diff options
| author | Nicolas Graves <ngraves@ngraves.fr> | 2025-03-31 08:18:39 +0200 |
|---|---|---|
| committer | Andreas Enge <andreas@enge.fr> | 2025-04-16 11:46:24 +0200 |
| commit | 4d8be834404b05b8773fbc51039e9bef9f767b46 (patch) | |
| tree | 8e1bcd26a0c93d515560fc0261be18719ca7f23e | |
| parent | 0b875355d56de235871dfdc81aaab3394f4668c2 (diff) | |
gnu: seqmagick: Update to 0.8.6-0.dee6ab9.
* gnu/packages/bioinformatics.scm (seqmagick): Update to 0.8.6-0.dee6ab9.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 44 |
1 files changed, 24 insertions, 20 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 80cba678c4..da8ec07f1b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12079,30 +12079,34 @@ bioinformatics file formats, sequence alignment, and more.") ("bzip2" ,bzip2))))) (define-public seqmagick - (package - (name "seqmagick") - (version "0.8.4") - (source - (origin - (method url-fetch) - (uri (pypi-uri "seqmagick" version)) - (sha256 - (base32 - "0c6skyig8fyylnbj4597pjj9h0dn36rkxrhwd34yrsc6k6f7r8a0")))) - (build-system pyproject-build-system) - (inputs - (list python-biopython python-pygtrie)) - (native-inputs - (list python-pytest python-setuptools python-wheel)) - (home-page "https://github.com/fhcrc/seqmagick") - (synopsis "Tools for converting and modifying sequence files") - (description - "Bioinformaticians often have to convert sequence files between formats + (let ((commit "dee6ab9839cff317142e55678bb12c4c9ab2150f") + (revision "0")) + (package + (name "seqmagick") + (version (git-version "0.8.6" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/fhcrc/seqmagick") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0syipb7m44s5bqrhs17bwr28svy2s83j8d93kbazav92jzszzsw4")))) + (build-system pyproject-build-system) + (inputs + (list python-biopython python-pygtrie)) + (native-inputs + (list python-nose python-setuptools python-wheel)) + (home-page "https://github.com/fhcrc/seqmagick") + (synopsis "Tools for converting and modifying sequence files") + (description + "Bioinformaticians often have to convert sequence files between formats and do little manipulations on them, and it's not worth writing scripts for that. Seqmagick is a utility to expose the file format conversion in BioPython in a convenient way. Instead of having a big mess of scripts, there is one that takes arguments.") - (license license:gpl3))) + (license license:gpl3)))) (define-public seqtk (package |