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| author | Hugo Buddelmeijer <hugo@buddelmeijer.nl> | 2025-09-23 21:51:26 +0200 |
|---|---|---|
| committer | Sharlatan Hellseher <sharlatanus@gmail.com> | 2025-09-28 00:43:28 +0100 |
| commit | a6075f65c8c3465d343868f6a639a693c72cc5be (patch) | |
| tree | db2624de0a05ebb8bd226a17b8bdae415927bbd6 | |
| parent | c6a808735a1582de3b1c2f80ab8cc7548ae0d02d (diff) | |
gnu: python-taggd: Update to 0.4.0.
* gnu/packages/bioinformatics.scm (python-taggd): Update to 0.4.0.
[origin, homepage]: Change to "https://github.com/jfnavarro/taggd"
[source]: Remove out-dated snippet.
[arguments] <test-flags>: Reenable fixed test.
[propagated-inputs]: Add python-tqdm, python-aiofiles, python-dnaio,
python-types-aiofiles, and python-types-tqdm.
Change-Id: I8c1c445bdf1b463b9ffd16602001608a3c9d4fcd
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 23 |
1 files changed, 11 insertions, 12 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5d218e6a69..3c2b5d4f5e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12165,26 +12165,19 @@ interpretation.") (define-public python-taggd (package (name "python-taggd") - (version "0.3.6") + (version "0.4.0") (source (origin (method git-fetch) (uri (git-reference - (url "https://github.com/SpatialTranscriptomicsResearch/taggd") + (url "https://github.com/jfnavarro/taggd") (commit version))) (file-name (git-file-name name version)) (sha256 (base32 - "0j19ah81z7aqrdljah9hyarp91gvgbk63pz6fz3pdpksy1yqyi6k")) - (modules '((guix build utils))) - (snippet - '(for-each delete-file - (find-files "taggd" "\\.c$"))))) + "17hi1vs1qwhxx8jnradnl9k471li6fjb6w5sljkpzjxy7rkxwb85")))) (build-system pyproject-build-system) (arguments (list - #:test-flags - ;; AssertionError: 0 is not true : Running Normal BAM test failed. - #~(list "-k" "not test_normal_bam_run") #:phases #~(modify-phases %standard-phases (add-before 'check 'remove-local-taggd @@ -12193,10 +12186,16 @@ interpretation.") ;; taggd when running tests. (delete-file-recursively "taggd")))))) (propagated-inputs - (list python-numpy python-pysam)) + (list python-numpy + python-pysam + python-tqdm + python-aiofiles + python-dnaio + python-types-aiofiles + python-types-tqdm)) (native-inputs (list python-cython python-pytest python-setuptools)) - (home-page "https://github.com/SpatialTranscriptomicsResearch/taggd") + (home-page "https://github.com/jfnavarro/taggd") (synopsis "Genetic barcode demultiplexing") (description "This package provides TagGD barcode demultiplexing utilities for Spatial Transcriptomics data.") |