diff options
| -rw-r--r-- | gnu/packages/python-xyz.scm | 49 |
1 files changed, 37 insertions, 12 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 966693104a..98315dfb49 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -17809,18 +17809,20 @@ tasks, sockets, files, locks, and queues.") (define-public python-tables (package (name "python-tables") - (version "3.10.1") + (version "3.10.2") (source (origin (method url-fetch) (uri (pypi-uri "tables" version)) (sha256 (base32 - "1kr6y4qivqy462gva4bqym3x4alhxijfqjplxax3gh5r6k3pm82a")) + "0469jrkmp0qv8cmlqkizm3b8imyc97mk9pfn66ldpyl6f4m82i15")) (snippet '(begin (use-modules (guix build utils)) + ;; TODO: Unbundle. + ;; (delete-file-recursively "hdf5-blosc") (delete-file-recursively "c-blosc"))))) - (build-system python-build-system) + (build-system pyproject-build-system) (arguments (list #:phases @@ -17839,25 +17841,48 @@ tasks, sockets, files, locks, and queues.") "\"" (search-input-file inputs "/lib/libblosc2.so") "\",\n" m))))) - (add-before 'build 'set-LD_LIBRARY_PATH + (add-before 'build 'pre-build + (lambda _ + (invoke "make" "distclean") ;Regenerate C code with Cython + (setenv "BLOSC2_DIR" #$(this-package-input "cblosc2")) + (setenv "BLOSC_DIR" #$(this-package-input "c-blosc")) + (setenv "BZIP2_DIR" #$(this-package-input "bzip2")) + (setenv "HDF5_DIR" #$(this-package-input "hdf5")) + (setenv "LZO_DIR" #$(this-package-input "lzo")))) + (add-before 'check 'pre-check (lambda _ - ;; The setup.py build system makes use of ctypes.CDLL, which - ;; uses dlopen, which looks up library names from standard - ;; locations or LD_LIBRARY_PATH. - (setenv "LD_LIBRARY_PATH" (getenv "LIBRARY_PATH")))) + (setenv "HOME" "/tmp"))) (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? - (invoke "python" "setup.py" "check"))))))) + (with-directory-excursion "/tmp" + ;; Performing only a light (yet comprehensive) subset of the + ;; test suite. If you want a more complete test, try + ;; passing the --heavy flag to this script (or set the + ;; 'heavy' parameter in case you are using tables.test() + ;; call). The whole suite will take more than 4 hours to + ;; complete on a relatively modern CPU and around 512 MB of + ;; main memory. + (invoke "python" "-m" "tables.tests.test_all")))))))) + (native-inputs + (list pkg-config + python-cython + python-pytest + python-setuptools-next + python-sphinx)) + (inputs + (list bzip2 + c-blosc + c-blosc2 + hdf5 + lzo)) (propagated-inputs (list python-blosc2 - python-numpy python-numexpr + python-numpy python-packaging python-py-cpuinfo python-typing-extensions)) - (native-inputs (list pkg-config python-cython)) - (inputs (list c-blosc c-blosc2 hdf5-1.10 bzip2 lzo zlib)) (home-page "https://www.pytables.org/") (synopsis "Hierarchical datasets for Python") (description "PyTables is a package for managing hierarchical datasets and |