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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-05-07 12:23:38 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-05-08 12:53:14 +0200 |
| commit | cf3471cc9e0b8ead09c2bd8bc3e48f4e5dedbdcd (patch) | |
| tree | 5371f8789e82fb7c9d410ec6d13105fdb69517ad | |
| parent | 155ac301f74f06cdbaeb4158da84a0921b88be65 (diff) | |
gnu: Add r-pwalign.
* gnu/packages/bioconductor.scm (r-pwalign): New variable.
Change-Id: I6a12f48c5de948292af7c6888b12e849e1f42db7
| -rw-r--r-- | gnu/packages/bioconductor.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 3042501268..e74baccc99 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10381,6 +10381,30 @@ batch correction and normalization.") proteomics packages.") (license license:artistic2.0))) +(define-public r-pwalign + (package + (name "r-pwalign") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "pwalign" version)) + (sha256 + (base32 "1m0j1m5jif5spd9fkpzz3z3c9s8vwiy8xvpx8rz8igxj89rwrwb7")))) + (properties `((upstream-name . "pwalign"))) + (build-system r-build-system) + (propagated-inputs (list r-biocgenerics r-biostrings r-iranges r-s4vectors + r-xvector)) + (home-page "https://bioconductor.org/packages/pwalign") + (synopsis "Perform pairwise sequence alignments") + (description + "The two main functions in the package are @code{pairwiseAlignment} and +@code{stringDist}. The former solves (Needleman-Wunsch) global alignment, +(Smith-Waterman) local alignment, and (ends-free) overlap alignment problems. +The latter computes the Levenshtein edit distance or pairwise alignment score +matrix for a set of strings.") + (license license:artistic2.0))) + (define-public r-rbgl (package (name "r-rbgl") |