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| -rw-r--r-- | gnu/packages/bioconductor.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index d93c12e2a6..b5465cfca4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -12168,6 +12168,38 @@ the available RAM.") HDF5 datasets.") (license license:bsd-2))) +(define-public r-rnaagecalc + (package + (name "r-rnaagecalc") + (version "1.18.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "RNAAgeCalc" version)) + (sha256 + (base32 "1f4vvx56jfs3ag0z1d815ysg54ff5p5l13cqq2gl9xfq2glqv6qn")))) + (properties `((upstream-name . "RNAAgeCalc"))) + (build-system r-build-system) + (propagated-inputs (list r-annotationdbi + r-ggplot2 + r-impute + r-org-hs-eg-db + r-recount + r-summarizedexperiment)) + (native-inputs (list r-knitr r-testthat)) + (home-page "https://github.com/reese3928/RNAAgeCalc") + (synopsis "Multi-tissue transcriptional age calculator") + (description + "It has been shown that both DNA methylation and RNA transcription are +linked to chronological age and age related diseases. Several estimators have +been developed to predict human aging from DNA level and RNA level. Most of +the human transcriptional age predictor are based on microarray data and +limited to only a few tissues. To date, transcriptional studies on aging +using RNASeq data from different human tissues is limited. The aim of this +package is to provide a tool for across-tissue and tissue-specific +transcriptional age calculation based on GTEx RNASeq data.") + (license license:gpl2))) + (define-public r-rsamtools (package (name "r-rsamtools") |