summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2024-05-07 12:19:08 +0200
committerRicardo Wurmus <rekado@elephly.net>2024-05-08 12:53:14 +0200
commit092609b36a10031b671f21de60dbd95c7fb3bcc8 (patch)
tree367103cc6ab84e16ed0a89785671e642f0b2e6df
parentba8fbb89e4b0f23d8491834ebde95e058ebf01c3 (diff)
gnu: Add r-alabaster-ranges.
* gnu/packages/bioconductor.scm (r-alabaster-ranges): New variable. Change-Id: I99e1e6549537acb37de2788961dbd17ef6c1de27
-rw-r--r--gnu/packages/bioconductor.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d6b3e30daf..295f067769 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3264,6 +3264,37 @@ associated with metadata for further interpretation; downstream applications
can enrich this metadata with context-specific properties.")
(license license:expat)))
+(define-public r-alabaster-ranges
+ (package
+ (name "r-alabaster-ranges")
+ (version "1.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "alabaster.ranges" version))
+ (sha256
+ (base32 "0kjafvd4pc3bxnpjz0nvs07sdy65ad0hyzwq0nv7cifbzw9qajay"))))
+ (properties `((upstream-name . "alabaster.ranges")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-alabaster-base
+ r-biocgenerics
+ r-genomeinfodb
+ r-genomicranges
+ r-iranges
+ r-rhdf5
+ r-s4vectors))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/alabaster.ranges")
+ (synopsis "Load and save Ranges-related artifacts from file")
+ (description
+ "This is a package for saving @code{GenomicRanges}, @code{IRanges} and
+related data structures into file artifacts, and loading them back into
+memory. This is a more portable alternative to serialization of such objects
+into RDS files. Each artifact is associated with metadata for further
+interpretation; downstream applications can enrich this metadata with
+context-specific properties.")
+ (license license:expat)))
+
(define-public r-alabaster-schemas
(package
(name "r-alabaster-schemas")