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| author | Leo Famulari <leo@famulari.name> | 2017-04-25 14:27:03 -0400 |
|---|---|---|
| committer | Leo Famulari <leo@famulari.name> | 2017-04-25 14:27:03 -0400 |
| commit | 39d2d9a7abdde28830c39c1128986cad539c081d (patch) | |
| tree | 980846ee567066b80e259e35bd1f39c388db583c /gnu/packages/bioinformatics.scm | |
| parent | 803067939718be1c17a40fa33a75eb65a3cece2f (diff) | |
| parent | 31c374e0816fc183e177d93257f90b3c02d517af (diff) | |
Merge branch 'master' into staging
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 15 |
1 files changed, 9 insertions, 6 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d270db9b53..46e238f85d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1460,9 +1460,15 @@ multiple sequence alignments.") (setenv "HOME" "/tmp") (and (zero? (system* "make" "-C" "pysam_data")) (zero? (system* "make" "-C" "cbcf_data")) - (zero? (system* "nosetests" "-v" - "--processes" - (number->string (parallel-job-count))))))))))) + ;; Running nosetests without explicitly asking for a + ;; single process leads to a crash. Running with multiple + ;; processes fails because the tests are not designed to + ;; run in parallel. + + ;; FIXME: tests keep timing out on some systems. + ;; (zero? (system* "nosetests" "-v" + ;; "--processes" "1")) + ))))))) (propagated-inputs `(("htslib" ,htslib))) ; Included from installed header files. (inputs @@ -2113,9 +2119,6 @@ translated DNA query sequences against a protein reference database (BLASTP and BLASTX alignment mode). The speedup over BLAST is up to 20,000 on short reads at a typical sensitivity of 90-99% relative to BLAST depending on the data and settings.") - ;; diamond fails to build on other platforms - ;; https://github.com/bbuchfink/diamond/issues/18 - (supported-systems '("x86_64-linux")) (license (license:non-copyleft "file://src/COPYING" "See src/COPYING in the distribution.")))) |