 --- a/gnu/packages/python-compression.scm +++ b/gnu/packages/python-compression.scm @@ -64,7 +64,9 @@ python-hypothesis python-pyannotate python-pytest - python-pytest-cov)) + python-pytest-cov + python-setuptools + python-wheel)) (home-page "https://github.com/miurahr/multivolume") (synopsis "Treat multiple files as one") (description "MultiVolumefile is a Python library that provides a @@ -89,7 +91,9 @@ were a single file.") python-hypothesis python-pytest python-pytest-cov - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://codeberg.org/miurahr/pybcj") (synopsis "BCJ filter library") (description "In data compression, BCJ, short for Branch-Call-Jump, refers @@ -149,6 +153,7 @@ Jump conversion filter by CFFI for Python.") (setenv "USE_SHARED_BROTLI" "1")))))) (propagated-inputs (list python-cffi)) (inputs (list brotli)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/python-hyper/brotlicffi") (synopsis "Python CFFI bindings to the Brotli library") (description "This package provides Python CFFI bindings to the Brotli @@ -170,7 +175,9 @@ library.") (native-inputs (list python-pyannotate python-pytest - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://pypi.org/project/inflate64/") (synopsis "deflate64 compression/decompression library") (description "The @code{inflate64} package provides @code{Deflater} and @@ -199,7 +206,7 @@ compression algorithm.") (add-after 'unpack 'use-dynamic-linking (lambda _ (setenv "PYTHON_ISAL_LINK_DYNAMIC" "1")))))) (inputs (list isa-l)) - (native-inputs (list python-cython)) + (native-inputs (list python-cython python-setuptools python-wheel)) (home-page "https://github.com/pycompression/python-isal") (synopsis "Python bindings for the ISA-L compression library") (description @@ -225,7 +232,9 @@ and decompression by implementing Python bindings for the ISA-L library.") python-pytest-benchmark python-pytest-cov python-pytest-timeout - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://github.com/miurahr/pyppmd") (synopsis "PPMd compression/decompression library") (description "Pyppmd provides classes and functions for compressing and @@ -287,6 +296,7 @@ several possible methods.") python-texttable)) (native-inputs (list python-setuptools + python-wheel python-setuptools-scm python-coverage python-coveralls diff --git a/gnu/packages/python-crypto.scm b/gnu/packages/python-crypto.scm index 44babe5c8c..fb4cc63097 100644 --- a/gnu/packages/python-crypto.scm +++ b/gnu/packages/python-crypto.scm @@ -298,7 +298,9 @@ do what is needed for client/server Kerberos authentication based on (native-inputs (list python-toml python-pytest - python-setuptools-scm)) + python-setuptools + python-setuptools-scm + python-wheel)) (propagated-inputs (list python-importlib-metadata python-jaraco-classes @@ -530,7 +532,9 @@ is used by the Requests library to verify HTTPS requests.") python-pretend python-pytest ;for subtests python-pytest-benchmark - python-pytest-subtests)) + python-pytest-subtests + python-setuptools + python-wheel)) (inputs (list python-cryptography-rust)) (propagated-inputs (list python-cffi)) (home-page "https://github.com/pyca/cryptography") @@ -1038,7 +1042,7 @@ provides drop-in compatibility with PyCrypto."))) ;; certificates. #:tests? #f)) (inputs (list openssl)) - (native-inputs (list swig)) + (native-inputs (list swig python-setuptools python-wheel)) (home-page "https://gitlab.com/m2crypto/m2crypto") (synopsis "Python crypto and TLS toolkit") (description "@code{M2Crypto} is a complete Python wrapper for OpenSSL @@ -1218,7 +1222,8 @@ derivation function.") (base32 "0d4x84crbz0a17d8gi90z6zlxwm9pslc65rx0cdw2797ra360v3f")))) (build-system pyproject-build-system) - (native-inputs (list python-idna python-pytest)) + (native-inputs (list python-idna python-pytest python-setuptools + python-wheel)) (propagated-inputs (list python-attrs python-cryptography python-pyasn1 python-pyasn1-modules python-six)) (home-page "https://service-identity.readthedocs.io/") @@ -1449,6 +1454,8 @@ items and collections, editing items, locking and unlocking collections python-pytest python-pytest-cov python-service-identity + python-setuptools + python-wheel python-zipp)) (propagated-inputs (list python-cryptography diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 86ba4209fd..538a3c2f0e 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -191,9 +191,12 @@ routines such as routines for numerical integration and optimization.") (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list python-dask - python-numpy)) + python-numpy + python-click)) (native-inputs (list python-cython + python-setuptools + python-wheel ;; The following are all needed for the tests htslib python-h5py @@ -340,7 +343,7 @@ logic, also known as grey logic.") python-scikit-learn python-scipy)) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://scikit-optimize.github.io/") (synopsis "Sequential model-based optimization toolbox") (description "Scikit-Optimize, or @code{skopt}, is a simple and efficient @@ -743,7 +746,7 @@ multiple deep learning frameworks.") "1339fz5gxkizq02h6vn19546x9p4c3nd9ipzpcg39h7gwhg26yi6")))) (build-system pyproject-build-system) (native-inputs - (list python-setuptools-scm python-pytest)) + (list python-setuptools python-setuptools-scm python-pytest python-wheel)) (propagated-inputs (list python-numpy python-pandas)) (home-page "https://github.com/pydata/xarray") @@ -840,7 +843,8 @@ parentdir_prefix = pytensor- "--ignore" "tests/tensor/" "--ignore" "tests/sandbox/" "--ignore" "tests/sparse/sandbox/"))))))) - (native-inputs (list python-cython python-pytest python-versioneer)) + (native-inputs (list python-cython python-pytest python-versioneer + python-setuptools python-wheel)) (propagated-inputs (list python-cons python-etuples python-filelock @@ -1585,7 +1589,9 @@ aggregated sum and more.") python-mock python-pandas python-pytest python-pytest-cov - tzdata-for-tests)) + tzdata-for-tests + python-setuptools + python-wheel)) (home-page "https://github.com/has2k1/plotnine") (synopsis "Grammar of Graphics for Python") (description @@ -2035,7 +2041,8 @@ NeuroML2 models.") "0mrm4rd6x1sm6hkvhk20mkqp9q53sl3lbvq6hqzyymkw1iqq6bhy")))) (build-system pyproject-build-system) (propagated-inputs (list python-lxml python-six)) - (native-inputs (list python-pytest python-numpy python-tables)) + (native-inputs (list python-pytest python-numpy python-tables + python-setuptools python-wheel)) (home-page "https://libneuroml.readthedocs.org/en/latest/") (synopsis "Python library for working with NeuroML descriptions of neuronal models") diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index 17c9563cfd..1389a15934 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -304,7 +304,8 @@ by calling @code{FrozenList.freeze}.") (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "tests"))) (propagated-inputs (list python-frozenlist)) - (native-inputs (list python-pytest python-pytest-asyncio python-pytest-cov)) + (native-inputs (list python-pytest python-pytest-asyncio python-pytest-cov + python-setuptools python-wheel)) (home-page "https://github.com/aio-libs/aiosignal") (synopsis "Callback manager for Python @code{asyncio} projects") (description "This Python module provides @code{Signal}, an abstraction to @@ -601,7 +602,9 @@ WSGI. This package includes libraries for implementing ASGI servers.") python-httpx python-pytest python-pytest-asyncio - python-starlette)) + python-starlette + python-setuptools + python-wheel)) (home-page "https://github.com/simonw/asgi-csrf") (synopsis "ASGI middleware for protecting against CSRF attacks") (description "This Asynchronous Server Gateway Interface (ASGI) @@ -642,7 +645,9 @@ that is then compared to a @code{csrftoken} hidden form field or a (native-inputs (list python-pytest python-pytest-asyncio python-pytest-trio - python-starlette)) + python-starlette + python-setuptools + python-wheel)) (propagated-inputs (list python-sniffio)) (home-page "https://github.com/florimondmanca/asgi-lifespan") (synopsis "Programmatic startup/shutdown of ASGI apps") @@ -764,7 +769,9 @@ Model} (SAM) templates into AWS CloudFormation templates.") python-pytest-benchmark python-requests python-sqlalchemy - python-webtest)) + python-webtest + python-setuptools + python-wheel)) (propagated-inputs (list python-aiohttp python-botocore @@ -1101,7 +1108,9 @@ over a different origin than that of the web application.") python-pytest-randomly python-pytest-timeout python-pytest-xdist - python-six)) + python-six + python-setuptools + python-wheel)) (home-page "https://github.com/httplib2/httplib2") (synopsis "Comprehensive HTTP client library") (description @@ -1419,7 +1428,7 @@ for use in Python programs that implement HTTP/2.") (base32 "17b97c56y31hi0n0x0cb5a87x4xr9jijf2y06pzj0977k6zgn6cg")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/python-hyper/h11") (synopsis "Pure-Python, bring-your-own-I/O implementation of HTTP/1.1") (description @@ -1825,7 +1834,9 @@ is Python’s.") python-pytest-mock python-requests-mock python-setuptools-scm - python-tox)) + python-tox + python-setuptools + python-wheel)) (home-page "https://omnipathdb.org/") (synopsis "Python client for the OmniPath web service") (description "This package provides a Python client for the OmniPath web @@ -1855,7 +1866,7 @@ service.") (propagated-inputs (list python-aiohttp python-requests python-tqdm python-typing-extensions)) (native-inputs (list python-black python-pytest python-pytest-asyncio - python-pytest-mock)) + python-pytest-mock python-setuptools python-wheel)) (home-page "https://github.com/openai/openai-python") (synopsis "Python client library for the OpenAI API") (description "This package provides a Python client library for the @@ -2060,7 +2071,7 @@ for clients and servers.") "and not encutils " "and not website.logging"))))))) (native-inputs - (list python-pytest python-jaraco-test)) + (list python-pytest python-jaraco-test python-setuptools python-wheel)) (home-page "https://github.com/jaraco/cssutils") (synopsis "CSS Cascading Style Sheets library for Python") @@ -2243,7 +2254,7 @@ set out in RFC 7540 Section 5.3 (Stream Priority).") (base32 "0rahm1j9danv1l6i6as80acwv16ycihxkhrvwjiqh9drxhk5ymmd")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-h11)) (home-page "https://github.com/python-hyper/wsproto/") @@ -3728,7 +3739,7 @@ presume or force a developer to use a particular tool or library.") "178jzz6jxlxllcjqamzh5q7ahfh90m5cl1il9vmjs3xhz65z35pf")))) (build-system pyproject-build-system) (propagated-inputs (list python-brotli python-flask)) - (native-inputs (list python-setuptools-scm)) + (native-inputs (list python-setuptools-scm python-setuptools python-wheel)) (home-page "https://github.com/colour-science/flask-compress") (synopsis "Compress responses in a Flask app") (description @@ -3751,6 +3762,7 @@ headers required for a compressed response and compresses the response data.") (arguments (list #:tests? #false)) ;there are none (propagated-inputs (list python-flask)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/maxcountryman/flask-seasurf/") (synopsis "CSRF extension for Flask") (description "SeaSurf is a Flask extension for preventing cross-site @@ -4182,7 +4194,7 @@ transfers.") "flask_jwt/__init__.py") (("access_token.decode\\('utf-8'\\)") "access_token"))))))) (propagated-inputs (list python-flask python-pyjwt)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/mattupstate/flask-jwt") (synopsis "JWT token authentication for Flask apps") (description "This package implements JWT token authentication for Flask @@ -4209,7 +4221,9 @@ apps.") (native-inputs (list python-blinker python-mock - python-pytest)) + python-pytest + python-setuptools + python-wheel)) (home-page "https://www.github.com/flask-restful/flask-restful/") (synopsis "Flask module for creating REST APIs") (description @@ -4870,9 +4884,9 @@ available in Django, but is a standalone package.") (delete-file "tests/test_proxy.py") #t)))) (build-system pyproject-build-system) (native-inputs - (list python-pytest python-nose)) + (list python-pytest python-wheel)) (propagated-inputs - (list python-six)) + (list python-six python-setuptools)) (home-page "https://pythonpaste.readthedocs.io/") (synopsis "Python web development tools, focusing on WSGI") @@ -5148,6 +5162,7 @@ for httplib2 transport.") python-wcwidth python-werkzeug python-dotenv)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/benbusby/whoogle-search") (synopsis "Self-hosted, ad-free, privacy-respecting metasearch engine") (description @@ -5989,7 +6004,9 @@ and serve updated contents upon changes to the directory.") python-pytest-httpbin python-pytest-trio python-uvicorn - python-trustme)) + python-setuptools + python-trustme + python-wheel)) (propagated-inputs (list python-anyio python-certifi @@ -6023,7 +6040,7 @@ Some things HTTP Core does do: (package/inherit python-httpcore (name "python-httpcore-bootstrap") (arguments (list #:tests? #f)) - (native-inputs '())))) + (native-inputs (list python-setuptools python-wheel))))) (define-public python-httpx (package @@ -6067,7 +6084,9 @@ Some things HTTP Core does do: python-trio python-trio-typing python-trustme - python-uvicorn)) + python-uvicorn + python-setuptools + python-wheel)) (propagated-inputs (list python-charset-normalizer python-brotli @@ -6299,7 +6318,7 @@ major web browsers.") "/include/rapidjson" "'")) (("if not os.path.isdir.*") "if False:"))))))) (native-inputs - (list rapidjson python-pytest python-pytz)) + (list rapidjson python-pytest python-pytz python-setuptools python-wheel)) (home-page "https://github.com/python-rapidjson/python-rapidjson") (synopsis "Python wrapper around rapidjson") (description "This package provides a python wrapper around rapidjson.") diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index b8e8097c7b..eee0e5f744 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -307,7 +307,8 @@ similar XML files, in the same way the @command{diff} utility does it.") (base32 "04hnrdcf03g1s0x3sr72sh9gnszz6kyfsl9dg8a4n0zvvhn6z5yz")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest python-pytest-cov python-pytest-asyncio)) + (list python-pytest python-pytest-cov python-pytest-asyncio + python-setuptools python-wheel)) (propagated-inputs (list python-typing-extensions)) (home-page "https://github.com/aio-libs/janus/") (synopsis @@ -579,6 +580,7 @@ and variables you'll need already imported and created. "12v8l5i35vjbpvh5i4lw29ys6vpr3z7pysyrx33hxaq09zr015mx")))) (build-system pyproject-build-system) (propagated-inputs (list python-numpy python-scipy)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/joachimwolff/fit_nbinom") (synopsis "Negative binomial maximum likelihood estimator") (description "This package provides an implementation in Python using @@ -597,7 +599,8 @@ scipy and numpy of negative binomial maximum likelihood estimation.") "0523jrzjj29kxpdllmfhrfj9kysi9mphp2m7ippjkn5b07i1g2pd")))) (build-system pyproject-build-system) (propagated-inputs (list python-six)) - (native-inputs (list python-pytest python-pytest-runner)) + (native-inputs (list python-pytest python-pytest-runner + python-setuptools python-wheel)) (home-page "https://github.com/Chilipp/docrep") (synopsis "Python package for docstring repetition") (description "Docrep is the documentation repetition module. This module @@ -655,6 +658,7 @@ features of the Python's built-in dict.") "05zf0xn7ab40dan213fwbp1z4rybih8dphf9mzb2ddmbafxq41mv")))) (build-system pyproject-build-system) (propagated-inputs (list python-matplotlib python-numpy)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/Phlya/adjustText") (synopsis "Adjust text position in matplotlib plots to minimize overlaps") (description @@ -772,6 +776,7 @@ git integration, command-line support, and a curses-based TUI.") "196ins0m7f90xz5dw764dlx060ziqbcydqzzq40b4ir5858baf3r")))) (build-system pyproject-build-system) (arguments (list #:tests? #false)) ;the tests are not run automatically + (native-inputs (list python-setuptools python-wheel)) (home-page "https://gitlab.com/dslackw/colored") (synopsis "Simple library for color and formatting to terminal") (description "This is a very simple Python library for color and @@ -794,7 +799,8 @@ names for 256 color terminal setups.") (base32 "1fcz5v8b318a3dsdha4c874jsf3wmcw3f25bv2csixclyzacli98")))) (build-system pyproject-build-system) (native-inputs - (list python-coverage python-flake8 python-pytest)) + (list python-coverage python-flake8 python-pytest python-setuptools + python-wheel)) (propagated-inputs (list python-colorama)) (home-page "http://github.com/timofurrer/colorful") @@ -1101,7 +1107,8 @@ Specification v2.0 (PEP 249).") (base32 "0gxkw607nrd67ck4w8jri9vfrm5g60qvp8b134m8zkiphbxjnx0l")))) (build-system pyproject-build-system) - (native-inputs (list python-pytest python-jinja2 python-pygments)) + (native-inputs (list python-pytest python-jinja2 python-pygments + python-setuptools python-wheel)) (arguments (list ;; Some tests fail, presumably because of slight version mismatches of @@ -1202,6 +1209,7 @@ different units.") "1gpy1z2i4vq1mcrhysxahz4339pbl9rzk58rf5m5gf5ym9xji6ii")))) (build-system pyproject-build-system) (arguments (list #:tests? #false)) ;there are none + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/piccolomo/plotext") (synopsis "Plots in the terminal") (description "Plotext lets you plot directly to the terminal.") @@ -1331,6 +1339,8 @@ generator MkDocs.") python-matplotlib python-pandas python-poetry-core + python-setuptools + python-wheel python-pytest)) (home-page "https://github.com/crflynn/skranger") (synopsis "Python bindings for C++ ranger random forests") @@ -1399,7 +1409,7 @@ threads.") (build-system pyproject-build-system) (native-inputs (list python-setuptools-scm python-tornado-6 python-typeguard - python-pytest)) + python-pytest python-setuptools python-wheel)) (home-page "https://github.com/jd/tenacity") (synopsis "Retrying library for python") (description "Tenacity is a general-purpose python library to simplify the @@ -1527,7 +1537,7 @@ of a loop structure or other iterative computation.") ;; which is patched above. (delete-file "tests/test_config.py")))))) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (inputs (list openjpeg ; glymur/lib/openjp2.py libtiff)) ; glymur/lib/tiff.py @@ -1796,7 +1806,7 @@ attacks or network discovery.") python-click-plugins python-cligj python-numpy - python-setuptools + python-setuptools ; For pkg_resources. python-snuggs)) (native-inputs (list gdal python-boto3 @@ -1805,7 +1815,8 @@ attacks or network discovery.") python-packaging python-pytest python-pytest-cov - python-shapely)) + python-shapely + python-wheel)) (home-page "https://github.com/rasterio/rasterio") (synopsis "Fast and direct raster I/O for use with Numpy and SciPy") (description "This package implements fast and direct raster I/O for use @@ -1833,7 +1844,7 @@ with Numpy and SciPy.") (invoke "python" "setup.py" "build_ext" "--inplace")))))) (native-inputs (list python-cython python-matplotlib python-pytest - python-pytest-cov)) + python-pytest-cov python-setuptools python-wheel)) (inputs (list geos)) (propagated-inputs @@ -2119,7 +2130,9 @@ NetCDF files can also be read and modified. Python-HDF4 is a fork of (native-inputs (list python-netcdf4 python-pytest - python-setuptools-scm)) + python-setuptools + python-setuptools-scm + python-wheel)) (propagated-inputs (list python-h5py python-packaging)) (home-page "https://h5netcdf.org") @@ -2414,7 +2427,7 @@ and lookups.") (base32 "0lvshl2fhwa568d3y3vmx45hdp8gk5w9yl3b2q5d66r5vqn1sfwl")))) (build-system pyproject-build-system) (native-inputs - (list python-setuptools-scm python-pytest)) + (list python-setuptools-scm python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-boolean.py)) (home-page "https://github.com/nexB/license-expression") @@ -2537,7 +2550,8 @@ inter-process communication.") (base32 "058av1r760ws7z6qffsjpqa39fmdxw0s1wnyr7p50y3zclg6cyqk")))) (build-system pyproject-build-system) - (native-inputs (list python-pytest python-setuptools-scm)) + (native-inputs (list python-pytest python-setuptools-scm + python-setuptools python-wheel)) (home-page "https://github.com/tox-dev/py-filelock") (synopsis "Platform independent file lock") (description "@code{filelock} contains a single module implementing @@ -2798,7 +2812,8 @@ class.") ;; These tests fail with "OSError: [Errno 19] No such device". "-k" "not BasicTestUdpMulticastBusIPv"))) (propagated-inputs - (list python-msgpack python-typing-extensions python-wrapt)) + (list python-msgpack python-typing-extensions python-wrapt + python-setuptools)) (native-inputs (list ;; python-canalystii ; Not packed yet python-codecov @@ -2811,7 +2826,8 @@ class.") python-pytest python-pytest-cov python-pytest-runner - python-pytest-timeout)) + python-pytest-timeout + python-wheel)) (home-page "https://github.com/hardbyte/python-can") (synopsis "Controller Area Network (CAN) interface module for Python") (description "This package defines the @code{can} module, which provides @@ -2912,6 +2928,7 @@ a library.") (base32 "1920wbh2b7a8qn7zx2iiqbcdaax335l81a73x9pp8h11yzs2jdmh")))) (build-system pyproject-build-system) (arguments (list #:tests? #false)) ;There are none + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/gvalkov/optparse-pretty") (synopsis "Compact help formatter for optparse") (description @@ -3156,6 +3173,7 @@ for additional processing.") ;; XXX: Fails with: "In procedure utime: No such file ;; or directory". (delete 'ensure-no-mtimes-pre-1980)))) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/fastai/fastprogress") (synopsis "Progress bar for Jupyter Notebook and console") (description @@ -3389,6 +3407,8 @@ of @code{xmlfile}.") python-pytest python-pytest-rerunfailures python-pytest-xdist + python-setuptools + python-wheel unzip (origin (method url-fetch) @@ -3679,7 +3699,9 @@ Python.") python-pytest-subtests python-responses python-tox - python-types-requests)) + python-types-requests + python-setuptools + python-wheel)) (home-page "https://github.com/omni-us/jsonargparse/") (synopsis "Implement minimal boilerplate CLIs derived from type hints") (description @@ -3884,7 +3906,7 @@ commands.") (base32 "1a4h0jpsr3wjciqg9a5kslxv65d3qqgmqgkpai4cl77wlpcxfk89")))) (build-system pyproject-build-system) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://jiffyclub.github.io/palettable/") (synopsis "Color palettes for Python") (description "Palettable (formerly brewer2mpl) is a library of color @@ -3965,7 +3987,8 @@ syntax.") (string-append "not test_sending_empty_netstring" " and not test_sending_one_netstring" " and not test_sending_two_netstrings")))) - (native-inputs (list python-pytest python-twisted)) + (native-inputs (list python-pytest python-twisted python-setuptools + python-wheel)) (home-page "https://launchpad.net/parsley") (synopsis "Parsing and pattern matching Python library") (description @@ -4069,7 +4092,9 @@ Cython for speed.") python-pytest-cov python-pytest-mypy python-pytest-timeout - python-redis)) + python-redis + python-setuptools + python-wheel)) (home-page "https://github.com/WoLpH/portalocker") (synopsis "Python library for file locking") (description "Portalocker is a library to provide an easy API to file @@ -4159,7 +4184,9 @@ and is not compatible with JSON.") python-pytest python-pytest-astropy python-pytest-cov - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://extension-helpers.readthedocs.io") (synopsis "Astropy ecosystem utilities for building and installing packages") (description @@ -4633,12 +4660,14 @@ clickgen is using @code{anicursorgen} and @code{xcursorgen} under the hood.") python-orjson python-pandas python-pytz + python-setuptools ; For pkg_resources. python-sqlalchemy python-urllib3 python-zstandard)) (native-inputs (list python-cython - python-pytest)) + python-pytest + python-wheel)) (home-page "https://github.com/ClickHouse/clickhouse-connect") (synopsis "ClickHouse database core driver for Python, Pandas, and Superset") @@ -4683,7 +4712,7 @@ well-tested and interoperable CLIs for handling GeoJSON.") "05c6cjpnf9s72gyn5dckxbmd8rf2kgdzfsl7pqzrnc1lcdl13zmv")))) (build-system pyproject-build-system) (propagated-inputs (list python-click)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/janLuke/cloup") (synopsis "Extension library for python-click") (description @@ -4787,7 +4816,8 @@ compare, diff, and patch JSON and JSON-like structures in Python.") (when tests? (setenv "JSON_SCHEMA_TEST_SUITE" "json") (invoke "trial" "jsonschema"))))))) - (native-inputs (list python-setuptools-scm python-twisted)) + (native-inputs (list python-setuptools-scm python-twisted + python-setuptools python-wheel)) (propagated-inputs (list python-attrs python-importlib-metadata @@ -4990,7 +5020,9 @@ memory usage and transliteration quality.") python-cryptography python-pytest python-sphinx - python-sphinx-rtd-theme)) + python-sphinx-rtd-theme + python-setuptools + python-wheel)) (home-page "https://github.com/progrium/pyjwt") (synopsis "JSON Web Token implementation in Python") (description @@ -5237,7 +5269,7 @@ work on your part.") (base32 "17f55gi55rg47nm88fn3f8851ph03dgykdp011lxr3j6hk18lyfv")))) (build-system pyproject-build-system) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/tsutsu3/uc.micro-py") (synopsis "Unicode data files for linkify-it-py projects") (description "This package contains a micro subset of Unicode data files @@ -5259,7 +5291,7 @@ for linkify-it-py projects.") "0fg0a1lc8xbb62y9krxcp708ll58dxcwm8i7rrwpkd5sh2229f6x")))) (build-system pyproject-build-system) (propagated-inputs (list python-uc-micro-py)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/tsutsu3/linkify-it-py") (synopsis "Links recognition library with full Unicode support") (description "This is Python port of @@ -5284,7 +5316,7 @@ recognition library with full Unicode support. It has features like: "19a8dga8rnmjn5gy1cy1wdi28swbkdkypwbqikbxil6ynqcg3c20")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest python-setuptools-scm)) + (list python-pytest python-setuptools python-setuptools-scm python-wheel)) (home-page "https://github.com/smarie/python-makefun") (synopsis "Library to dynamically create python functions") (description "@code{makefun} helps create functions dynamically with a @@ -5867,7 +5899,9 @@ via commands such as @command{rst2man}, as well as supporting Python code.") python-flake8 python-mock python-pyparsing - python-pytest)) + python-pytest + python-setuptools + python-wheel)) (propagated-inputs (list python-lxml)) (home-page "https://github.com/python-openxml/python-docx/") @@ -6025,6 +6059,7 @@ text styles of documentation.") (base32 "1qm4xdmzd4q5pc9h5gjdpr5m7lg06k8dvqnjn7d07d3fhani8d90")))) (build-system pyproject-build-system) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/mina86/pygtrie") (synopsis "Pure Python trie data structure implementation") (description @@ -7447,7 +7482,7 @@ readable format.") (base32 "1v34xdvh6i5cn5srwicvp0i2kvv8fzsv0v9p72ng081nsczmhgvr")))) (build-system pyproject-build-system) (propagated-inputs (list python-cffi libgit2)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/libgit2/pygit2") (synopsis "Python bindings for libgit2") (description "Pygit2 is a set of Python bindings to the libgit2 shared library.") @@ -7685,7 +7720,9 @@ semantic version parser for Node.js.") (base32 "1r1lcq59v6l75wkbp7mypanr69a6fv6m58v6dw3v6b4vwz5nqg0z")))) (build-system pyproject-build-system) - (propagated-inputs (list python-appdirs python-nose python-pyyaml)) + (propagated-inputs (list python-appdirs python-nose python-pyyaml + python-setuptools)) + (native-inputs (list python-wheel)) (home-page "https://github.com/simonvh/norns") (synopsis "Simple YAML-based config module") (description "This package provides a simple YAML-based config module.") @@ -9006,9 +9043,10 @@ from FFMPEG, reliably terminating the process when done.") (delete-file "tests/test_freeimage.py")))))) (inputs (list freeimage)) (propagated-inputs - (list python-imageio-ffmpeg python-numpy python-pillow python-psutil)) + (list python-imageio-ffmpeg python-numpy python-pillow python-psutil + python-setuptools)) (native-inputs - (list python-pytest)) + (list python-pytest python-wheel)) (home-page "https://imageio.github.io/") (synopsis "Library for reading and writing a wide range of image data") (description @@ -10083,7 +10121,9 @@ releases.") python-pytest-cov python-pytest-enabler python-pytest-flake8 - python-pytest-mypy)) + python-pytest-mypy + python-setuptools + python-wheel)) (home-page "https://github.com/jaraco/jaraco.test") (synopsis "Testing support by jaraco") (description "This package provides testing support by jaraco.") @@ -10441,6 +10481,7 @@ without using the configuration machinery.") python-pyzmq python-tornado-6 python-traitlets)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://jupyter.org/") (synopsis "Jupyter protocol implementation and client libraries") (description @@ -10478,7 +10519,9 @@ installing @code{kernelspec}s for use with Jupyter frontends.") python-pytest-timeout python-async-generator python-ipython - python-ipykernel-bootstrap)) + python-ipykernel-bootstrap + python-setuptools + python-wheel)) (properties (alist-delete 'hidden? (package-properties base)))))) (define-public python-ipykernel @@ -10559,6 +10602,8 @@ installing @code{kernelspec}s for use with Jupyter frontends.") ;; avoids that. python-pytest-bootstrap python-pytest-timeout + python-setuptools + python-wheel tini)) (home-page "https://ipython.org") (synopsis "IPython Kernel for Jupyter") @@ -10578,7 +10623,7 @@ installing @code{kernelspec}s for use with Jupyter frontends.") ;; left out here to break the cycle. #:phases #~(modify-phases %standard-phases (delete 'sanity-check)))) - (native-inputs '()) + (native-inputs (list python-setuptools python-wheel)) (propagated-inputs (modify-inputs (package-propagated-inputs parent) (replace "python-jupyter-client" python-jupyter-client-bootstrap) @@ -10648,7 +10693,9 @@ callback signature using a prototype function.") python-unidecode)) (native-inputs (list python-pytest - python-pytest-cov)) + python-pytest-cov + python-setuptools + python-wheel)) (home-page "https://github.com/titipata/pubmed_parser") (synopsis "Parser for Pubmed Open-Access Subset and MEDLINE XML repository") (description @@ -11875,6 +11922,7 @@ falling into the Python interpreter.") "{ name = \"Maarten van der Sande\", email = \"maartenvandersande@hotmail.com\"}") (("license = \"MIT\"") "license = { file = \"LICENSE\"}"))))))) (propagated-inputs (list python-numba python-numpy python-pandas)) + (native-inputs (list python-setuptools python-wheel python-toml)) (home-page "https://github.com/Maarten-vd-Sande/qnorm") (synopsis "Quantile normalization") (description "This tool implements quantile normalization. It properly @@ -11935,7 +11983,9 @@ low-level X clients. It is written entirely in Python.") (build-system pyproject-build-system) (native-inputs (list python-pytest - python-six)) ; required for conversion, not at run-time + python-setuptools + python-six ; required for conversion, not at run-time + python-wheel)) (home-page "https://docs.python.org/3/library/functools.html#functools.singledispatch") (synopsis "Backport of singledispatch feature from Python 3.4") @@ -12363,7 +12413,8 @@ plugin for flake8 to check PEP-8 naming conventions.") "00zahgw9zjfqwf0218bj5k732aibnn68cq1p8f0wmbirb7fy5k31")))) (build-system pyproject-build-system) (propagated-inputs (list python-packaging)) - (native-inputs (list python-pypa-build python-pytest python-tomli)) + (native-inputs (list python-pypa-build python-pytest python-setuptools + python-tomli python-wheel)) (home-page "https://github.com/FFY00/python-pyproject-metadata") (synopsis "Dataclass for PEP 621 metadata") (description "This project does not implement the parsing of @@ -13134,7 +13185,8 @@ the @code{sendfile(2)} system call.") ;; Using Pytest instead of the Makefile causes the command line tests to ;; fail on unknown Pytest arguments. (arguments (list #:test-flags #~(list "-k" "not TestCommandLineParser"))) - (native-inputs (list python-psutil python-pytest)) + (native-inputs (list python-psutil python-pytest python-setuptools + python-wheel)) (propagated-inputs (list python-pyopenssl python-pysendfile)) (home-page "https://github.com/giampaolo/pyftpdlib/") (synopsis "Asynchronous and scalable Python FTP server library") @@ -13881,7 +13933,8 @@ asyncio.") "0yv1wayrw9g6k0c2f721kha7wsv0s1fdlxpf5x7f34iqzq9z272h")))) (build-system pyproject-build-system) (propagated-inputs (list python-numpy python-pyparsing)) - (native-inputs (list python-hypothesis python-pytest)) + (native-inputs (list python-hypothesis python-pytest python-setuptools + python-wheel)) (home-page "https://github.com/mapbox/snuggs") (synopsis "Snuggs are S-expressions for Numpy") (description "Snuggs are S-expressions for Numpy.") @@ -14326,7 +14379,7 @@ domains support.") (build-system pyproject-build-system) (arguments (list #:tests? #f)) - (native-inputs (list python-setuptools-scm)) + (native-inputs (list python-setuptools python-setuptools-scm python-wheel)) (home-page "https://github.com/jaraco/path") (synopsis "Object-oriented file system path manipulation library") (description "@code{path} (formerly @code{path.py}) implements path @@ -14932,7 +14985,9 @@ significantly better performance.") python-pylint python-pytest python-pytest-benchmark - python-pytest-cache)) + python-pytest-cache + python-setuptools + python-wheel)) (home-page "https://github.com/horejsek/python-fastjsonschema") (synopsis @@ -15015,7 +15070,7 @@ systems, as a command line tool, and as a Python library.") (delete-file-recursively "bleach/_vendor/html5lib"))))) (build-system pyproject-build-system) (propagated-inputs (list python-html5lib python-tinycss2 python-webencodings)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/mozilla/bleach") (synopsis "Whitelist-based HTML-sanitizing tool") (description "Bleach is an easy whitelist-based HTML-sanitizing tool.") @@ -15551,7 +15606,7 @@ simulation, statistical modeling, machine learning and much more.") (base32 "1r9ixxnish9j3dq4h0z0cwlkr4f5lgi6d8mhbzw59hbbjlmp2qhd")))) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (build-system pyproject-build-system) (arguments (list #:test-flags @@ -15752,7 +15807,7 @@ This allows one to make simple text-mode user interfaces on Unix-like systems") (build-system pyproject-build-system) (propagated-inputs (list python-pydantic python-srsly python-typing-extensions)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/explosion/confection") (synopsis "Config system for Python") (description "Confection is a lightweight library that offers a @@ -15816,7 +15871,8 @@ config files.") (propagated-inputs (list java-antlr4-runtime-python python-pydevd python-pyyaml)) - (native-inputs (list icedtea antlr4 python-pytest python-pytest-mock)) + (native-inputs (list icedtea antlr4 python-pytest python-pytest-mock + python-setuptools python-wheel)) (home-page "https://github.com/omry/omegaconf") (synopsis "Flexible configuration system") (description "OmegaConf is a hierarchical configuration system and @@ -15836,7 +15892,7 @@ consistent API regardless of how the configuration was created.") "17vky4ihicbf7nggg30xs7h3g5rxzwgch8vilnnrvdaacszkq2qv")))) (build-system pyproject-build-system) (native-inputs - (list python-mock python-pytest)) + (list python-mock python-pytest python-setuptools python-wheel)) (synopsis "Replacement for argparse") (description "A drop-in replacement for argparse that allows options to also be set via config files and/or environment variables.") @@ -16951,6 +17007,7 @@ in pure Python.") (base32 "14hwk9j5zjc8rvirw95mrb07zdnpjaxjx2mj3rnq8pnlyaa809r4")))) (build-system pyproject-build-system) + (arguments (list #:tests? #f)) ; No tests in PyPi tarball. (native-inputs (list python-poetry-core)) (home-page "https://github.com/srstevenson/xdg-base-dirs") @@ -17433,7 +17490,8 @@ synchronously (wait until ready).") python-scikit-learn python-scipy python-toolz)) - (native-inputs (list python-cython python-pytest python-setuptools-scm)) + (native-inputs (list python-cython python-pytest python-setuptools-scm + python-setuptools python-wheel)) (home-page "https://pypi.org/project/cesium/") (synopsis "Library for time-series feature extraction and processing") (description @@ -17510,7 +17568,8 @@ ISO 8859, etc.).") (lambda _ (setenv "QT_QPA_PLATFORM" "offscreen")))))) (native-inputs - (list python-pytest python-pytest-cov python-pytest-xdist)) + (list python-pytest python-pytest-cov python-pytest-xdist + python-setuptools python-wheel)) (inputs (list qtbase-5)) (propagated-inputs @@ -17699,7 +17758,9 @@ checking library.") python-pytest python-pytest-cov python-pytest-dependency - python-tomli)) + python-tomli + python-setuptools + python-wheel)) (arguments `(#:phases (modify-phases %standard-phases @@ -18823,7 +18884,9 @@ def get_requires_for_build_sdist(config_settings=None): python-pytest-flake8 python-pytest-mypy ;; For the version number - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://github.com/jaraco/inflect") (synopsis "Correctly generate plurals, singular nouns, ordinals, indefinite articles") (description @@ -20873,7 +20936,8 @@ from the header, as well as section details and data available.") (propagated-inputs (list pigz python-isal python-typing-extensions)) (native-inputs - (list python-pytest python-pytest-timeout python-setuptools-scm)) + (list python-pytest python-pytest-timeout python-setuptools-scm + python-setuptools python-wheel)) (home-page "https://github.com/marcelm/xopen/") (synopsis "Open compressed files transparently") (description "This module provides an @code{xopen} function that works @@ -20957,6 +21021,7 @@ efficient as possible on all supported Python versions.") "1gqfh00ics2k1sm5g46l3bi8cl5fc5d1cwzh1ylvcxvdvypklqc7")))) (build-system pyproject-build-system) (arguments (list #:tests? #false)) ;there are none + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/noahmorrison/chevron") (synopsis "Mustache templating language renderer") (description "This package provides a Python implementation of the @@ -21009,7 +21074,9 @@ Mustache templating language renderer.") python-pyarrow python-pytest python-pytest-runner - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://www.duckdb.org") (synopsis "DuckDB embedded database") (description "DuckDB is an in-process SQL OLAP database management @@ -21868,6 +21935,7 @@ point is the point of maximum curvature.") python-jinja2 python-pluggy python-pygments + python-setuptools ; For pkg_resources. python-tomli)) (native-inputs (list python-flake8 @@ -22082,7 +22150,8 @@ while only declaring the test-specific fields.") ;; Disable tests that require internet. (list #:test-flags '(list "-k" "not net"))) (native-inputs - (list python-pytest python-testfixtures python-click python-requests)) + (list python-pytest python-testfixtures python-click python-requests + python-setuptools python-wheel)) (home-page "https://github.com/pndurette/gTTS") (synopsis "Google Translate text-to-speech interface") (description @@ -22574,7 +22643,9 @@ manipulation, or @code{stdout}.") python-mypy python-pytest python-pytz - python-simplejson)) + python-simplejson + python-setuptools + python-wheel)) (home-page "https://github.com/marshmallow-code/marshmallow") (synopsis "Convert complex datatypes to and from native Python datatypes") (description "@code{marshmallow} provides a library for converting complex @@ -22636,7 +22707,9 @@ datatypes to and from native Python datatypes.") python-marshmallow python-mypy python-pytest - python-pyyaml)) + python-pyyaml + python-setuptools + python-wheel)) (home-page "https://github.com/marshmallow-code/apispec") (synopsis "Swagger/OpenAPI specification generator") (description "@code{python-apispec} is a pluggable API specification @@ -22655,7 +22728,7 @@ Swagger.") (base32 "1wyw30402xq2a8icrsjmy9v43jyvawcjd85ccb2zicqlg4k5pcqd")))) (build-system pyproject-build-system) - (propagated-inputs (list python-apispec)) + (propagated-inputs (list python-apispec python-setuptools)) (native-inputs (list python-bottle python-flake8 @@ -22665,7 +22738,8 @@ Swagger.") python-pytest python-pyyaml python-tornado - python-tox)) + python-tox + python-wheel)) (home-page "https://github.com/marshmallow-code/apispec-webframeworks") (synopsis "Web framework plugins for apispec") (description "This package provides plugins for using @code{apispec} with @@ -23354,7 +23428,9 @@ particularly convenient for use in tests.") python-pytest-mypy python-setuptools-scm python-types-freezegun - python-types-pytz)) + python-types-pytz + python-setuptools + python-wheel)) (propagated-inputs (list python-jaraco-functools python-pytz)) (home-page "https://github.com/jaraco/tempora") (synopsis "Python date and time objects and routines") @@ -23530,7 +23606,9 @@ queue.") (list python-pytest python-pytest-asyncio python-pytest-repeat - python-pytest-timeout)) + python-pytest-timeout + python-setuptools + python-wheel)) (home-page "https://zict.readthedocs.io/en/latest/") (synopsis "Composable mutable mapping tools") (description "This package provides abstract @code{MutableMapping} classes @@ -23716,7 +23794,7 @@ files, and Makefiles.") (base32 "1q7ajgqjfivxqsqgnhp4lc4p6jxyh4zprcsdbpd6dw54inaf0av5")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/Suor/whatever") (synopsis "Make anonymous functions by partial application of operators") (description "@code{whatever} provides an easy way to make anonymous @@ -23738,7 +23816,7 @@ functions by partial application of operators.") (file-name (git-file-name name version)))) (build-system pyproject-build-system) (native-inputs - (list python-pytest python-whatever)) + (list python-pytest python-whatever python-setuptools python-wheel)) (home-page "https://github.com/Suor/funcy") (synopsis "Functional tools") (description "@code{funcy} is a library that provides functional tools. @@ -24126,7 +24204,7 @@ working with iterables.") "040i6bjqvl33j30v865shsk30s3h7f16pqwiaj5kig857dfmqm4r")))) (build-system pyproject-build-system) (propagated-inputs (list python-bitarray python-xxhash)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/joseph-fox/python-bloomfilter") (synopsis "Bloom filter") (description "This package provides a scalable Bloom filter implemented in @@ -25063,7 +25141,8 @@ tool).") python-msgpack python-typing-extensions)) (native-inputs - (list python-cython python-pytest python-setuptools-scm)) + (list python-cython python-pytest python-setuptools-scm + python-setuptools python-wheel)) (home-page "https://github.com/zarr-developers/numcodecs") (synopsis "Buffer compression and transformation codecs") (description @@ -25169,6 +25248,7 @@ N-dimensional arrays for Python.") python-pandas python-scipy python-scikit-learn + python-setuptools ; For pkg_resources. python-zarr)) (native-inputs (list python-boltons @@ -25206,7 +25286,7 @@ object-oriented library such as @code{scikit-learn}.") (with-directory-excursion "/tmp" (invoke "nosetests" "-v")))))))) (native-inputs - (list python-nose)) + (list python-nose python-setuptools python-wheel)) (home-page "https://pypi.org/project/dill/") (synopsis "Serialize all of Python") (description "Dill extends Python's @code{pickle} module for serializing @@ -25258,6 +25338,7 @@ preload_resources\ (invoke "python" "-m" "multiprocess.tests"))))))) (propagated-inputs (list python-dill)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://pypi.org/project/multiprocess/") (synopsis "Multiprocessing and multithreading in Python") (description @@ -25619,7 +25700,8 @@ append on old values. Partd excels at shuffling operations.") (propagated-inputs (list python-aiohttp python-libarchive-c python-requests python-tqdm)) (native-inputs - (list python-pytest python-pytest-mock python-numpy)) + (list python-pytest python-pytest-mock python-numpy python-setuptools + python-wheel)) (home-page "https://github.com/intake/filesystem_spec") (synopsis "File-system specification") (description "The purpose of this package is to produce a template or @@ -25845,6 +25927,7 @@ RFC 8265 and RFC 8266.") (base32 "0ga3b0m8lfsv1m3260p83lhis52yvz3d42q8gip4gfj823849hnj")))) (build-system pyproject-build-system) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/abseil/abseil-py") (synopsis "Abseil Python common libraries") (description @@ -26149,7 +26232,8 @@ programs that do multiple things at the same time with parallelized I/O.") (sha256 (base32 "15wa66cs165wawh4pi808ac43n67b8jqddi5ppdcbkj5gfi68hpi")))) (build-system pyproject-build-system) - (native-inputs (list python-attrs python-pytest)) + (native-inputs (list python-attrs python-pytest python-setuptools + python-wheel)) (propagated-inputs (list python-mypy python-mypy-extensions python-trio python-typing-extensions)) @@ -27291,7 +27375,7 @@ scripts to load entry points more quickly.") (when tests? (invoke "python" "-m" "unittest" "discover" "-v"))))))) ;; ModuleNotFoundError: No module named 'poetry' - (native-inputs (list python-poetry-core)) + (native-inputs (list python-poetry-core python-six)) (home-page "https://github.com/vlasovskikh/funcparserlib") (synopsis "Recursive descent parsing library based on functional combinators") @@ -27575,7 +27659,9 @@ but portable.") python-pytest-cov python-pytest-mock python-pytest-sugar - python-pytest-toolbox)) + python-pytest-toolbox + python-setuptools + python-wheel)) (home-page "https://github.com/samuelcolvin/watchgod") (synopsis "Simple, modern file watching and code reload in Python") (description @@ -28838,7 +28924,7 @@ placement and scaling of SVG figures and adding markers, such as labels.") ;; Avoid python-pytest-coverage #:test-flags '(list "-c /dev/null"))) (propagated-inputs (list python-six python-wcwidth)) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/jquast/blessed") (synopsis "Wrapper around terminal capabilities") (description @@ -29105,7 +29191,8 @@ It adds a simple and readable way to print stuff during development.") (list python-dateutil python-pytz python-regex python-ruamel.yaml python-tzlocal)) (native-inputs - (list python-flake8 python-pytest python-parameterized tzdata-for-tests)) + (list python-flake8 python-pytest python-parameterized tzdata-for-tests + python-setuptools python-wheel)) (arguments `(#:phases (modify-phases %standard-phases @@ -29802,7 +29889,9 @@ older versions of Python and so are packaged here.") python-sphinx python-sphinx-autobuild python-sphinx-rtd-theme - python-tox)) + python-tox + python-setuptools + python-wheel)) (home-page "https://github.com/Delgan/loguru") (synopsis "Python logging made (stupidly) simple") (description "Python logging made (stupidly) simple") @@ -31896,6 +31985,7 @@ Python, with static types.") "0cas3cjkhrvsz2rmqnhqiihy9j79wxi9xbih8jk0p9r48c2q3iyy")))) (build-system pyproject-build-system) (propagated-inputs (list python-types-urllib3)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/python/typeshed") (synopsis "Typing stubs for requests") (description "This package provides typing stubs for requests.") @@ -31928,6 +32018,7 @@ Python, with static types.") (base32 "0zcipjdnbnc8ymk8mh9n5mypa0qr03rqj98lbmahldcdrrap6md1")))) (build-system pyproject-build-system) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/python/typeshed") (synopsis "Typing stubs for urllib3") (description "This package provides typing stubs for urllib3.") @@ -31945,6 +32036,7 @@ Python, with static types.") "1vdwp1jjg27b22qxgm49v21nb8vm1iki3bfsm0fnq2rsz5alfwz2")))) (build-system pyproject-build-system) (propagated-inputs (list python-importlib-resources)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/JelleZijlstra/typeshed_client") (synopsis "Library for accessing stubs in typeshed") (description @@ -32349,7 +32441,9 @@ than trying to just split strings.") python-pytest-timeout python-mock python-numpy - python-psutil)) + python-psutil + python-setuptools + python-wheel)) (home-page "https://github.com/explosion/srsly") (synopsis "Serialization utilities for Python") (description "This package bundles some of the best Python serialization @@ -32578,7 +32672,7 @@ parsing rules in a single place.") (base32 "1irw4sqrsgpc0ibxdv1hlx0d0jr1fqs48bj6mpfylzqkag9ywlfj")))) (build-system pyproject-build-system) (native-inputs - (list python-pytest)) + (list python-pytest python-setuptools python-wheel)) (home-page "https://github.com/cgdeboer/iteround") (synopsis "Sum-safe rounding for Iterables") (description "Iteround is a standard library sum-safe rounding library for @@ -32692,7 +32786,10 @@ object, which can be useful if you want to force your objects into a table.") python-mock python-numpy python-pytest - python-pyyaml)) + python-pyyaml + python-setuptools + python-wheel + python-toml)) (home-page "https://github.com/seperman/deepdiff") (synopsis "Deep difference and search of any Python object/data") (description @@ -32721,7 +32818,9 @@ other.") (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)))))) (native-inputs (list python-setuptools-scm - python-pytest)) + python-pytest + python-setuptools + python-wheel)) (home-page "https://deepmerge.readthedocs.io/en/latest/") (synopsis "Merge nested data structures") (description @@ -33146,7 +33245,7 @@ versa. Extended WKB/WKT are also supported.") (base32 "1c0xx3p3lzrlyqhmccyq9c50f8v9pqk2992gb4nl50h2yy1m3s8v")))) (build-system pyproject-build-system) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (home-page "https://nedbatchelder.com/code/cog") (synopsis "Content generation tool that leverages Python") (description "Cog is a file generation tool. It allows using pieces of @@ -33556,7 +33655,10 @@ path.") python-ruamel.yaml python-slugify python-tornado - tzdata-for-tests)) + tzdata-for-tests + python-setuptools + python-wheel + python-toml)) (home-page "https://github.com/spanezz/staticsite") (synopsis "Static site generator") (description "Statistic is a static site generator based on Markdown and @@ -33632,8 +33734,9 @@ markdown-compliant strings.") (base32 "1v5c9bim8af6g8kgxp2dhm96n5vkr8sqi56w0bdh1xy49v03lw3g")))) (build-system pyproject-build-system) - (propagated-inputs (list python-pillow)) + (propagated-inputs (list python-pillow python-setuptools)) (inputs (list zbar)) + (native-inputs (list python-wheel)) (home-page "https://github.com/Polyconseil/zbarlight") (synopsis "Simple Python wrapper for the zbar barcode library") (description "Zbarlight is a simple wrapper for the zbar library. It can @@ -33652,6 +33755,7 @@ read all zbar supported codes.") "0bqkrjxp2fbz34x3wxkxji39kxinypzg8q2994sibiay29mpipxb")))) (build-system pyproject-build-system) (inputs (list openssl)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://zeroc.com") (synopsis "RPC framework") (description diff --git a/gnu/packages/qt.scm b/gnu/packages/qt.scm index e8654eee44..08bc47fded 100644 --- a/gnu/packages/qt.scm +++ b/gnu/packages/qt.scm @@ -3220,7 +3220,8 @@ instances.") (native-inputs (list python-wrapper)) (propagated-inputs - (list python-toml python-packaging python-ply)) + (list python-toml python-packaging python-ply python-setuptools + python-wheel)) (home-page "https://www.riverbankcomputing.com/software/sip/intro") (synopsis "Python binding creator for C and C++ libraries") (description diff --git a/gnu/packages/rpc.scm b/gnu/packages/rpc.scm index a88c79f8b9..83c951c337 100644 --- a/gnu/packages/rpc.scm +++ b/gnu/packages/rpc.scm @@ -253,7 +253,7 @@ type information of gRPC.") (inputs (list abseil-cpp-20211102.0 c-ares grpc-for-python-grpcio openssl re2 zlib)) (native-inputs - (list python-cython)) + (list python-cython python-setuptools python-wheel)) (propagated-inputs (list python-six)) (home-page "https://grpc.io") diff --git a/gnu/packages/serialization.scm b/gnu/packages/serialization.scm index 9c114aaf39..6d6c4386c9 100644 --- a/gnu/packages/serialization.scm +++ b/gnu/packages/serialization.scm @@ -656,7 +656,9 @@ RPC system. Think JSON, except binary. Or think Protocol Buffers, except faste python-mypy python-pytest python-setuptools-scm - python-versioneer)) + python-versioneer + python-setuptools + python-wheel)) (propagated-inputs (list python-pyyaml python-tomli python-tomli-w)) (home-page "https://jcristharif.com/msgspec/") (synopsis "Fast serialization/validation library") diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm index 173accd768..5d70da8fec 100644 --- a/gnu/packages/sphinx.scm +++ b/gnu/packages/sphinx.scm @@ -371,7 +371,9 @@ Blog, News or Announcements section to a Sphinx website.") (propagated-inputs (list python-docutils-0.15 python-sphinx-4)) (native-inputs (list python-pytest - python-pytest-regressions)) + python-pytest-regressions + python-setuptools + python-wheel)) (home-page "https://github.com/executablebooks/sphinx-panels") (synopsis "Sphinx extension for creating panels in a grid layout") (description diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index dc620b13a1..9b314c3773 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2049,7 +2049,7 @@ and fast file reading.") ;; Remove dataset with unclear license. (lambda _ (delete-file "vega_datasets/_data/la-riots.csv")))))) - (native-inputs (list python-pytest)) + (native-inputs (list python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-pandas)) (home-page "https://github.com/altair-viz/vega_datasets") (synopsis "Example datasets used by Vega-related projects") @@ -2082,6 +2082,7 @@ and Vega-Lite examples.") python-jsonschema python-numpy python-pandas + python-setuptools python-toolz python-typing-extensions)) (native-inputs (list python-black @@ -2115,7 +2116,8 @@ and Vega-Lite examples.") (lambda _ ;; Cython extensions have to be built before running the tests. (invoke "python" "setup.py" "build_ext" "--inplace")))))) - (propagated-inputs (list python-cython python-numpy)) + (propagated-inputs (list python-cython python-numpy python-setuptools + python-wheel)) (native-inputs (list python-nose)) (home-page "http://github.com/daleroberts/hdmedians") (synopsis "High-dimensional medians") @@ -2165,7 +2167,9 @@ machine learning, computer vision, and high-dimensional statistics.") python-scipy python-typing-extensions python-xarray - python-xarray-einstats)) + python-xarray-einstats + python-setuptools + python-wheel)) (home-page "https://github.com/arviz-devs/arviz") (synopsis "Exploratory analysis of Bayesian models") (description @@ -2307,7 +2311,9 @@ building design matrices.") python-pytest python-pytest-randomly python-pytest-xdist - python-setuptools-scm)) + python-setuptools-scm + python-setuptools + python-wheel)) (home-page "https://statsmodels.sourceforge.net/") (synopsis "Statistical modeling and econometrics in Python") (description diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm index 081ef19af1..a336b33d34 100644 --- a/gnu/packages/terminals.scm +++ b/gnu/packages/terminals.scm @@ -99,6 +99,7 @@ #:use-module (gnu packages popt) #:use-module (gnu packages protobuf) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages qt) @@ -244,8 +245,8 @@ managers.") (substitute* "tests/pty_test.py" (("python3") (search-input-file inputs "/bin/python3")))))))) (native-inputs - ;; For tests. - (list python-pytest)) + (list python-pytest ; For tests. + python-setuptools python-wheel)) (home-page "https://asciinema.org") (synopsis "Terminal session recorder") (description diff --git a/gnu/packages/time.scm b/gnu/packages/time.scm index 5c8f65a1e6..33b0457af2 100644 --- a/gnu/packages/time.scm +++ b/gnu/packages/time.scm @@ -245,6 +245,7 @@ datetime module, available in Python 2.3+.") "1wg3f3imjq3snvjccv64h5498pqv9xz664xhni7bsh8mnay91p83")))) (build-system pyproject-build-system) (propagated-inputs (list python-dateutil python-pytz)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/jmcantrell/python-dateutils") (synopsis "Various utilities for working with date and datetime objects") (description @@ -328,7 +329,7 @@ Python datetime objects.") ;; It's optional, remove this constrain where python-pytz is updated. #:test-flags #~(list "-k" "not test_with_pytz"))) (native-inputs - (list python-poetry-core python-pytest)) + (list python-poetry-core python-pytest python-setuptools)) (propagated-inputs (list python-cffi python-h3-3 python-numba python-numpy python-pytz)) (home-page "https://timezonefinder.michelfe.it/gui") diff --git a/gnu/packages/tor.scm b/gnu/packages/tor.scm index 8ae2118188..ec4fb58f38 100644 --- a/gnu/packages/tor.scm +++ b/gnu/packages/tor.scm @@ -50,6 +50,7 @@ #:use-module (gnu packages glib) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-check) #:use-module (gnu packages python-crypto) #:use-module (gnu packages python-web) @@ -446,7 +447,8 @@ Potential client and exit connections are scrubbed of sensitive information.") "1542g6alycwlmvndxcijzn4d5lgycmxxb78gqd8qwgm9kw0fnr3q")))) (build-system pyproject-build-system) (native-inputs - (list (list glib "bin"))) ; for glib-compile-schemas. + (list python-setuptools python-wheel + (list glib "bin"))) ; for glib-compile-schemas. (inputs (list python-fire python-psutil diff --git a/gnu/packages/tree-sitter.scm b/gnu/packages/tree-sitter.scm index 117c2acb0c..f4e897fbc5 100644 --- a/gnu/packages/tree-sitter.scm +++ b/gnu/packages/tree-sitter.scm @@ -29,6 +29,7 @@ #:use-module (gnu packages graphviz) #:use-module (gnu packages icu4c) #:use-module (gnu packages node) + #:use-module (gnu packages python-build) #:use-module (guix build-system cargo) #:use-module (guix build-system gnu) #:use-module (guix build-system pyproject) @@ -86,7 +87,8 @@ name))))))))) (inputs (list tree-sitter)) (native-inputs - (list tree-sitter-python tree-sitter-javascript)) + (list tree-sitter-python tree-sitter-javascript + python-setuptools python-wheel)) (home-page "https://github.com/tree-sitter/py-tree-sitter") (synopsis "Python bindings to the Tree-sitter parsing library") (description "This package provides Python bindings to the diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index 801c2602e4..ea3dd7c793 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -5051,7 +5051,7 @@ video from a Wayland session.") "1z9j3r9pm4rdynlmhgsgnwnnaqw5274yfy4kyillgd77msnpbhaw")))) (build-system pyproject-build-system) (native-inputs - (list gettext-minimal pkg-config)) + (list gettext-minimal pkg-config python-setuptools python-wheel)) (inputs (list python-pygobject gtk+ diff --git a/gnu/packages/vim.scm b/gnu/packages/vim.scm index d58b022123..a0c738e768 100644 --- a/gnu/packages/vim.scm +++ b/gnu/packages/vim.scm @@ -65,6 +65,7 @@ #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-xyz) #:use-module (gnu packages ruby) #:use-module (gnu packages serialization) @@ -935,7 +936,8 @@ through its msgpack-rpc API.") (base32 "00kxlb3f1k7iaxzpsr07scavmnyg8c1jmicmr13mfk2lcdac6g2b")))) (build-system pyproject-build-system) - (propagated-inputs (list python-psutil python-pynvim)) + (propagated-inputs (list python-psutil python-pynvim python-setuptools)) + (native-inputs (list python-wheel)) (home-page "https://github.com/mhinz/neovim-remote") (synopsis "Control nvim processes using `nvr` commandline tool") (description "This package provide a `nvr` command, which can open File in diff --git a/guix/build-system/pyproject.scm b/guix/build-system/pyproject.scm index 2a2c3af3f3..94b9d79692 100644 --- a/guix/build-system/pyproject.scm +++ b/guix/build-system/pyproject.scm @@ -52,7 +52,12 @@ "Return the default Python package." ;; Lazily resolve the binding to avoid a circular dependency. (let ((python (resolve-interface '(gnu packages python)))) - (module-ref python 'python-toolchain))) + ;; We are using python-sans-pip-wrapper, because it does not contain + ;; setuptools. This allows us to skip the dependency on setuptools for + ;; packages which don’t need it. And it allows us to more easily swap + ;; out setuptools if a different version is required. + ;; Using python-toolchain here might cause dependency cycles. + (module-ref python 'python-sans-pip-wrapper))) (define sanity-check.py (search-auxiliary-file "python/sanity-check.py")) |