gnu: python-anndata: Move to python-science.

* gnu/packages/python-xyz.scm (python-anndata): Move from here ...
* gnu/packages/python-science.scm: ... to here.

Change-Id: I3d968728de04610984c08884bd29cd9c055fa284

1 files changed, 0 insertions, 80 deletions

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 44b75747f6..4aa8aa2330 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -30070,86 +30070,6 @@ codecs for use in data storage and communication applications.")
 N-dimensional arrays for Python.")
     (license license:expat)))
 
-(define-public python-anndata
-  (package
-    (name "python-anndata")
-    (version "0.11.1")
-    (source
-     (origin
-       ;; The tarball from PyPi doesn't include tests.
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/theislab/anndata")
-             (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32
-         "0skmjjvxk5gdsx6fkplszff92jsb4l45j23c6mhq1vdi3wqhqhcw"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:test-flags
-      #~(list "-k" #$(string-append
-                      ;; This one test seemingly freezes
-                      "not test_read_lazy_h5_cluster"
-                      ;; Fails with a numpy deprecation warning
-                      ;; but not an actual failure
-                      " and not test_read_write_X"))
-      #:phases
-      #~(modify-phases %standard-phases
-          ;; Doctests require scanpy from (gnu packages bioinformatics)
-          (add-after 'unpack 'disable-doctests
-            (lambda _
-              (substitute* "pyproject.toml"
-                (("--doctest-modules") ""))))
-          (add-before 'build 'set-version
-            (lambda _
-              (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)
-              ;; ZIP does not support timestamps before 1980.
-              (setenv "SOURCE_DATE_EPOCH" "315532800")))
-          ;; Numba needs a writable dir to cache functions.
-          (add-before 'check 'set-numba-cache-dir
-            (lambda _
-              (setenv "NUMBA_CACHE_DIR" "/tmp"))))))
-    (propagated-inputs
-     (list python-array-api-compat
-           python-exceptiongroup ;only for Python <3.11
-           python-h5py
-           python-importlib-metadata
-           python-natsort
-           python-numcodecs
-           python-packaging
-           python-pandas
-           python-scipy
-           python-scikit-learn
-           python-setuptools ; For pkg_resources.
-           python-zarr))
-    (native-inputs
-     (list python-awkward
-           python-boltons
-           python-dask
-           python-distributed
-           python-hatchling
-           python-hatch-vcs
-           python-joblib
-           python-loompy
-           python-matplotlib
-           python-pytest
-           python-pytest-mock
-           python-pytest-doctestplus
-           python-pytest-xdist
-           python-toml
-           python-flit
-           python-setuptools-scm))
-    (home-page "https://github.com/theislab/anndata")
-    (synopsis "Annotated data for data analysis pipelines")
-    (description "Anndata is a package for simple (functional) high-level APIs
-for data analysis pipelines.  In this context, it provides an efficient,
-scalable way of keeping track of data together with learned annotations and
-reduces the code overhead typically encountered when using a mostly
-object-oriented library such as @code{scikit-learn}.")
-    (license license:bsd-3)))
-
 (define-public python-dill
   (package
     (name "python-dill")