diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 49 |
1 files changed, 32 insertions, 17 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index e8fb0e2d5a..3607878714 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -25155,27 +25155,42 @@ interest.") (license license:gpl3+)))) (define-public python-vireosnp - (package - (name "python-vireosnp") - (version "0.5.7") - (source - (origin - (method url-fetch) - (uri (pypi-uri "vireoSNP" version)) - (sha256 - (base32 "02ybhzivsxwnb1axlgbs63wni1j27xajnkl4jw1ps5vmsz2l4b0d")))) - (build-system pyproject-build-system) - (propagated-inputs (list python-matplotlib python-numpy python-scipy)) - (native-inputs (list python-setuptools python-wheel)) - (home-page "https://github.com/huangyh09/vireoSNP") - (synopsis "Deconvolution based on SNP for multiplexed scRNA-seq data") - (description - "This package provides a deconvolution based on Single Nucleotide + (let ((commit "e3654633f7663732572c03c5dcf9fb00ec43b653") + (revision "0")) + (package + (name "python-vireosnp") + (version (git-version "0.5.9" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/huangyh09/vireoSNP") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1wd4llm54fvc1pc4nqfdc43g637gfx1f4z4aznvdr3biy9jksqza")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (if tests? + (with-directory-excursion "examples" + (invoke "bash" "demo.sh")) + (format #f "test suite not run.~%"))))))) + (propagated-inputs (list python-matplotlib python-numpy python-scipy)) + (native-inputs (list python-setuptools)) + (home-page "https://github.com/huangyh09/vireoSNP") + (synopsis "Deconvolution based on SNP for multiplexed scRNA-seq data") + (description + "This package provides a deconvolution based on Single Nucleotide Position (SNP) for multiplexed scRNA-seq data. The name vireo stand for Variational Inference for Reconstructing Ensemble Origin by expressed SNPs in multiplexed scRNA-seq data and follows the clone identification from single-cell data named @url{https://github.com/PMBio/cardelino, cardelino}.") - (license license:asl2.0))) + (license license:asl2.0)))) (define-public ccwl (package |