Merge branch 'master' into gnome-team

1 files changed, 393 insertions, 145 deletions

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 8bd43cb6d3..f7e3f6f538 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -59,14 +59,14 @@
 ;;; Copyright © 2019, 2020 Brett Gilio <brettg@gnu.org>
 ;;; Copyright © 2019 Sam <smbaines8@gmail.com>
 ;;; Copyright © 2019, 2023 Jack Hill <jackhill@jackhill.us>
-;;; Copyright © 2019, 2020, 2021, 2022 Guillaume Le Vaillant <glv@posteo.net>
+;;; Copyright © 2019-2023, Guillaume Le Vaillant <glv@posteo.net>
 ;;; Copyright © 2019, 2020 Alex Griffin <a@ajgrf.com>
 ;;; Copyright © 2019, 2020, 2021, 2022 Pierre Langlois <pierre.langlois@gmx.com>
 ;;; Copyright © 2019 Jacob MacDonald <jaccarmac@gmail.com>
 ;;; Copyright © 2019, 2020, 2021 Giacomo Leidi <goodoldpaul@autistici.org>
 ;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz>
 ;;; Copyright © 2019, 2020, 2021, 2022 Tanguy Le Carrour <tanguy@bioneland.org>
-;;; Copyright © 2019, 2021, 2022 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
+;;; Copyright © 2019, 2021-2023 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
 ;;; Copyright © 2020 Riku Viitanen <riku.viitanen@protonmail.com>
 ;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
 ;;; Copyright © 2020 sirgazil <sirgazil@zoho.com>
@@ -583,6 +583,26 @@ and variables you'll need already imported and created.
 scipy and numpy of negative binomial maximum likelihood estimation.")
     (license license:gpl3+)))
 
+(define-public python-docrep
+  (package
+    (name "python-docrep")
+    (version "0.3.2")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "docrep" version))
+              (sha256
+               (base32
+                "0523jrzjj29kxpdllmfhrfj9kysi9mphp2m7ippjkn5b07i1g2pd"))))
+    (build-system pyproject-build-system)
+    (propagated-inputs (list python-six))
+    (native-inputs (list python-pytest python-pytest-runner))
+    (home-page "https://github.com/Chilipp/docrep")
+    (synopsis "Python package for docstring repetition")
+    (description "Docrep is the documentation repetition module.  This module
+targets developers that develop complex and nested Python APIs and helps them
+to create a well-documented piece of software.")
+    (license license:asl2.0)))
+
 (define-public python-dotmap
   (package
     (name "python-dotmap")
@@ -621,6 +641,29 @@ remembers the order in which the items were inserted and supports almost all the
 features of the Python's built-in dict.")
     (license license:unlicense)))
 
+(define-public python-adjusttext
+  (package
+    (name "python-adjusttext")
+    (version "0.8")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "adjustText" version))
+              (sha256
+               (base32
+                "05zf0xn7ab40dan213fwbp1z4rybih8dphf9mzb2ddmbafxq41mv"))))
+    (build-system pyproject-build-system)
+    (propagated-inputs (list python-matplotlib python-numpy))
+    (home-page "https://github.com/Phlya/adjustText")
+    (synopsis "Adjust text position in matplotlib plots to minimize overlaps")
+    (description
+     "Often when we want to label multiple points on a graph the text will
+start heavily overlapping with both other labels and data points.  This can be
+a major problem requiring manual solution.  However this can be largely
+automatized by smart placing of the labels (difficult) or iterative adjustment
+of their positions to minimize overlaps (relatively easy).  This library
+implements the latter option to help with matplotlib graphs.")
+    (license license:expat)))
+
 (define-public python-argopt
   (package
    (name "python-argopt")
@@ -1141,6 +1184,67 @@ commits.")
 generator MkDocs.")
     (license license:expat)))
 
+(define-public python-skranger
+  (package
+    (name "python-skranger")
+    (version "0.8.0")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/crflynn/skranger")
+                    (commit version)
+                    (recursive? #true)))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "0njy4xbc98l295k92nyk93njv1348vd1il5pdyrnk8nnzc2anzf0"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:modules '((guix build pyproject-build-system)
+                  (guix build utils)
+                  (ice-9 match))
+      #:test-flags
+      ;; "from sklearn.datasets import load_boston" fails because it has been
+      ;; removed from scikit-learn since version 1.2.
+      '(list "--ignore=tests/conftest.py"
+             "--ignore=tests/test_tools.py"
+             "--ignore=tests/tree/test_regressor.py"
+             "--ignore=tests/ensemble/test_regressor.py")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-tests
+            (lambda _
+              (substitute* "tests/conftest.py"
+                (("from sklearn.datasets import load_boston") "")
+                (("^_boston_X.*") "_boston_X, _boston_Y = (True, True)\n"))))
+          (add-before 'check 'build-extensions
+            (lambda _
+              ;; Cython extensions have to be built before running the tests.
+              (invoke "python" "buildpre.py")
+              (invoke "python" "build.py" "build_ext" "--inplace")
+              (let ((site (string-append #$output "/lib/python"
+                                         #$(version-major+minor
+                                            (package-version python))
+                                         "/site-packages/skranger"))
+                    (lib (match (find-files "build" "\\.so")
+                           ((the-lib) the-lib)
+                           (_ (error "could not find .so")))))
+                (mkdir-p site)
+                (install-file lib site)))))))
+    (propagated-inputs (list python-scikit-learn))
+    (native-inputs
+     (list python-cython
+           python-matplotlib
+           python-pandas
+           python-poetry-core
+           python-pytest))
+    (home-page "https://github.com/crflynn/skranger")
+    (synopsis "Python bindings for C++ ranger random forests")
+    (description "This package provides scikit-learn compatible Python
+bindings to the C++ random forest implementation, ranger, using Cython.")
+    (license license:gpl3+)))
+
 (define-public python-slixmpp
   (package
     (name "python-slixmpp")
@@ -2690,6 +2794,26 @@ a library.")
     (description "DiskCache is a disk and file backed persistent cache.")
     (license license:asl2.0)))
 
+(define-public python-optparse-pretty
+  (package
+    (name "python-optparse-pretty")
+    (version "0.1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "optparse-pretty" version))
+       (sha256
+        (base32 "1920wbh2b7a8qn7zx2iiqbcdaax335l81a73x9pp8h11yzs2jdmh"))))
+    (build-system pyproject-build-system)
+    (arguments (list #:tests? #false))  ;There are none
+    (home-page "https://github.com/gvalkov/optparse-pretty")
+    (synopsis "Compact help formatter for optparse")
+    (description
+     "This module provides two help formatters for optparse.  They provide
+terser and more customizable option formatting in comparison to the default
+help formatter.")
+    (license license:bsd-3)))
+
 (define-public python-orjson
   (package
     (name "python-orjson")
@@ -2703,9 +2827,14 @@ a library.")
     (build-system cargo-build-system)
     (arguments
      (list
+      #:imported-modules `(,@%cargo-build-system-modules
+                           ,@%pyproject-build-system-modules)
+      #:modules '((guix build cargo-build-system)
+                  ((guix build pyproject-build-system) #:prefix py:)
+                  (guix build utils))
       #:phases
       #~(modify-phases %standard-phases
-          (add-after 'install 'build-python-module
+          (add-after 'install 'prepare-python-module
             (lambda _
               ;; We don't use maturin.
               (delete-file "pyproject.toml")
@@ -2719,10 +2848,9 @@ requires = ['setuptools']
               (call-with-output-file "setup.cfg"
                 (lambda (port)
                   (format port "\
-
 [metadata]
 name = orjson
-version = '~a'
+version = ~a
 
 [options]
 packages = find:
@@ -2733,15 +2861,11 @@ exclude =
   integration
   test
   Cargo.toml
-" #$version)))
-              ;; ZIP does not support timestamps before 1980.
-              (setenv "SOURCE_DATE_EPOCH" "315532800")
-              (invoke "python" "-m" "build" "--wheel" "--no-isolation" ".")))
+" #$version)))))
+          (add-after 'prepare-python-module 'build-python-module
+            (assoc-ref py:%standard-phases 'build))
           (add-after 'build-python-module 'install-python-module
-            (lambda* (#:key outputs #:allow-other-keys)
-              (let ((whl (car (find-files "dist" "\\.whl$"))))
-                (invoke "pip" "--no-cache-dir" "--no-input"
-                        "install" "--no-deps" "--prefix" #$output whl))))
+            (assoc-ref py:%standard-phases 'install))
           (add-after 'install-python-module 'install-python-library
             (lambda _
               (let ((site (string-append #$output "/lib/python"
@@ -4870,22 +4994,8 @@ recognition library with full Unicode support.  It has features like:
               (sha256
                (base32
                 "1nh75i72584r70alhqc479gys04s5m5g3vq601yf2njbs7z5jzng"))))
-    (build-system python-build-system)
-    (arguments
-     (list
-      #:tests? #f                       ;pypi source does not contains tests
-      #:phases
-      #~(modify-phases %standard-phases
-          (replace 'build
-            (lambda _ (invoke "flit" "build")))
-          (replace 'install
-            (lambda* (#:key inputs outputs #:allow-other-keys)
-              (add-installed-pythonpath inputs outputs)
-              (for-each
-               (lambda (wheel)
-                 (invoke "python" "-m" "pip" "install"
-                         wheel (string-append "--prefix=" #$output)))
-               (find-files "dist" "\\.whl$")))))))
+    (build-system pyproject-build-system)
+    (arguments (list #:tests? #f))      ;pypi source does not contains tests
     (native-inputs (list python-flit))
     (propagated-inputs
      (list python-mdurl
@@ -9588,6 +9698,37 @@ module with a few extra procedures.")
 releases.")
     (license license:expat)))
 
+(define-public python-jaraco-test
+  (package
+    (name "python-jaraco-test")
+    (version "5.3.0")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "jaraco.test" version))
+              (sha256
+               (base32
+                "0h0x8qmvfkfqvwdx2m7kwhn53sg26k8gkaas7s1730ak772zqrvz"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:phases #~(modify-phases %standard-phases
+                   (replace 'check
+                     (lambda _
+                       (invoke "pytest" "-vv" "-k" "http"))))))
+    (propagated-inputs (list python-jaraco-context python-jaraco-functools))
+    (native-inputs (list python-flake8
+                         python-pytest
+                         python-pytest-black
+                         python-pytest-checkdocs
+                         python-pytest-cov
+                         python-pytest-enabler
+                         python-pytest-flake8
+                         python-pytest-mypy))
+    (home-page "https://github.com/jaraco/jaraco.test")
+    (synopsis "Testing support by jaraco")
+    (description "This package provides testing support by jaraco.")
+    (license license:expat)))
+
 (define-public python-simplegeneric
   (package
     (name "python-simplegeneric")
@@ -11094,27 +11235,7 @@ SVG, EPS, PNG and terminal output.")
               (sha256
                (base32
                 "08vvnp4ps86857imxz2l5xi2vir5xdcdp3apq4badb4b5llifgw9"))))
-    (build-system python-build-system)
-    (arguments
-     (list #:modules '((guix build python-build-system)
-                       (guix build utils)
-                       (ice-9 match))
-           #:phases #~(modify-phases %standard-phases
-                        (replace 'build
-                          (lambda _
-                            (invoke "python" "-m" "build" "--wheel"
-                                    "--no-isolation" ".")))
-                        (replace 'install
-                          (lambda _
-                            (match (find-files "dist" "\\.whl$")
-                              ((wheel _ ...)
-                               (invoke "python" "-m" "pip" "install"
-                                       (string-append "--prefix=" #$output)
-                                       wheel)))))
-                        (replace 'check
-                          (lambda* (#:key tests? #:allow-other-keys)
-                            (when tests?
-                              (invoke "pytest" "-vv")))))))
+    (build-system pyproject-build-system)
     (propagated-inputs (list python-pandas python-matplotlib python-numpy
                              python-scipy))
     (native-inputs (list python-flit-core python-pypa-build python-pytest))
@@ -11127,7 +11248,6 @@ with the PyData stack, including support for numpy and pandas data structures
 and statistical routines from scipy and statsmodels.")
     (license license:bsd-3)))
 
-
 (define-public python-session-info
   (package
     (name "python-session-info")
@@ -11716,7 +11836,37 @@ you do not want to store entirely on disk or on memory.")
                         " and not test_httplib_misuse"
                         ;; Fails with IndexError.
                         " and not test_session_mode_defaults_to"
-                        "_request_mode_in_wsgi_handler"))))))))
+                        "_request_mode_in_wsgi_handler"
+                        ;; Tests below fail with pytest 7
+                        " and not test_leaks"
+                        " and not test_basic"
+                        " and not test_keyboard_interrupt_is_captured"
+                        " and not test_transaction_with_error"
+                        " and not test_transaction_no_error"
+                        " and not test_start_span_to_start_transaction"
+                        " and not test_tracestate_computation"
+                        " and not test_doesnt_add_new_tracestate_to_transaction_when_none_given"
+                        " and not test_adds_tracestate_to_transaction_when_to_traceparent_called"
+                        " and not test_adds_tracestate_to_transaction_when_getting_trace_context"
+                        " and not test_tracestate_is_immutable_once_set"
+                        " and not test_to_traceparent"
+                        " and not test_to_tracestate"
+                        " and not test_sentrytrace_extraction"
+                        " and not test_tracestate_extraction"
+                        " and not test_iter_headers"
+                        " and not test_tracestate_reinflation"
+                        " and not test_continue_from_headers"
+                        " and not test_memory_usage"
+                        " and not test_transactions_do_not_go_through_before_send"
+                        " and not test_start_span_after_finish"
+                        " and not test_span_trimming"
+                        " and not test_transaction_naming"
+                        " and not test_start_transaction"
+                        " and not test_finds_transaction_on_scope"
+                        " and not test_finds_transaction_when_descendent_span_is_on_scope"
+                        " and not test_finds_orphan_span_on_scope"
+                        " and not test_finds_non_orphan_span_on_scope"
+                        " and not test_circular_references"))))))))
     (native-inputs
      (list python-django
            python-executing
@@ -11809,31 +11959,7 @@ plugin for flake8 to check PEP-8 naming conventions.")
        (sha256
         (base32
          "00zahgw9zjfqwf0218bj5k732aibnn68cq1p8f0wmbirb7fy5k31"))))
-    (build-system python-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          ;; XXX: PEP 517 manual build/install procedures copied from
-          ;; python-isort.
-          (replace 'build
-            (lambda _
-              ;; ZIP does not support timestamps before 1980.
-              (setenv "SOURCE_DATE_EPOCH" "315532800")
-              (invoke "python" "-m" "build" "--wheel" "--no-isolation" ".")))
-          (replace 'check
-            (lambda* (#:key tests? inputs outputs #:allow-other-keys)
-              (when tests?
-                (invoke "pytest" "-vv"
-                        ;; Two parameterized test_load tests are currently
-                        ;; failing (see:
-                        ;; https://github.com/FFY00/python-pep621/issues/14).
-                        "-k" "not test_load"))))
-          (replace 'install
-            (lambda* (#:key outputs #:allow-other-keys)
-              (let ((whl (car (find-files "dist" "\\.whl$"))))
-                (invoke "pip" "--no-cache-dir" "--no-input"
-                        "install" "--no-deps" "--prefix" #$output whl)))))))
+    (build-system pyproject-build-system)
     (propagated-inputs (list python-packaging))
     (native-inputs (list python-pypa-build python-pytest python-tomli))
     (home-page "https://github.com/FFY00/python-pyproject-metadata")
@@ -16860,13 +16986,13 @@ ISO 8859, etc.).")
 (define-public python-anyqt
   (package
     (name "python-anyqt")
-    (version "0.0.13")
+    (version "0.2.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "AnyQt" version))
        (sha256
-        (base32 "0z7myf0mp1qx4gza6ncqyq9whk67vblmh9n3klk19dv4aakjml2f"))))
+        (base32 "0fvnhdk0nzhlm1xydisvdq1w7lwaakdkbwb1rkyz4vd232wji4jb"))))
     (build-system python-build-system)
     (arguments
      `(#:tests? #f ;there are no tests
@@ -17254,6 +17380,36 @@ can also be used to get the exact location, font or color of the text.")
 is made as zipfile like as possible.")
     (license license:isc)))
 
+(define-public python-slugid
+  (package
+    (name "python-slugid")
+    (version "2.0.0")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+              (url "https://github.com/taskcluster/slugid.py")
+              (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "1h64p2jlqv6lsmw8h2j203kx3bhv72cwzpk5gdhsaamw30cp3h1i"))))
+    (build-system python-build-system)
+    (native-inputs (list python-nose))
+    (arguments
+      (list #:phases
+        #~(modify-phases %standard-phases
+            (replace 'check
+              (lambda* (#:key inputs tests? #:allow-other-keys)
+                (when tests?
+                  ;; The project uses tox to run the tests via nose.
+                  (invoke "nosetests" "-v" "test.py")))))))
+    (home-page "http://taskcluster.github.io/slugid.py")
+    (synopsis "Module for Base64 encoded UUID v4 slugs")
+    (description "This package provides a module for generating v4
+UUIDs and encoding them into 22 character URL-safe base64 slug
+representation.")
+    (license license:mpl2.0)))
+
 (define-public python-rich
   (package
     (name "python-rich")
@@ -18131,6 +18287,65 @@ specified in POSIX.1-2001 and POSIX.1-2008.")
 objects, patterned after the Mocha library for Ruby.")
     (license license:bsd-3)))
 
+(define-public python-inflect
+  (package
+    (name "python-inflect")
+    (version "6.0.4")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "inflect" version))
+              (sha256
+               (base32
+                "1sqj4svg2vbn4vq332nxnvky2433rgxbvjd529lddjmn2yd68hhq"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      '(list "--ignore=_custom_build/backend.py"
+             "-k" "not mypy-status")
+      #:phases
+      '(modify-phases %standard-phases
+         ;; The build system insists on ignoring the existing environment and
+         ;; running "pip install".
+         (add-after 'unpack 'do-not-use-pip-install
+           (lambda _
+             (substitute* "pyproject.toml"
+               (("^build-backend.*") "\
+build-backend = \"backend\"
+backend_path = [\"_custom_build\"]\n")
+               (("requires = .*") "requires = []\n"))
+             (mkdir-p "_custom_build")
+             (with-output-to-file "_custom_build/backend.py"
+               (lambda _
+                 (display "\
+from setuptools import build_meta as _orig
+from setuptools.build_meta import *
+def get_requires_for_build_wheel(config_settings=None):
+    return []
+def get_requires_for_build_sdist(config_settings=None):
+    return []
+")))
+             (setenv "PYTHONPATH"
+                     (string-append (getcwd) "/_custom_build")))))))
+    (propagated-inputs (list python-pydantic))
+    (native-inputs (list python-flake8
+                         python-pygments
+                         python-pytest
+                         python-pytest-black
+                         python-pytest-checkdocs
+                         python-pytest-cov
+                         python-pytest-enabler
+                         python-pytest-flake8
+                         python-pytest-mypy
+                         ;; For the version number
+                         python-setuptools-scm))
+    (home-page "https://github.com/jaraco/inflect")
+    (synopsis "Correctly generate plurals, singular nouns, ordinals, indefinite articles")
+    (description
+     "This Python module lets you correctly generate plurals, singular nouns,
+ordinals, indefinite articles; it also can convert numbers to words.")
+    (license license:expat)))
+
 (define-public python-inflection
   (package
     (name "python-inflection")
@@ -22049,14 +22264,14 @@ functionality like full case-folding for case-insensitive matches in Unicode.")
 (define-public python-pyopengl
   (package
     (name "python-pyopengl")
-    (version "3.1.5")
+    (version "3.1.6")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "PyOpenGL" version))
        (sha256
         (base32
-         "091lp9bpqi8yf1nmyg19xmvw611lrzq2q94cl1k5gnlh0c6vl1s1"))))
+         "09syrsfrcknr1k2wmj05gfd5d0dyjfxzbipzbd0agv9775vwi9lf"))))
     (build-system python-build-system)
     (inputs
      (list mesa freeglut glu))
@@ -22094,14 +22309,14 @@ library.")
   (package
     (inherit python-pyopengl)
     (name "python-pyopengl-accelerate")
-    (version "3.1.5")
+    (version "3.1.6")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "PyOpenGL-accelerate" version))
        (sha256
         (base32
-         "01iggy5jwxv7lxnj51zbmlbhag9wcb7dvrbwgi97i90n0a5m3r8j"))))
+         "1hydrpdn4p4z6mlczcg1y4s0z8si3rs6zq8x4ql558pcaq1312md"))))
     (inputs
      (list mesa python-numpy)) ; for cython module
                                         ; numpy_formathandler, thus not propagated
@@ -22727,19 +22942,27 @@ queue.")
 (define-public python-zict
   (package
     (name "python-zict")
-    (version "2.0.0")
+    (version "3.0.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "zict" version))
        (sha256
         (base32
-         "05pd1hyhqvpw87rnbvl3vdyf619snpyccbswaxisdj17frwnjacf"))))
-    (build-system python-build-system)
+         "19gvr41xi5fazkzkg33kwrk70sv50hygng0cg70ayym9nriy48g3"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      ;; This uses "importorskip", but it won't skip.
+      '(list "--ignore=tests/test_lmdb.py")))
     (propagated-inputs
      (list python-heapdict))
     (native-inputs
-     (list python-pytest))
+     (list python-pytest
+           python-pytest-asyncio
+           python-pytest-repeat
+           python-pytest-timeout))
     (home-page "https://zict.readthedocs.io/en/latest/")
     (synopsis "Composable mutable mapping tools")
     (description "This package provides abstract @code{MutableMapping} classes
@@ -22806,13 +23029,13 @@ user's @file{~/Trash} directory.")
 (define-public python-yamllint
   (package
     (name "python-yamllint")
-    (version "1.26.1")
+    (version "1.31.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "yamllint" version))
        (sha256
-        (base32 "090krlxj7az0d9yl8i20vjrqi66dfxx7y5xakjhxzsfp7qmldnc7"))))
+        (base32 "0rbs7xq7y7bp3k75z7jamrdrrfyp95hifsz0hwm1cgkk5z8z30rd"))))
     (build-system python-build-system)
     (propagated-inputs
      (list python-pathspec python-pyyaml python-setuptools))
@@ -24787,16 +25010,38 @@ append on old values.  Partd excels at shuffling operations.")
 (define-public python-fsspec
   (package
     (name "python-fsspec")
-    (version "2022.5.0")
+    (version "2023.5.0")
     (source
      (origin
-       (method url-fetch)
-       (uri (pypi-uri "fsspec" version))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/fsspec/filesystem_spec")
+             (commit version)))
+       (file-name (git-file-name name version))
        (sha256
         (base32
-         "1d43qiz8g395042a52yswz6j7q41gvrv3k53wvxn1rs4bk3mjm3s"))))
-    (build-system python-build-system)
-    (arguments '(#:tests? #f))          ; there are none
+         "0c0brw5s4330rj0yjcrqi56hanvaahn43854jai70qzqg1qvyl88"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-version
+            (lambda _
+              (substitute* "fsspec/__init__.py"
+                (("__version__ = .*")
+                 (string-append "__version__ = \"" #$version "\"")))
+              (substitute* "setup.py"
+                (("versioneer.get_version\\(\\)")
+                 (string-append "\"" #$version "\""))))))
+      #:test-flags
+      '(list
+        ;; requires internet access
+        "--ignore=fsspec/implementations/tests/test_dbfs.py")))
+    (propagated-inputs
+     (list python-aiohttp python-libarchive-c python-requests python-tqdm))
+    (native-inputs
+     (list python-pytest python-pytest-mock python-numpy))
     (home-page "https://github.com/intake/filesystem_spec")
     (synopsis "File-system specification")
     (description "The purpose of this package is to produce a template or
@@ -24810,29 +25055,61 @@ decisions with any given backend.")
 (define-public python-dask
   (package
     (name "python-dask")
-    (version "2022.05.2")
+    (version "2023.4.1")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/dask/dask/")
-             (commit "8db1597c9745543df3129399bead5fbc95a54571")))
+             (commit "a69a808f75a961504a9ba18058bff5e458be97fb")))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1xfk3wml972z502w5ii5mn03ls3rg5p4hqgl0hkicgpmzlyz9kph"))
-       (snippet
-        ;; Delete generated copy of python-versioneer.  We recreate it below.
-        '(delete-file "versioneer.py"))))
-    (build-system python-build-system)
+        (base32 "089kz6hcgl4yxwx99br1124sg1gkdy554hf120z9a5cfbrf0ah9y"))))
+    (build-system pyproject-build-system)
     (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'versioneer
-           (lambda _
-             (invoke "versioneer" "install")))
-         (replace 'check
-           (lambda* (#:key tests? #:allow-other-keys)
-             (when tests? (invoke "pytest" "-vv")))))))
+     (list
+      ;; Avoid coverage
+      #:test-flags
+      #~(list "-m" "not gpu and not slow and not network"
+              "-k" (string-append
+                    ;; This one cannot be interrupted.
+                    "not test_interrupt"
+                    ;; This one expects a deprecation warning that never
+                    ;; comes.
+                    " and not test_RandomState_only_funcs")
+              ;; Tests must run from the output directory, because otherwise
+              ;; it complains about the difference between the target
+              ;; directory embedded in the pyc files and the source directory
+              ;; from which we run tests.
+              (getcwd))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'versioneer
+            (lambda _
+              ;; Our version of versioneer needs setup.cfg.  This is adapted
+              ;; from pyproject.toml.
+              (with-output-to-file "setup.cfg"
+                (lambda ()
+                  (display "\
+[versioneer]
+VCS = git
+style = pep440
+versionfile_source = dask/_version.py
+versionfile_build = dask/_version.py
+tag_prefix =
+parentdir_prefix = dask-
+")))
+              (invoke "versioneer" "install")
+              (substitute* "setup.py"
+                (("versioneer.get_version\\(\\)")
+                 (string-append "\"" #$version "\"")))))
+          (add-after 'unpack 'fix-pytest-config
+            (lambda _
+              ;; This option is not supported by our version of pytest.
+              (substitute* "pyproject.toml"
+                (("--cov-config=pyproject.toml") ""))))
+          (add-before 'check 'pre-check
+            (lambda _ (chdir "/tmp"))))))
     (propagated-inputs
      (list python-cloudpickle
            python-fsspec
@@ -24843,7 +25120,9 @@ decisions with any given backend.")
            python-toolz
            python-pyyaml))
     (native-inputs
-     (list python-pytest python-pytest-runner python-pytest-rerunfailures
+     (list python-click
+           python-importlib-metadata
+           python-pytest python-pytest-runner python-pytest-rerunfailures
            python-versioneer))
     (home-page "https://github.com/dask/dask/")
     (synopsis "Parallel computing with task scheduling")
@@ -27270,7 +27549,7 @@ information for your operating system.")
        (uri (pypi-uri "canonicaljson" version))
        (sha256
         (base32 "0j5lq191jkd483q6xzc16c9fahxf15lrv03mvah9ka3lq85pcnfa"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
     (arguments
      (list
       #:phases
@@ -27279,21 +27558,7 @@ information for your operating system.")
            (lambda _
              ;; Permit newer versions of setuptools_scm
              (substitute* "pyproject.toml"
-               ((">= 2.0.0, <3") ">= 2.0.0"))))
-          (replace 'build
-            (lambda _
-              ;; ZIP does not support timestamps before 1980.
-              (setenv "SOURCE_DATE_EPOCH" "315532800")
-              (invoke "python" "-m" "build" "--wheel" "--no-isolation" ".")))
-          (replace 'check
-            (lambda* (#:key tests? #:allow-other-keys)
-              (when tests?
-                (invoke "pytest"))))
-          (replace 'install
-            (lambda _
-              (let ((whl (car (find-files "dist" "\\.whl$"))))
-                (invoke "pip" "--no-cache-dir" "--no-input"
-                        "install" "--no-deps" "--prefix" #$output whl)))))))
+               ((">= 2.0.0, <3") ">= 2.0.0")))))))
     (native-inputs
      (list python-pypa-build python-pytest python-setuptools python-setuptools-scm))
     (propagated-inputs
@@ -32614,24 +32879,7 @@ Storage}.")
               (sha256
                (base32
                 "1f3qrygj16y767q2c7pn9j6m95ggcmj9s5cx9v92ygygly4mr3jp"))))
-    (build-system python-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (replace 'check
-            (lambda* (#:key tests? #:allow-other-keys)
-              (when tests?
-                (invoke "pytest" "-v" "tests"))))
-          ;; XXX: PEP 517 manual build copied from python-isort.
-          (replace 'build
-            (lambda _
-              (invoke "python" "-m" "build" "--wheel" "--no-isolation" ".")))
-          (replace 'install
-            (lambda _
-              (let ((whl (car (find-files "dist" "\\.whl$"))))
-                (invoke "pip" "--no-cache-dir" "--no-input"
-                        "install" "--no-deps" "--prefix" #$output whl)))))))
+    (build-system pyproject-build-system)
     (native-inputs
      (list python-click
            python-poetry-core