diff options
| -rw-r--r-- | gnu/packages/astronomy.scm | 494 |
1 files changed, 247 insertions, 247 deletions
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 497c75f974..c99ad69c26 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -2126,6 +2126,38 @@ support for reading and writing various compression algorithms including: @url{http://facebook.github.io/zstd/,Zstandard}.") (license license:bsd-3)))) +(define-public python-asdf-coordinates-schemas + (hidden-package + (package + (name "python-asdf-coordinates-schemas") + (version "0.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "asdf_coordinates_schemas" version)) + (sha256 + (base32 "1i5w1v74b84ygbd9pw9cs35bjaqs35f5iavazhjpbycqr1pf8rvh")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + #~(list "--numprocesses" (number->string (parallel-job-count))))) + (native-inputs + (list python-pytest + python-pytest-xdist + python-setuptools-next + python-setuptools-scm + python-wheel)) + (propagated-inputs + (list python-asdf)) + (home-page "https://github.com/asdf-format/asdf-coordinates-schemas") + (synopsis "ASDF coordinates schemas") + (description + "This package provides ASDF schemas for validating coordinates tags. +Users should not need to install this directly; instead, install an +implementation package such as asdf-astropy.") + (license license:bsd-3)))) + (define-public python-asdf-standard (package (name "python-asdf-standard") @@ -5815,6 +5847,96 @@ binned galaxy positions or shear) in cylindrical projection, but its core functionality is more general.") (license license:bsd-3))) +;; XXX: The project is archived, maintained fork is available see +;; <https://github.com/poliastro/poliastro/issues/1640>. +;; Maintained fork <https://github.com/pleiszenburg/hapsira>. +(define-public python-poliastro + (package + (name "python-poliastro") + (version "0.17.0") + (source + (origin + ;; PyPi tarball lacks tests. + (method git-fetch) + (uri (git-reference + (url "https://github.com/poliastro/poliastro") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1iclyjp0cvm6hp5qf4fzklszxvhj3idkxgb6a9h7xzg9bf5j5gi2")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + #~(list "-m" "not remote_data" + ;; TODO: Review failing tests later when any upstream + ;; suggestions are provided: + ;; https://github.com/poliastro/poliastro/issues/1618 + "--ignore=tests/test_czml.py" + "-k" (string-append + ;; This fails with "ufunc 'isfinite' not + ;; supported for the input types" + "not test_porkchop_plotting" + " and not test_maneuver_constructor_raises_error_if_invalid_delta_v")) + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "pyproject.toml" + (("5.0,<6") "5.0,<7")))) + (add-after 'unpack 'matplotlib-compatibility + (lambda _ + (substitute* "src/poliastro/plotting/static.py" + (("import numpy as np.*" m) + (string-append m "\ +import itertools\n")) + (("( +)self._ax = ax.*" m indent) + (string-append m indent + "\ +self.colors = itertools.cycle(plt.rcParams[\"axes.prop_cycle\"].by_key()[\"color\"])\n")) + (("color = next\\(self._ax._get_lines.prop_cycler\\)\\[\"color\"\\]") + "color = next(self.colors)")))) + ;; NOTE: Tests take about 7-10 minutes to pass. + (add-before 'check 'prepare-test-environment + (lambda _ + (setenv "HOME" "/tmp")))))) + (native-inputs + (list python-coverage + python-hypothesis + python-mypy + python-flit-core + python-pytest + python-pytest-cov + python-pytest-doctestplus + python-pytest-mpl + python-pytest-mypy)) + (propagated-inputs + (list python-astropy-6 + python-astroquery + python-czml3 + python-jplephem + python-matplotlib + python-numba + python-numpy + python-pandas + python-plotly + python-pyerfa + python-scipy)) + (home-page "https://www.poliastro.space/") + (synopsis "Astrodynamics in Python") + (description + "POLIASTRO is a Python library for interactive Astrodynamics and Orbital +Mechanics, with a focus on ease of use, speed, and quick visualization. It +provides a simple and intuitive API, and handles physical quantities with +units. + +Some features include orbit propagation, solution of the Lambert's problem, +conversion between position and velocity vectors and classical orbital +elements and orbit plotting, among others. It focuses on interplanetary +applications, but can also be used to analyze artificial satellites in +Low-Earth Orbit (LEO).") + (license license:expat))) + (define-public python-poppy (package (name "python-poppy") @@ -6095,6 +6217,94 @@ also transltes halo properties (mass, concentration, redshift, etc) into angular units for lensing computations with lenstronomy.") (license license:expat))) +(define-public python-pynbody + (package + (name "python-pynbody") + (version "1.6.0.post0") + (source + (origin + (method git-fetch) ;PyPi doesn't have not prebuit version. + (uri (git-reference + (url "https://github.com/pynbody/pynbody") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0rl9ais4yc6kdijq1il4vi3mplp7z6bcih4x55axhan5n3n7riwi")) + (modules '((guix build utils))) + (snippet + ;; Symlink goes to not existing directory. + #~(for-each delete-file '("docs/testdata" + "docs/tutorials/example_code/testdata"))))) + (build-system pyproject-build-system) + (arguments + (list #:test-flags #~(list + ;; Disable tests which need to download additional + ;; 1.0GiB+ of test data archive from + ;; http://star.ucl.ac.uk/~app/testdata.tar.gz + ;; https://github.com/pynbody/pynbody/blob/ \ + ;; f4bd482dc47532831b3ec115c7cb07149d61bfc5/ \ + ;; .github/workflows/build-test.yaml#L41 + ;; See <https://github.com/pynbody/pynbody/issues/778> + "--ignore=tests/copy_on_access_test.py" + "--ignore=tests/gravity_test.py" + "--ignore=tests/adaptahop_test.py" + "--ignore=tests/ahf_halos_test.py" + "--ignore=tests/array_test.py" + "--ignore=tests/bridge_test.py" + "--ignore=tests/family_test.py" + "--ignore=tests/partial_tipsy_test.py" + "--ignore=tests/snapshot_test.py" + "--ignore=tests/test_profile.py" + "--ignore=tests/gadget_test.py" + "--ignore=tests/gadgethdf_test.py" + "--ignore=tests/grafic_test.py" + "--ignore=tests/halotools_test.py" + "--ignore=tests/nchilada_test.py" + "--ignore=tests/ramses_new_ptcl_format_test.py" + "--ignore=tests/ramses_test.py" + "--ignore=tests/rockstar_test.py" + "--ignore=tests/sph_image_test.py" + "--ignore=tests/sph_smooth_test.py" + "--ignore=tests/subfind_test.py" + "--ignore=tests/subfindhdf_gadget4_test.py" + "--ignore=tests/tipsy_test.py" + "-k" + (string-append + "not test_div_curl_smoothing" + " and not test_float_kd" + " and not test_kd_delete" + " and not test_kd_issue_88" + " and not test_kdtree_from_existing_kdtree" + " and not test_kdtree_shared_mem" + " and not test_neighbour_list" + " and not test_particles_in_sphere" + " and not test_periodic_smoothing" + " and not test_smooth" + " and not test_smooth_WendlandC2")) + #:phases + #~(modify-phases %standard-phases + (add-before 'build 'set-compiler + (lambda _ + (setenv "CC" #$(cc-for-target))))))) + (native-inputs + (list python-cython + python-pandas + python-pytest + python-setuptools + python-wheel)) + (propagated-inputs + (list python-h5py + python-matplotlib + python-numpy + python-posix-ipc + python-scipy)) + (home-page "https://pynbody.github.io/pynbody/index.html") + (synopsis "Light-weight astronomical N-body/SPH analysis for python") + (description "@code{Pynbody} is an analysis framework for N-body and hydrodynamic +astrophysical simulations supporting PKDGRAV/Gasoline, Gadget, Gadget4/Arepo, +N-Chilada and RAMSES AMR outputs.") + (license license:gpl3+))) + (define-public python-pyregion (package (name "python-pyregion") @@ -6497,6 +6707,43 @@ format, which are used by ASDF to serialize and deserialize data for the Nancy Grace Roman Space Telescope.") (license license:bsd-3))) +(define-public python-radio-beam + (package + (name "python-radio-beam") + (version "0.3.9") + (source + (origin + (method url-fetch) + (uri (pypi-uri "radio_beam" version)) + (sha256 + (base32 "0i76hj6wyijbpxx7n1sm12f0qqw15srk6ikq2cr589lvrixylpwv")))) + (build-system pyproject-build-system) + (native-inputs + (list python-pytest-astropy + python-setuptools + python-setuptools-scm + python-wheel)) + (propagated-inputs + (list python-astropy + python-matplotlib + python-numpy + python-scipy)) + (home-page "https://radio-beam.readthedocs.io/en/latest/") + (synopsis "Operations for radio astronomy beams with Astropy") + (description + "Radio Beam is a simple toolkit for reading beam information from FITS +headers and manipulating beams. +Some example applications include: +@itemize +@item Convolution and deconvolution +@item Unit conversion (Jy to/from K) +@item Handle sets of beams for spectral cubes with varying resolution between +channels +@item Find the smallest common beam from a set of beams +@item Add the beam shape to a matplotlib plot +@end itemize") + (license license:bsd-3))) + (define-public python-radiospectra (package (name "python-radiospectra") @@ -7314,96 +7561,6 @@ instruments.") (license (list license:bsd-3 ; licenses/LICENSE.rst, same as python-astropy license:expat)))) ; licenses/KOSMOS_LICENSE -;; XXX: The project is archived, maintained fork is available see -;; <https://github.com/poliastro/poliastro/issues/1640>. -;; Maintained fork <https://github.com/pleiszenburg/hapsira>. -(define-public python-poliastro - (package - (name "python-poliastro") - (version "0.17.0") - (source - (origin - ;; PyPi tarball lacks tests. - (method git-fetch) - (uri (git-reference - (url "https://github.com/poliastro/poliastro") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "1iclyjp0cvm6hp5qf4fzklszxvhj3idkxgb6a9h7xzg9bf5j5gi2")))) - (build-system pyproject-build-system) - (arguments - (list - #:test-flags - #~(list "-m" "not remote_data" - ;; TODO: Review failing tests later when any upstream - ;; suggestions are provided: - ;; https://github.com/poliastro/poliastro/issues/1618 - "--ignore=tests/test_czml.py" - "-k" (string-append - ;; This fails with "ufunc 'isfinite' not - ;; supported for the input types" - "not test_porkchop_plotting" - " and not test_maneuver_constructor_raises_error_if_invalid_delta_v")) - #:phases - #~(modify-phases %standard-phases - (add-after 'unpack 'relax-requirements - (lambda _ - (substitute* "pyproject.toml" - (("5.0,<6") "5.0,<7")))) - (add-after 'unpack 'matplotlib-compatibility - (lambda _ - (substitute* "src/poliastro/plotting/static.py" - (("import numpy as np.*" m) - (string-append m "\ -import itertools\n")) - (("( +)self._ax = ax.*" m indent) - (string-append m indent - "\ -self.colors = itertools.cycle(plt.rcParams[\"axes.prop_cycle\"].by_key()[\"color\"])\n")) - (("color = next\\(self._ax._get_lines.prop_cycler\\)\\[\"color\"\\]") - "color = next(self.colors)")))) - ;; NOTE: Tests take about 7-10 minutes to pass. - (add-before 'check 'prepare-test-environment - (lambda _ - (setenv "HOME" "/tmp")))))) - (native-inputs - (list python-coverage - python-hypothesis - python-mypy - python-flit-core - python-pytest - python-pytest-cov - python-pytest-doctestplus - python-pytest-mpl - python-pytest-mypy)) - (propagated-inputs - (list python-astropy-6 - python-astroquery - python-czml3 - python-jplephem - python-matplotlib - python-numba - python-numpy - python-pandas - python-plotly - python-pyerfa - python-scipy)) - (home-page "https://www.poliastro.space/") - (synopsis "Astrodynamics in Python") - (description - "POLIASTRO is a Python library for interactive Astrodynamics and Orbital -Mechanics, with a focus on ease of use, speed, and quick visualization. It -provides a simple and intuitive API, and handles physical quantities with -units. - -Some features include orbit propagation, solution of the Lambert's problem, -conversion between position and velocity vectors and classical orbital -elements and orbit plotting, among others. It focuses on interplanetary -applications, but can also be used to analyze artificial satellites in -Low-Earth Orbit (LEO).") - (license license:expat))) - (define-public python-pyavm (package (name "python-pyavm") @@ -8023,94 +8180,6 @@ science instruments plus the fine guidance sensor, including both direct imaging, coronagraphic, and spectroscopic modes.") (license license:bsd-3))) -(define-public python-pynbody - (package - (name "python-pynbody") - (version "1.6.0.post0") - (source - (origin - (method git-fetch) ;PyPi doesn't have not prebuit version. - (uri (git-reference - (url "https://github.com/pynbody/pynbody") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0rl9ais4yc6kdijq1il4vi3mplp7z6bcih4x55axhan5n3n7riwi")) - (modules '((guix build utils))) - (snippet - ;; Symlink goes to not existing directory. - #~(for-each delete-file '("docs/testdata" - "docs/tutorials/example_code/testdata"))))) - (build-system pyproject-build-system) - (arguments - (list #:test-flags #~(list - ;; Disable tests which need to download additional - ;; 1.0GiB+ of test data archive from - ;; http://star.ucl.ac.uk/~app/testdata.tar.gz - ;; https://github.com/pynbody/pynbody/blob/ \ - ;; f4bd482dc47532831b3ec115c7cb07149d61bfc5/ \ - ;; .github/workflows/build-test.yaml#L41 - ;; See <https://github.com/pynbody/pynbody/issues/778> - "--ignore=tests/copy_on_access_test.py" - "--ignore=tests/gravity_test.py" - "--ignore=tests/adaptahop_test.py" - "--ignore=tests/ahf_halos_test.py" - "--ignore=tests/array_test.py" - "--ignore=tests/bridge_test.py" - "--ignore=tests/family_test.py" - "--ignore=tests/partial_tipsy_test.py" - "--ignore=tests/snapshot_test.py" - "--ignore=tests/test_profile.py" - "--ignore=tests/gadget_test.py" - "--ignore=tests/gadgethdf_test.py" - "--ignore=tests/grafic_test.py" - "--ignore=tests/halotools_test.py" - "--ignore=tests/nchilada_test.py" - "--ignore=tests/ramses_new_ptcl_format_test.py" - "--ignore=tests/ramses_test.py" - "--ignore=tests/rockstar_test.py" - "--ignore=tests/sph_image_test.py" - "--ignore=tests/sph_smooth_test.py" - "--ignore=tests/subfind_test.py" - "--ignore=tests/subfindhdf_gadget4_test.py" - "--ignore=tests/tipsy_test.py" - "-k" - (string-append - "not test_div_curl_smoothing" - " and not test_float_kd" - " and not test_kd_delete" - " and not test_kd_issue_88" - " and not test_kdtree_from_existing_kdtree" - " and not test_kdtree_shared_mem" - " and not test_neighbour_list" - " and not test_particles_in_sphere" - " and not test_periodic_smoothing" - " and not test_smooth" - " and not test_smooth_WendlandC2")) - #:phases - #~(modify-phases %standard-phases - (add-before 'build 'set-compiler - (lambda _ - (setenv "CC" #$(cc-for-target))))))) - (native-inputs - (list python-cython - python-pandas - python-pytest - python-setuptools - python-wheel)) - (propagated-inputs - (list python-h5py - python-matplotlib - python-numpy - python-posix-ipc - python-scipy)) - (home-page "https://pynbody.github.io/pynbody/index.html") - (synopsis "Light-weight astronomical N-body/SPH analysis for python") - (description "@code{Pynbody} is an analysis framework for N-body and hydrodynamic -astrophysical simulations supporting PKDGRAV/Gasoline, Gadget, Gadget4/Arepo, -N-Chilada and RAMSES AMR outputs.") - (license license:gpl3+))) - (define-public python-pysynphot ;; XXX: 2.0.0 was released in 2021 there are a lot of changes since that ;; time and it failed to build with python-astropy 6.0.0, use the latest @@ -8163,38 +8232,6 @@ photometric systems are available, and users can incorporate their own filters, spectra, and data.") (license license:bsd-3)))) -(define-public python-asdf-coordinates-schemas - (hidden-package - (package - (name "python-asdf-coordinates-schemas") - (version "0.4.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "asdf_coordinates_schemas" version)) - (sha256 - (base32 "1i5w1v74b84ygbd9pw9cs35bjaqs35f5iavazhjpbycqr1pf8rvh")))) - (build-system pyproject-build-system) - (arguments - (list - #:test-flags - #~(list "--numprocesses" (number->string (parallel-job-count))))) - (native-inputs - (list python-pytest - python-pytest-xdist - python-setuptools-next - python-setuptools-scm - python-wheel)) - (propagated-inputs - (list python-asdf)) - (home-page "https://github.com/asdf-format/asdf-coordinates-schemas") - (synopsis "ASDF coordinates schemas") - (description - "This package provides ASDF schemas for validating coordinates tags. -Users should not need to install this directly; instead, install an -implementation package such as asdf-astropy.") - (license license:bsd-3)))) - (define-public python-asdf-fits-schemas (hidden-package ;; This package was never released and has been archived. The schemas in @@ -8236,43 +8273,6 @@ implementation package such as asdf-astropy.") "This package provides ASDF schemas for validating FITS tags.") (license license:bsd-3))))) -(define-public python-radio-beam - (package - (name "python-radio-beam") - (version "0.3.9") - (source - (origin - (method url-fetch) - (uri (pypi-uri "radio_beam" version)) - (sha256 - (base32 "0i76hj6wyijbpxx7n1sm12f0qqw15srk6ikq2cr589lvrixylpwv")))) - (build-system pyproject-build-system) - (native-inputs - (list python-pytest-astropy - python-setuptools - python-setuptools-scm - python-wheel)) - (propagated-inputs - (list python-astropy - python-matplotlib - python-numpy - python-scipy)) - (home-page "https://radio-beam.readthedocs.io/en/latest/") - (synopsis "Operations for radio astronomy beams with Astropy") - (description - "Radio Beam is a simple toolkit for reading beam information from FITS -headers and manipulating beams. -Some example applications include: -@itemize -@item Convolution and deconvolution -@item Unit conversion (Jy to/from K) -@item Handle sets of beams for spectral cubes with varying resolution between -channels -@item Find the smallest common beam from a set of beams -@item Add the beam shape to a matplotlib plot -@end itemize") - (license license:bsd-3))) - (define-public python-roman-datamodels (package (name "python-roman-datamodels") |