diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 15 |
1 files changed, 11 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 3cadefd2f8..74c95a6f39 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2796,16 +2796,18 @@ parsing of Variant Call Format (VCF) files.") (define-public python-decoupler-py (package (name "python-decoupler-py") - (version "1.6.0") + ;; Upstream places release on a new branch, see + ;; <https://github.com/saezlab/decoupler-py/issues/175>. + (version "1.8.0") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/saezlab/decoupler-py") - (commit (string-append "v" version)))) + (commit version))) (file-name (git-file-name name version)) (sha256 (base32 - "1mqkp0i8k5hzhfnka4nc2f0phmrs0k404ynbl1lqfjzywx25y75h")))) + "0c3yg7jjb1nxb6hsh9wn7wr8w0ba55gixdbf5fp443nhv1cwlajj")))) (build-system pyproject-build-system) (arguments (list @@ -2821,6 +2823,11 @@ parsing of Variant Call Format (VCF) files.") " and not test_get_collectri")) #:phases '(modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "pyproject.toml" + ;; numba = "^0.60.0"; all tests passed. + (("0.60.0") "0.61.0")))) (add-before 'check 'set-home ;; Some tests require a home directory to be set. (lambda _ (setenv "HOME" "/tmp"))) @@ -2842,7 +2849,7 @@ parsing of Variant Call Format (VCF) files.") python-skranger python-tqdm python-typing-extensions)) - (native-inputs (list python-pytest python-wheel)) + (native-inputs (list python-poetry-core python-pytest)) (home-page "https://github.com/saezlab/decoupler-py") (synopsis "Framework for modeling, analyzing and interpreting single-cell RNA-seq data") |