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| -rw-r--r-- | gnu/packages/cran.scm | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 936f3cf593..77e89c642b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -38153,6 +38153,52 @@ range of object-specific analytical and tree-visualization functions found across a wide array of bioinformatic R packages.") (license license:gpl3))) +(define-public r-phytools + (package + (name "r-phytools") + (version "2.4-4") + (source + (origin + (method url-fetch) + (uri (cran-uri "phytools" version)) + (sha256 + (base32 "1i25dlikdx9av5653ra2709sjm9fc3fsis1yfsb7zagivi408ph9")))) + (properties `((upstream-name . "phytools"))) + (build-system r-build-system) + (propagated-inputs (list r-ape + r-clustergeneration + r-coda + r-combinat + r-deoptim + r-doparallel + r-expm + r-foreach + r-maps + r-mass + r-mnormt + r-nlme + r-numderiv + r-optimparallel + r-phangorn + r-scatterplot3d)) + (home-page "https://github.com/liamrevell/phytools") + (synopsis "Phylogenetic tools for comparative biology") + (description + "This package offers extensive tools for phylogenetic analysis. It +focuses on phylogenetic comparative biology but also includes methods for +visualizing, analyzing, manipulating, reading, writing, and inferring +phylogenetic trees. Functions for comparative biology include ancestral state +reconstruction, model fitting, and phylogeny and trait data simulation. A +broad range of plotting methods includes mapping trait evolution on trees, +projecting trees into phenotype space or geographic maps, and visualizing +correlated speciation between trees. Additional functions allow for reading, +writing, analyzing, inferring, simulating, and manipulating phylogenetic trees +and comparative data. Examples include computing consensus trees, simulating +trees and data under various models, and attaching species or clades to a tree +either randomly or non-randomly. This package provides numerous tools for +tree manipulations and analyses that are valuable for phylogenetic research.") + (license license:gpl2+))) + (define-public r-kmer (package (name "r-kmer") |