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| author | Ricardo Wurmus <rekado@elephly.net> | 2025-01-16 22:51:36 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2025-01-20 21:38:01 +0100 |
| commit | 84119015a33d7f4e7c9ca5c9a187b99a1ee41c54 (patch) | |
| tree | a986ad5f7c7677ddf20e88aeb19bdb6d380c7f78 /gnu/packages/python-xyz.scm | |
| parent | 69e8a3f2f2a066db0f95f77bb78920d8ecb3ae1b (diff) | |
gnu: python-pysnptools: Update to 0.5.14.
* gnu/packages/python-xyz.scm (python-pysnptools): Update to 0.5.14.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase.
[propagated-inputs]: Remove python-dill; add python-bed-reader,
python-cloudpickle, and python-more-itertools.
[native-inputs]: Remove python-cython; add python-pytest, python-pytest-cov,
python-pytest-datadir, python-pytest-doctestplus, python-setuptools,
python-sphinx, python-sphinx-rtd-theme, and python-wheel.
Change-Id: I685f819e70ab209198b504c6e41b253dc5a1d876
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 33 |
1 files changed, 17 insertions, 16 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 851e139da6..3b1e90621b 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -10524,35 +10524,36 @@ the results.") (define-public python-pysnptools (package (name "python-pysnptools") - (version "0.4.11") + (version "0.5.14") (source (origin (method url-fetch) (uri (pypi-uri "pysnptools" version)) (sha256 (base32 - "0gxr0bjix307wvk0qh7vkafbxbzfpdmq0wlswpxyyaymy0fwcypv")))) - (build-system python-build-system) - (arguments - `(#:tests? #f ; no test data are included - #:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key inputs outputs tests? #:allow-other-keys) - (if tests? - (begin - (add-installed-pythonpath inputs outputs) - (invoke "python3" "pysnptools/test.py")) - #t)))))) + "1babnyky5fk93as1ybdvpz9x3x5099gkgscxflngzfswin23mspk")))) + (build-system pyproject-build-system) + ;; Tests require test data from python-bed-reader, which fetches data with + ;; python-pooch. + (arguments (list #:tests? #f)) (propagated-inputs - (list python-dill + (list python-bed-reader + python-cloudpickle python-h5py + python-more-itertools python-numpy python-pandas python-psutil python-scipy)) (native-inputs - (list python-cython)) + (list python-pytest + python-pytest-cov + python-pytest-datadir + python-pytest-doctestplus + python-setuptools + python-sphinx + python-sphinx-rtd-theme + python-wheel)) (home-page "http://microsoftgenomics.github.io/PySnpTools/") (synopsis "Library for reading and manipulating genetic data") (description |