diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 42 | ||||
| -rw-r--r-- | gnu/packages/python-xyz.scm | 42 |
2 files changed, 42 insertions, 42 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 774a6f3f97..c98f6022bf 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3406,6 +3406,48 @@ annotation, provides Python genomic feature search and sequence retrieval from the managed genomes, STAR indexing and mapping and more.") (license license:gpl3+)))) +(define-public python-pysnptools + (package + (name "python-pysnptools") + (version "0.5.14") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pysnptools" version)) + (sha256 + (base32 + "1babnyky5fk93as1ybdvpz9x3x5099gkgscxflngzfswin23mspk")))) + (build-system pyproject-build-system) + ;; Tests require test data from python-bed-reader, which fetches data with + ;; python-pooch. + (arguments (list #:tests? #f)) + (propagated-inputs + (list python-bed-reader + python-cloudpickle + python-h5py + python-more-itertools + python-numpy + python-pandas + python-psutil + python-scipy)) + (native-inputs + (list python-pytest + python-pytest-cov + python-pytest-datadir + python-pytest-doctestplus + python-setuptools + python-sphinx + python-sphinx-rtd-theme + python-wheel)) + (home-page "http://microsoftgenomics.github.io/PySnpTools/") + (synopsis "Library for reading and manipulating genetic data") + (description + "PySnpTools is a library for reading and manipulating genetic data. It +can, for example, efficiently read whole PLINK *.bed/bim/fam files or parts of +those files. It can also efficiently manipulate ranges of integers using set +operators such as union, intersection, and difference.") + (license license:asl2.0))) + (define-public python-ega-download-client (package (name "python-ega-download-client") diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 3b1e90621b..1995f113d7 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -10521,48 +10521,6 @@ snippets with input parameters (e.g., the size of an array) and plotting the results.") (license license:gpl3+))) -(define-public python-pysnptools - (package - (name "python-pysnptools") - (version "0.5.14") - (source - (origin - (method url-fetch) - (uri (pypi-uri "pysnptools" version)) - (sha256 - (base32 - "1babnyky5fk93as1ybdvpz9x3x5099gkgscxflngzfswin23mspk")))) - (build-system pyproject-build-system) - ;; Tests require test data from python-bed-reader, which fetches data with - ;; python-pooch. - (arguments (list #:tests? #f)) - (propagated-inputs - (list python-bed-reader - python-cloudpickle - python-h5py - python-more-itertools - python-numpy - python-pandas - python-psutil - python-scipy)) - (native-inputs - (list python-pytest - python-pytest-cov - python-pytest-datadir - python-pytest-doctestplus - python-setuptools - python-sphinx - python-sphinx-rtd-theme - python-wheel)) - (home-page "http://microsoftgenomics.github.io/PySnpTools/") - (synopsis "Library for reading and manipulating genetic data") - (description - "PySnpTools is a library for reading and manipulating genetic data. It -can, for example, efficiently read whole PLINK *.bed/bim/fam files or parts of -those files. It can also efficiently manipulate ranges of integers using set -operators such as union, intersection, and difference.") - (license license:asl2.0))) - (define-public python-pykdtree (package (name "python-pykdtree") |