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| -rw-r--r-- | gnu/packages/bioconductor.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1bd8f9a591..3042501268 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10267,6 +10267,38 @@ data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.") (license license:gpl2+))) +(define-public r-psmatch + (package + (name "r-psmatch") + (version "1.8.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "PSMatch" version)) + (sha256 + (base32 "13w145is3d95392qqdq6qh3mrlcixbj0jzz4r590xas1qjp5d03h")))) + (properties `((upstream-name . "PSMatch"))) + (build-system r-build-system) + (propagated-inputs (list r-biocgenerics + r-biocparallel + r-igraph + r-matrix + r-mscoreutils + r-protgenerics + r-qfeatures + r-s4vectors)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/RforMassSpectrometry/PSM") + (synopsis "Handling and managing peptide spectrum matches") + (description + "The PSMatch package helps proteomics practitioners to load, handle and +manage peptide spectrum matches. It provides functions to model +peptide-protein relations as adjacency matrices and connected components, +visualise these as graphs and make informed decision about shared peptide +filtering. The package also provides functions to calculate and visualise MS2 +fragment ions.") + (license license:artistic2.0))) + (define-public r-protgear (package (name "r-protgear") |