gnu: build-system/pyproject: Add missing native-inputs.

* gnu/packages/astronomy.scm (python-drms, python-spherical-geometry,
python-asdf-coordinates-schemacs, python-asdf-wcs-schemas, python-rad)
[native-inputs]: Add python-setuptools and python-wheel.
(python-casa-formats-io, python-tweakwcs)[native-inputs]: Add
python-setuptools.

* gnu/packages/bioinformatics.scm (python-ega-download-client)
[native-inputs]: Add python-setuptools and python-wheel.

* gnu/packages/databases.scm (datasette)[native-inputs]: Add
python-pip.

* gnu/packages/django.scm (python-django-localflavor,
python-django-contact-form)[native-inputs]: Add python-setuptools and
python-wheel.

* gnu/packages/graphviz.scm (python-uqbar)[native-inputs]: Add
python-setuptools and python-wheel.

* gnu/packages/jupyter.scm (python-jupyterlab-server)[native-inputs]:
Add python-wheel.
(python-nbstripout)[native-inputs]: Add python-setuptools and
python-wheel.

* gnu/packages/machine-learning.scm (python-captum,
python-linear-operator, python-gpytorch)[native-inputs]: Add
python-setuptools.

* gnu/packages/music.scm (abjad, abjad-ext-rmarkers,
abjed-ext-nauert, python-mutagen)[native-inputs]: Add
python-setuptools and python-wheel.

* gnu/packages/package-management.scm
(python-conda-package-handling)[native-inputs]: Add python-setuptools
and python-wheel.
(conda)[native-inputs]: Add python-wheel.

* gnu/packages/python-check.scm (python-pyinstrument,
python-pytest-testmon, python-pytest-trio, python-nbval,
python-pytest-toolbox)[native-inputs]: Add python-setuptools and
python-wheel.
(python-nptyping)[native-inputs]: Add python-setuptools.

* gnu/packages/python-check.scm (python-dask-expr)[native-inputs]:
Add python-setuptools and python-wheel.

* gnu/packages/python-web.scm (parfive, python-aioftp, python-hupper,
python-sanic, python-mechanicalsoup, python-tinycss, python-aiostream,
python-cbor2, gunicorn)[native-inputs]: Add python-setuptools and
python-wheel.

* gnu/packages/python-xyz.scm (python-apprise, python-jaraco-classes,
python-sparse, python-shtab, python-pyan3)[native-inputs]: Add
python-setuptools.
(python-jupytext, python-orderedmultidict, python-identify, python-nodeenv,
python-cfgv, python-zarr, python-multipart, python-nbconvert, python-cram,
python-immutables, python-numpydoc, python-cairosvg, python-unidecode,
python-black, python-multidict, python-mpv-jsonipc, python-humanize,
python-cmd2)[native-inputs]: Add python-setuptools and python-wheel.
(python-partd, python-dask, python-zarr)[native-inputs]: Add
python-wheel.
(python-nbconvert)[propagated-inputs]: Add texlive-etoolbox. Remove
duplicate textlive-jknapltx.
(python-isort)[native-inputs]: Add python-pip.

* gnu/packages/simulation.scm (python-fenics-dijitso)[native-inputs]:
Add python-setuptools and python-wheel.

* gnu/packages/sphinx.scm (python-pydata-sphinx-theme,
python-sphinx-autodoc-typehints)[native-inputs]: Add
python-setuptools.

* gnu/packages/syndication.scm (tuir)[native-inputs]: Add
python-setuptools and python-wheel.

* gnu/packages/terminals.scm (python-halo)[native-inputs]: Add
python-setuptools and python-wheel.

* gnu/packages/time.scm (python-arrow, python-dateutil)
[native-inputs]: Add python-setuptools and python-wheel.

* gnu/packages/version-control.scm (pre-commit)[native-inputs]: Add
python-setuptools and python-wheel.  Remove input labels.

* gnu/packages/virtualization.scm (python-qemu-qmp,
python-transient)[native-inputs]: Add python-setuptools and
python-wheel.

* gnu/packages/xorg.scm (python-xcffib)[native-inputs]: Add
python-setuptools and python-wheel.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

Change-Id: Id61cf8cdc47bd4c2871c0a9c8e9a5bfd51157df0

21 files changed, 240 insertions, 81 deletions

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index de5193d9b8..c05f8e5188 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2041,7 +2041,10 @@ Herschel.")
             (lambda _
               (invoke "python" "setup.py" "build_ext" "--inplace"))))))
     (native-inputs
-     (list python-pytest python-pytest-cov python-pytest-openfiles))
+     (list python-pytest
+           python-pytest-cov
+           python-pytest-openfiles
+           python-setuptools))
     (propagated-inputs
      (list python-astropy python-click python-dask python-numpy))
     (home-page "https://casa-formats-io.readthedocs.io/")
@@ -2254,9 +2257,11 @@ Cesium.")
     (build-system pyproject-build-system)
     (native-inputs
      (list python-astropy
-           python-pytest-astropy
            python-pytest
-           python-setuptools-scm))
+           python-pytest-astropy
+           python-setuptools
+           python-setuptools-scm
+           python-wheel))
     (propagated-inputs (list python-numpy python-pandas))
     (home-page "https://sunpy.org")
     (synopsis "Access astronomical HMI, AIA and MDI data with Python")
@@ -3230,7 +3235,9 @@ python_files = test_*.py"))))))))
     (native-inputs
      (list python-pytest
            python-pytest-astropy-header
-           python-setuptools-scm))
+           python-setuptools
+           python-setuptools-scm
+           python-wheel))
     (inputs
      (list qd))
     (propagated-inputs
@@ -4607,6 +4614,7 @@ of the old packages.")
            python-pytest
            python-pytest-cov
            python-scipy
+           python-setuptools
            python-setuptools-scm))
     (home-page "https://tweakwcs.readthedocs.io/en/latest/")
     (synopsis
@@ -4800,7 +4808,9 @@ package such as asdf-astropy.")
     (native-inputs
      (list python-pytest
            python-pytest-xdist
-           python-setuptools-scm))
+           python-setuptools
+           python-setuptools-scm
+           python-wheel))
     (propagated-inputs
      (list python-asdf))
     (home-page "https://github.com/asdf-format/asdf-coordinates-schemas")
@@ -5053,7 +5063,10 @@ default) to world coordinates.")
       ;; python-rad -> python-roman-datamodels -> python-crds -> python-rad
       #:test-flags #~(list "--ignore=tests/test_schemas.py")))
     (native-inputs
-     (list python-pytest python-setuptools-scm))
+     (list python-pytest
+           python-setuptools
+           python-setuptools-scm
+           python-wheel))
     (propagated-inputs (list python-asdf python-asdf-astropy))
     (home-page "https://github.com/spacetelescope/rad")
     (synopsis "Roman Attribute Dictionary")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 47cca10865..d4a39fd3e1 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2771,8 +2771,14 @@ Python.")
                (("==") ">=")))))))
     (propagated-inputs (list python-htsget python-psutil python-requests
                              python-tqdm python-urllib3))
-    (native-inputs (list python-coverage python-pytest python-pyfakefs
-                         python-responses python-mock))
+    (native-inputs
+     (list python-coverage
+           python-mock
+           python-pyfakefs
+           python-pytest
+           python-responses
+           python-setuptools
+           python-wheel))
     (home-page "https://github.com/EGA-archive/ega-download-client")
     (synopsis "EGA download client")
     (description "PyEGA3 is a tool for viewing and downloading files from
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index a3a550c40c..67e6ced7c3 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -5571,6 +5571,7 @@ mechanism of @code{dogpile}.")
      (list python-beautifulsoup4
            python-black
            python-cogapp
+           python-pip
            python-pytest
            python-pytest-asyncio
            python-pytest-runner
diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm
index 21099f0ff0..4a271eaf0b 100644
--- a/gnu/packages/django.scm
+++ b/gnu/packages/django.scm
@@ -294,6 +294,8 @@ commands, additional database fields and admin extensions.")
               (if tests?
                   (apply invoke "python" "-m" "django" "test" test-flags)
                   (format #t "test suite not run~%")))))))
+    (native-inputs
+     (list python-setuptools python-wheel))
     (propagated-inputs
      (list python-django python-stdnum))
     (home-page "https://django-localflavor.readthedocs.io/en/latest/")
diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm
index 2c23b6abd5..db40b99928 100644
--- a/gnu/packages/graphviz.scm
+++ b/gnu/packages/graphviz.scm
@@ -221,7 +221,9 @@ and not test_sphinx_book_text_broken_strict")))
            python-isort
            python-mypy
            python-pytest
-           python-pytest-cov))
+           python-pytest-cov
+           python-setuptools
+           python-wheel))
     (propagated-inputs
      (list python-black python-sphinx-5 python-unidecode
            (package/inherit python-sphinx-rtd-theme
diff --git a/gnu/packages/jupyter.scm b/gnu/packages/jupyter.scm
index 63af3069ab..9175780b74 100644
--- a/gnu/packages/jupyter.scm
+++ b/gnu/packages/jupyter.scm
@@ -435,7 +435,8 @@ the JupyterLab CSS variables.")
            python-requests-mock
            python-ruamel.yaml
            python-strict-rfc3339
-           python-werkzeug))
+           python-werkzeug
+           python-wheel))
     (home-page "https://jupyter.org")
     (synopsis "Server components for JupyterLab applications")
     (description "JupyterLab Server sits between JupyterLab and Jupyter
@@ -851,7 +852,9 @@ nbshow present a single notebook in a terminal-friendly way
      (list python-pytest
            python-pytest-cram
            python-pytest-flake8
-           python-pytest-runner))
+           python-pytest-runner
+           python-setuptools
+           python-wheel))
     (home-page "https://github.com/kynan/nbstripout")
     (synopsis "Strips outputs from Jupyter and IPython notebooks")
     (description
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 21d58d9aae..d5ce3bfe7d 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -4535,7 +4535,8 @@ Actions for the Lightning suite of libraries.")
                          python-parameterized
                          python-pytest
                          python-pytest-cov
-                         python-scikit-learn))
+                         python-scikit-learn
+                         python-setuptools))
     (home-page "https://captum.ai")
     (synopsis "Model interpretability for PyTorch")
     (description "Captum is a model interpretability and understanding library
@@ -5114,6 +5115,7 @@ inference.")
     (native-inputs (list python-flake8
                          python-flake8-print
                          python-pytest
+                         python-setuptools
                          python-setuptools-scm
                          python-twine))
     (home-page "https://github.com/cornellius-gp/linear_operator/")
@@ -5146,6 +5148,7 @@ linear algebra routines needed for structured matrices (or operators).")
                          python-flake8-print
                          python-nbval
                          python-pytest
+                         python-setuptools
                          python-twine))
     (home-page "https://gpytorch.ai")
     (synopsis "Implementation of Gaussian Processes in PyTorch")
diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index 37fe94b56d..ab3fe97099 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -1698,7 +1698,7 @@ listeners answer questions about music quickly and simply.")
     (inputs
      (list lilypond))
     (native-inputs
-     (list python-pytest))
+     (list python-pytest python-setuptools python-wheel))
     (propagated-inputs
      (list python-quicktions
            python-ply
@@ -1730,7 +1730,7 @@ typographic detail of symbols on the page.")
         (base32 "1y8s55b4mlsigm0xkk6qjpp08c75rv0swvjp0lj3cs6lgqdjxdjl"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list lilypond python-pytest))
+     (list lilypond python-pytest python-setuptools python-wheel))
     (propagated-inputs
      (list abjad))
     (home-page "https://abjad.github.io")
@@ -1755,7 +1755,7 @@ and manipulating rhythms such as accelerandi, taleas, and more.")
         (base32 "0j4pf4h27jm3df0dn2rwkdx6zqcxvr7pqchbaa9rffz7q4hbakmf"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list lilypond python-pytest))
+     (list lilypond python-pytest python-setuptools python-wheel))
     (propagated-inputs
      (list abjad))
     (home-page "https://abjad.github.io")
@@ -3978,7 +3978,11 @@ formats, looking up tracks through metadata and audio fingerprints.")
                  (("( +)@given" all spaces)
                   (string-append spaces "@settings(deadline=None)\n" all))))))))
     (native-inputs
-     (list python-pytest python-hypothesis python-flake8))
+     (list python-flake8
+           python-hypothesis
+           python-pytest
+           python-setuptools
+           python-wheel))
     (home-page "https://mutagen.readthedocs.io/")
     (synopsis "Read and write audio tags")
     (description "Mutagen is a Python module to handle audio metadata.  It
diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index 949c42e274..feed16ebce 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -1143,8 +1143,13 @@ environments.")
     (inputs
      (list libarchive))
     (native-inputs
-     (list python-cython python-pytest python-pytest-cov
-           python-pytest-mock python-mock))
+     (list python-cython
+           python-mock
+           python-pytest
+           python-pytest-cov
+           python-pytest-mock
+           python-setuptools
+           python-wheel))
     (home-page "https://conda.io")
     (synopsis "Create and extract conda packages of various formats")
     (description
@@ -1284,7 +1289,8 @@ extracting, creating, and converting between formats.")
      (list python-coverage
            python-flaky
            python-pytest-timeout
-           python-pytest-xprocess))
+           python-pytest-xprocess
+           python-wheel))
     (home-page "https://github.com/conda/conda")
     (synopsis "Cross-platform, OS-agnostic, system-level binary package manager")
     (description
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 46c8b3414e..e3f0499fec 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -377,7 +377,9 @@ result documents that can be read by tools such as Jenkins or Bamboo.")
            python-greenlet
            python-pytest
            python-pytest-asyncio
-           python-pytest-trio))
+           python-pytest-trio
+           python-setuptools
+           python-wheel))
     (home-page "https://github.com/joerick/pyinstrument")
     (synopsis "Call stack profiler for Python")
     (description
@@ -1169,7 +1171,11 @@ simpler.")
         (base32 "01qhbkb3n8c5c4id94w6b06q9wb7b6a33mqwyrkdfzk5pzv1gcyd"))))
     (build-system pyproject-build-system)
     (arguments (list #:tests? #false)) ;there are none
-    (native-inputs (list python-coverage python-pytest))
+    (native-inputs
+     (list python-coverage
+           python-pytest
+           python-setuptools
+           python-wheel))
     (home-page "https://github.com/tarpas/pytest-testmon")
     (synopsis "Selects tests affected by changed files and methods")
     (description
@@ -1198,7 +1204,11 @@ simpler.")
                            ;; No keyboard interrupt in our build environment.
                            " and not test_actual_test"))))
     (native-inputs
-     (list python-hypothesis python-pytest python-pytest-cov))
+     (list python-hypothesis
+           python-pytest
+           python-pytest-cov
+           python-setuptools
+           python-wheel))
     (propagated-inputs
       (list python-async-generator python-outcome python-pytest python-trio))
     (home-page "https://github.com/python-trio/pytest-trio")
@@ -1487,7 +1497,11 @@ service processes for your tests with pytest.")
                 (substitute* "setup.cfg"
                   ((".*timeout.*") ""))))))))
     (native-inputs
-     (list python-pydantic python-pytest python-pytest-isort))
+     (list python-pydantic
+           python-pytest
+           python-pytest-isort
+           python-setuptools
+           python-wheel))
     (home-page "https://github.com/samuelcolvin/pytest-toolbox")
     (synopsis "Numerous useful plugins for Pytest")
     (description
@@ -1585,7 +1599,11 @@ notebooks.")
               (delete-file "tests/\
 ipynb-test-samples/test-latex-pass-correctouput.ipynb"))))))
     (native-inputs
-     (list python-pytest python-pytest-cov python-sympy))
+     (list python-pytest
+           python-pytest-cov
+           python-setuptools
+           python-sympy
+           python-wheel))
     (propagated-inputs
      (list python-ipykernel python-jupyter-client python-nbformat
            python-six python-coverage))
@@ -2062,6 +2080,7 @@ them using any Python VM with basically no runtime overhead.")
     (native-inputs
      (list python-beartype
            python-mypy
+           python-setuptools
            python-typeguard
            python-wheel))
     (propagated-inputs (list python-numpy python-typing-extensions))
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index dd4cffea8e..f82feab096 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -2157,7 +2157,9 @@ parentdir_prefix = dask_expr-
      ;; package without creating a mutually recursive dependency.
      (list python-dask/bootstrap
            python-pytest
-           python-versioneer))
+           python-setuptools
+           python-versioneer
+           python-wheel))
     (home-page "https://github.com/dask/dask-expr")
     (synopsis "Dask DataFrames with query optimization")
     (description "This is a rewrite of Dask DataFrame that includes query
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 106ef0ec59..4f95a6d992 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -684,10 +684,12 @@ comes with a SOCKS proxy client.")
                 "0l2ijb7yk0820wiyf6zrzx8fhzf8925an7r06mcaw3in1mr6rssq"))))
     (build-system python-build-system)
     (native-inputs
-     (list python-pytest
+     (list python-setuptools
+           python-pytest
            python-pytest-asyncio
            python-pytest-cov
-           python-pytest-runner))
+           python-pytest-runner
+           python-wheel))
     (home-page "https://github.com/vxgmichel/aiostream")
     (synopsis "Generator-based operators for asynchronous iteration")
     (description "@code{aiostream} provides a collection of stream operators that can
@@ -1001,7 +1003,12 @@ to the OVHcloud APIs.")
        (sha256
         (base32 "15y78xcc3zkmvj1mdzz8gyhf3apbl91073kwhzbjk5abc1civwlw"))))
     (build-system pyproject-build-system)
-    (native-inputs (list python-pytest python-pytest-cov python-setuptools-scm))
+    (native-inputs
+     (list python-pytest
+           python-pytest-cov
+           python-setuptools
+           python-setuptools-scm
+           python-wheel))
     (home-page "https://github.com/agronholm/cbor2")
     (synopsis "Concise Binary Object Representation (CBOR) (de)serializer")
     (description "This Python library provides encoding and decoding for the
@@ -1407,7 +1414,9 @@ HTTP servers, RESTful APIs, and web services.")
                          python-pytest-cov
                          python-pytest-localserver
                          python-pytest-socket
-                         python-setuptools-scm))
+                         python-setuptools
+                         python-setuptools-scm
+                         python-wheel))
     (home-page "https://parfive.readthedocs.io/")
     (synopsis "HTTP and FTP parallel file downloader")
     (description
@@ -1594,7 +1603,9 @@ object graph to and from JSON.")
            python-pytest-httpbin
            python-pytest-mock
            python-pytest-runner
-           python-requests-mock))
+           python-requests-mock
+           python-setuptools
+           python-wheel))
     (home-page "https://mechanicalsoup.readthedocs.io/")
     (synopsis "Python library for automating website interaction")
     (description
@@ -3810,9 +3821,14 @@ adapter for use with the Requests library.")
                (base32
                 "0w621mg956m9rn7v39jpwi4gpnpl90pprwl29cp640dahqqv38ms"))))
     (build-system pyproject-build-system)
-    (native-inputs (list python-async-timeout python-pytest
-                         python-pytest-asyncio python-pytest-cov
-                         python-trustme))
+    (native-inputs
+     (list python-async-timeout
+           python-pytest
+           python-pytest-asyncio
+           python-pytest-cov
+           python-setuptools
+           python-trustme
+           python-wheel))
     (propagated-inputs (list python-siosocks))
     (home-page "https://aioftp.readthedocs.io/")
     (synopsis "FTP client/server for asyncio in Python")
@@ -5870,8 +5886,12 @@ library to create slugs from unicode strings while keeping it DRY.")
      (list #:test-flags
            '(list "-k" "not test_speedups")))
     (native-inputs
-     (list python-pytest-cov python-pytest-flake8 python-pytest-isort
-           python-pytest-runner))
+     (list python-pytest-cov
+           python-pytest-flake8
+           python-pytest-isort
+           python-pytest-runner
+           python-setuptools
+           python-wheel))
     (home-page "https://tinycss.readthedocs.io/")
     (synopsis "Complete yet simple CSS parser for Python")
     (description
@@ -6071,6 +6091,7 @@ event loop.  It is implemented in Cython and uses libuv under the hood.")
            python-pytest-cov
            python-sphinx
            texinfo))
+    (propagated-inputs (list python-packaging python-setuptools python-wheel))
     (home-page "https://gunicorn.org/")
     (synopsis "Python WSGI HTTP Server for UNIX")
     (description "Gunicorn ‘Green Unicorn’ is a Python WSGI HTTP
@@ -6863,8 +6884,13 @@ according to the standard set by PasteDeploy")
     (build-system python-build-system)
     (arguments '(#:test-target "pytest"))
     (native-inputs
-     (list python-pytest python-pytest-runner python-watchdog python-mock
-           python-pytest-cov))
+     (list python-mock
+           python-pytest
+           python-pytest-cov
+           python-pytest-runner
+           python-setuptools
+           python-watchdog
+           python-wheel))
     (propagated-inputs
      (list python-pytz))
     (home-page "https://readthedocs.org/projects/hupper")
@@ -7615,11 +7641,13 @@ applications.")
            python-pytest-benchmark
            python-pytest-sanic
            python-sanic-testing
+           python-setuptools
            python-slotscheck
            python-towncrier
            python-tox
            python-types-ujson
-           python-uvicorn))
+           python-uvicorn
+           python-wheel))
     (home-page "https://github.com/sanic-org/sanic/")
     (synopsis "Async Python web server/framework")
     (description
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 398476c59c..30b84d284d 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -326,6 +326,7 @@
                          python-pytest-cov
                          python-pytest-mock
                          python-pytest-xdist
+                         python-setuptools
                          python-wheel))
     (arguments
      (list
@@ -484,8 +485,10 @@ design}.")
            python-isort
            python-ipython-genutils
            python-jupyter-server
+           python-pyaml
            python-pytest
-           python-pyaml))
+           python-setuptools
+           python-wheel))
     (propagated-inputs
      (list python-markdown-it-py
            python-mdit-py-plugins
@@ -5959,6 +5962,7 @@ Capabilities include:
               (base32
                "1x620s4dk4d501pivhlfzbi2d1r5fnm9cssqwkn76f7d8sfk9nyg"))))
     (build-system pyproject-build-system)
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://pypi.org/project/Unidecode/")
     (synopsis "ASCII transliterations of Unicode text")
     (description
@@ -8262,7 +8266,11 @@ and integrated feature-set for programming Python effectively.")
            python-typed-ast
            python-typing-extensions))
     (native-inputs
-     (list python-pytest python-pytest-aiohttp python-setuptools-scm))
+     (list python-pytest
+           python-pytest-aiohttp
+           python-setuptools
+           python-setuptools-scm
+           python-wheel))
     (home-page "https://github.com/psf/black")
     (synopsis "The uncompromising code formatter")
     (description "Black is the uncompromising Python code formatter.")
@@ -8735,8 +8743,12 @@ objects.")
     (propagated-inputs
      (list python-numba python-numpy python-scipy))
     (native-inputs
-     (list python-dask python-importlib-metadata python-pytest
-           python-pytest-black python-pytest-cov))
+     (list python-dask
+           python-importlib-metadata
+           python-pytest
+           python-pytest-black
+           python-pytest-cov
+           python-setuptools))
     (home-page "https://github.com/pydata/sparse/")
     (synopsis "Library for multi-dimensional sparse arrays")
     (description
@@ -9191,7 +9203,12 @@ parse and apply unified diffs.  It has features such as:
                   ;; TODO: unclear why these fail.
                   "-k" "not test_MyClass and not test_my_function")))
     (propagated-inputs (list python-jinja2 python-sphinx))
-    (native-inputs (list python-matplotlib python-pytest python-pytest-cov))
+    (native-inputs
+     (list python-matplotlib
+           python-pytest
+           python-pytest-cov
+           python-setuptools
+           python-wheel))
     (home-page "https://pypi.org/project/numpydoc/")
     (synopsis "Numpy's Sphinx extensions")
     (description "Sphinx extension to support docstrings in Numpy format.")
@@ -9910,7 +9927,7 @@ e.g. copy examples, fetch data, etc.")
          "1kjrxav572j45xvr1iy60zb2g8zqvrinzdkl4ax36js4vczckl8d"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-pytest python-pytest-cov))
+     (list python-pytest python-pytest-cov python-setuptools python-wheel))
     (home-page "https://github.com/aio-libs/multidict/")
     (synopsis "Multidict implementation")
     (description "Multidict is dict-like collection of key-value pairs
@@ -9931,7 +9948,7 @@ where key might be occurred more than once in the container.")
     (propagated-inputs
      (list python-six))
     (native-inputs
-     (list python-flake8 python-pycodestyle))
+     (list python-flake8 python-pycodestyle python-setuptools python-wheel))
     (home-page "https://github.com/gruns/orderedmultidict")
     (synopsis "Python Ordered Multivalue Dictionary - omdict")
     (description "This package contains a library for ordered multivalue
@@ -11713,6 +11730,7 @@ finding unresolved symbols in Python code and their corresponding imports.")
            python-pytest-cov
            python-pytest-flake8
            python-pytest-mypy
+           python-setuptools
            python-setuptools-scm
            python-wheel))
     (propagated-inputs (list python-more-itertools))
@@ -15113,7 +15131,7 @@ pseudo terminal (pty), and interact with both the process and its pty.")
              (invoke "make" "test"))))))
     (build-system python-build-system)
     (native-inputs
-     (list python-coverage which))
+     (list python-coverage python-setuptools python-wheel which))
     (synopsis "Simple testing framework for command line applications")
     (description
      "Cram is a functional testing framework for command line applications.
@@ -15857,8 +15875,9 @@ distribution.  It is not intended as an end-user tool.")
        (uri (pypi-uri "immutables" version))
        (sha256
         (base32 "1x4cinh0xbl6p6p2yfm2s07mxxy3lf0zzai9gqpydk4482bwfdjk"))))
-    (build-system python-build-system)
-    (native-inputs (list python-mypy python-pytest))
+    (build-system pyproject-build-system)
+    (native-inputs
+     (list python-mypy python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/MagicStack/immutables")
     (synopsis "High-performance immutable mapping type for Python")
     (description
@@ -17492,6 +17511,7 @@ time.")
            texlive-collection-basic
            texlive-enumitem
            texlive-environ
+           texlive-etoolbox
            texlive-eurosym
            texlive-etoolbox
            texlive-fancyvrb
@@ -17502,7 +17522,6 @@ time.")
            texlive-hyperref
            texlive-infwarerr
            texlive-jknapltx
-           texlive-jknapltx
            texlive-kvoptions
            texlive-lm
            texlive-lm-math
@@ -24199,6 +24218,7 @@ package attempts to address the shortcomings of @code{isodate}.")
            python-hypothesmith
            python-libcst-minimal
            python-natsort
+           python-pip
            python-poetry-core
            python-pylama
            python-pypa-build
@@ -26954,6 +26974,7 @@ submitting it.")
        (sha256
         (base32 "0ymdwrx544a6gn6wm9dixpgzbfrbpxvcj5ys7m41cgb4lvpvx691"))))
     (build-system pyproject-build-system)
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/iwalton3/python-mpv-jsonipc")
     (synopsis "Python API to control MPV using JSON IPC")
     (description "Python MPV JSONIPC implements an interface similar to
@@ -27579,7 +27600,7 @@ library to allow local file system access via @code{file://} URLs.")
              (when tests?
                (invoke "pytest" "-vv")))))))
     (native-inputs
-     (list python-coverage python-pytest))
+     (list python-coverage python-pytest python-setuptools python-wheel))
     (propagated-inputs
      (list python-editdistance))
     (home-page "https://github.com/chriskuehl/identify")
@@ -27677,7 +27698,11 @@ effort to simplify the man pages with practical examples.")
              ;; This test fails. It tries to open a network socket.
              (invoke "pytest" "-vv" "-k" "not test_smoke"))))))
     (native-inputs
-     (list python-coverage python-mock python-pytest))
+     (list python-coverage
+           python-mock
+           python-pytest
+           python-setuptools
+           python-wheel))
     (home-page "https://ekalinin.github.io/nodeenv/")
     (synopsis "Create isolated node.js environments")
     (description
@@ -27785,7 +27810,7 @@ Let's Encrypt.")
              (when tests?
                (invoke "pytest" "-vv")))))))
     (native-inputs
-     (list python-pytest))
+     (list python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/asottile/cfgv")
     (synopsis "Configuration validation library")
     (description
@@ -27994,7 +28019,8 @@ codecs for use in data storage and communication applications.")
            python-pytest-doctestplus
            python-pytest-timeout
            python-pytest-xdist
-           python-setuptools-scm))
+           python-setuptools-scm
+           python-wheel))
     (home-page "https://github.com/zarr-developers/zarr-python")
     (synopsis "Chunked, compressed, N-dimensional arrays for Python")
     (description
@@ -28428,7 +28454,7 @@ they use the same path.")
     (build-system pyproject-build-system)
     (propagated-inputs
      (list python-locket python-numpy python-pandas python-pyzmq python-toolz))
-    (native-inputs (list python-setuptools))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/dask/partd/")
     (synopsis "Appendable key-value storage")
     (description "Partd stores key-value pairs.  Values are raw bytes.  We
@@ -28578,7 +28604,8 @@ parentdir_prefix = dask-
            python-pytest-rerunfailures
            python-pytest-runner
            python-pytest-xdist
-           python-versioneer))
+           python-versioneer
+           python-wheel))
     (home-page "https://github.com/dask/dask/")
     (synopsis "Parallel computing with task scheduling")
     (description
@@ -29154,7 +29181,7 @@ the Trio framework}.")
           "006vpl19bffy9fn0sssxbfakcvgrx7fhvy6l515fzln7vwpqf7zf"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-freezegun python-pytest))
+     (list python-freezegun python-pytest python-setuptools python-wheel))
     (home-page "https://github.com/jmoiron/humanize")
     (synopsis "Print numerical information in a human-readable form")
     (description "This package provides a Python module that displays numbers
@@ -29671,7 +29698,11 @@ information in various formats.")
      (list python-cairocffi python-cssselect2 python-defusedxml
            python-pillow python-tinycss2))
     (native-inputs
-     (list python-pytest-flake8 python-pytest-isort python-pytest-runner))
+     (list python-pytest-flake8
+           python-pytest-isort
+           python-pytest-runner
+           python-setuptools
+           python-wheel))
     (home-page "https://cairosvg.org/")
     (synopsis "SVG to PDF/PS/PNG converter based on Cairo")
     (description "CairoSVG is a SVG converter based on Cairo.  It can export
@@ -31714,7 +31745,9 @@ and not test_transcript")))
            python-pytest
            python-pytest-cov
            python-pytest-mock
-           python-setuptools-scm))
+           python-setuptools
+           python-setuptools-scm
+           python-wheel))
     (home-page "https://github.com/python-cmd2/cmd2")
     (synopsis "Tool for building interactive command line applications")
     (description
@@ -33983,7 +34016,7 @@ functions defined in POSIX.1-2001 and POSIX.1-2008.")
                                 "python-pyan3-fix-absolute-path-bug.patch"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-pytest python-pytest-cov python-wheel))
+     (list python-pytest python-pytest-cov python-setuptools python-wheel))
     (propagated-inputs
      (list python-jinja2))
     (home-page "https://github.com/Technologicat/pyan")
@@ -35485,7 +35518,13 @@ writing STL files.  It supports both the text and binary forms of STL.")
                 "0hzshd665rl1bkwvaj9va4j3gs8nmb478fbvligx20663xhmzfzp"))))
     (build-system python-build-system)
     (propagated-inputs (list python-six))
-    (native-inputs (list python-pyyaml python-mock python-pytest-cov))
+    (native-inputs
+     (list python-mock
+           python-pytest
+           python-pytest-cov
+           python-pyyaml
+           python-setuptools
+           python-wheel))
     (arguments
      `(#:phases (modify-phases %standard-phases
                   ;; There is a bug in the test_suit specification.
@@ -35573,6 +35612,7 @@ adapted from the @code{packaging} package.")
             python-pytest
             python-pytest-cov
             python-pytest-timeout
+            python-setuptools
             python-setuptools-scm
             python-wheel))
     (home-page "https://github.com/iterative/shtab")
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index ed029efeac..99c0a121dd 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -577,7 +577,7 @@ some support for generating and analysing traffic scenarios..")
     (inputs
      (list openmpi python-numpy))
     (native-inputs
-     (list python-pytest-cov))
+     (list python-pytest python-setuptools python-wheel))
     (propagated-inputs
      (list python-mpi4py))
     (arguments
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index 5ec3695e85..4be9febb96 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -1158,9 +1158,11 @@ enabled web server.")
     (native-inputs
      (list python-nptyping
            python-pytest
+           python-setuptools
            python-setuptools-scm
            python-sphobjinv
-           python-typing-extensions))
+           python-typing-extensions
+           python-wheel))
     (home-page "https://pypi.org/project/sphinx-autodoc-typehints/")
     (synopsis "Type hints for the Sphinx autodoc extension")
     (description "This extension allows you to use Python 3 annotations for
diff --git a/gnu/packages/syndication.scm b/gnu/packages/syndication.scm
index d986e049cc..bbb89099b0 100644
--- a/gnu/packages/syndication.scm
+++ b/gnu/packages/syndication.scm
@@ -474,7 +474,9 @@ a simple interface that makes it easy to organize and browse feeds.")
            python-mock
            python-pylint
            python-pytest
-           python-vcrpy))
+           python-setuptools
+           python-vcrpy
+           python-wheel))
     (home-page "https://gitlab.com/ajak/tuir")
     (synopsis "Terminal viewer for Reddit (Terminal UI for Reddit)")
     (description
diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm
index 203254490e..8d9157fd94 100644
--- a/gnu/packages/terminals.scm
+++ b/gnu/packages/terminals.scm
@@ -1196,8 +1196,14 @@ per-line fullscreen terminal rendering, and keyboard input event reporting.")
     (build-system pyproject-build-system)
     (propagated-inputs (list python-colorama python-log-symbols python-six
                              python-spinners python-termcolor))
-    (native-inputs (list python-coverage python-nose python-pylint python-tox
-                         python-twine))
+    (native-inputs
+     (list python-coverage
+           python-nose
+           python-pylint
+           python-setuptools
+           python-tox
+           python-twine
+           python-wheel))
     (home-page "https://github.com/manrajgrover/halo")
     (synopsis "Python library to display graphical spinners in the terminal")
     (description "Halo is a Python library to display graphical spinners in
diff --git a/gnu/packages/time.scm b/gnu/packages/time.scm
index 552ac346c4..2b5236279b 100644
--- a/gnu/packages/time.scm
+++ b/gnu/packages/time.scm
@@ -252,7 +252,11 @@ Pendulum instances.")
                      ;; XXX: Fails to get timezone from /etc/localtime.
                      "--ignore=dateutil/test/test_tz.py")))
     (native-inputs
-     (list python-pytest python-pytest-cov python-setuptools-scm))
+     (list python-pytest
+           python-pytest-cov
+           python-setuptools
+           python-setuptools-scm
+           python-wheel))
     (propagated-inputs
      (list python-six))
     (home-page "https://dateutil.readthedocs.io/en/stable/")
@@ -508,13 +512,14 @@ timestamps.")
                           ;; Remove when python-dateutil > 2.8.1.
                           "-k" "not test_parse_tz_name_zzz")))
     (native-inputs
-     (list ;; For testing
-           python-chai
+     (list python-chai
            python-pytest
            python-pytest-cov
            python-pytest-mock
            python-pytz
-           python-simplejson))
+           python-setuptools
+           python-simplejson
+           python-wheel))
     (propagated-inputs
      (list python-dateutil))
     (home-page "https://github.com/arrow-py/arrow")
diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm
index 2567acd2af..c70f1209c4 100644
--- a/gnu/packages/version-control.scm
+++ b/gnu/packages/version-control.scm
@@ -2082,14 +2082,16 @@ visualize your public Git repositories on a web interface.")
                         " and not test_healthy_venv_creator"
                         " and not test_r_hook and not test_r_inline"))))))))
     (native-inputs
-     `(("git" ,git-minimal)
-       ("python-covdefaults" ,python-covdefaults)
-       ("python-coverage" ,python-coverage)
-       ("python-distlib" ,python-distlib)
-       ("python-pytest" ,python-pytest)
-       ("python-pytest-env" ,python-pytest-env)
-       ("python-re-assert" ,python-re-assert)
-       ("which" ,which)))
+     (list git-minimal
+           python-covdefaults
+           python-coverage
+           python-distlib
+           python-pytest
+           python-pytest-env
+           python-re-assert
+           python-setuptools
+           python-wheel
+           which))
     ;; Propagate because pre-commit is also used as a module.
     (propagated-inputs
      (list python-cfgv
diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm
index 5f1148b743..6d28b32c86 100644
--- a/gnu/packages/virtualization.scm
+++ b/gnu/packages/virtualization.scm
@@ -2030,10 +2030,12 @@ mainly implemented in user space.")
                   (format #t "test suite not run~%")))))))
     (native-inputs
      (list python-avocado-framework
-           python-setuptools-scm
            python-flake8
            python-isort
-           python-pylint))
+           python-pylint
+           python-setuptools
+           python-setuptools-scm
+           python-wheel))
     (propagated-inputs
      (list python-pygments
            python-urwid
@@ -2807,7 +2809,12 @@ use with virtualization provisioning tools")
            python-requests
            python-toml))
     (native-inputs
-     (list python-black python-mypy python-pyhamcrest python-twine))
+     (list python-black
+           python-mypy
+           python-pyhamcrest
+           python-setuptools
+           python-twine
+           python-wheel))
     (home-page "https://github.com/ALSchwalm/transient")
     (synopsis "QEMU Wrapper written in Python")
     (description
diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm
index 6c894fc45b..67d8d34c1e 100644
--- a/gnu/packages/xorg.scm
+++ b/gnu/packages/xorg.scm
@@ -109,6 +109,7 @@
   #:use-module (gnu packages perl-check)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages python)
+  #:use-module (gnu packages python-build)
   #:use-module (gnu packages python-compression)
   #:use-module (gnu packages python-crypto)
   #:use-module (gnu packages python-xyz)
@@ -1740,7 +1741,12 @@ generate code for the @code{python-xcbffib} package.")
     (source (package-source xcffibgen))
     (build-system pyproject-build-system)
     (native-inputs
-     (list pkg-config which xcb-proto xcffibgen))
+     (list pkg-config
+           python-setuptools
+           python-wheel
+           which
+           xcb-proto
+           xcffibgen))
     (inputs
      (list libxcb))
     (propagated-inputs