diff options
| -rw-r--r-- | gnu/packages/graph.scm | 101 | ||||
| -rw-r--r-- | gnu/packages/python-science.scm | 113 |
2 files changed, 109 insertions, 105 deletions
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index 91698213f3..aa26853825 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -303,107 +303,6 @@ represented by horizontal lines, and edges are represented by vertical lines.") (license license:expat)))) -(define-public python-plotly - (package - (name "python-plotly") - (version "5.20.0") - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/plotly/plotly.py") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "0i22sv8p3kl84nkldbv1253kld85rbwp2pdxivxn64wwflfpqvx6")))) - (build-system pyproject-build-system) - (arguments - (list - #:test-flags - ;; 2658 passed, 18 skipped, 38 deselected, 574 warnings - #~(list "-k" (string-join - ;; python-polars is not packaged yet. - (list "not test_build_df_from_vaex_and_polars" - "test_build_df_with_hover_data_from_vaex_and_polars" - ;; ValueError - "test_bytesio" - "test_ensure_orca_ping_and_proc" - "test_kaleido_engine_to_image_returns_bytes" - "test_kaleido_fulljson" - "test_latex_fig_to_image[eps]" - "test_mimetype_combination" - "test_orca_version_number" - "test_pdf_renderer_show_override" - "test_png_renderer_mimetype" - "test_problematic_environment_variables[eps]" - "test_server_timeout_shutdown" - "test_simple_to_image[eps]" - "test_svg_renderer_show" - "test_to_image_default[eps]" - "test_topojson_fig_to_image[eps]" - "test_validate_orca" - "test_write_image_string[eps]" - "test_write_image_string_bad_extension_override" - "test_write_image_string_format_inference[eps]" - "test_write_image_writeable[eps]" - ;; XXX: check why these tests fail - "test_dependencies_not_imported" - "test_external_server_url" - "test_invalid_figure_json" - "test_lazy_imports" - "test_legend_dots" - "test_linestyle" - "test_orca_executable_path" - "test_sanitize_json[auto]" - "test_sanitize_json[json]" - "test_scraper" - "test_write_image_string_bad_extension_failure") - " and not ")) - #:phases - #~(modify-phases %standard-phases - (add-before 'build 'skip-npm - ;; npm is not packaged so build without it - (lambda _ - (setenv "SKIP_NPM" "T"))) - (add-after 'unpack 'fix-version - ;; TODO: Versioneer in Guix gets its release version from the - ;; parent directory, but the plotly package is located inside a - ;; depth 3 subdirectory. Try to use versioneer if possible. - (lambda _ - (substitute* "packages/python/plotly/setup.py" - (("version=versioneer.get_version\\(),") - (format #f "version=~s," #$version))) - (substitute* "packages/python/plotly/plotly/version.py" - (("__version__ = get_versions\\(\\)\\[\"version\"\\]") - (format #f "__version__ = ~s" #$version))))) - (add-after 'fix-version 'chdir - (lambda _ - (chdir "packages/python/plotly")))))) - (native-inputs - (list python-ipywidgets - python-pytest - python-setuptools - python-wheel - python-xarray)) - (propagated-inputs - (list python-ipython - python-pandas - python-pillow - ;; python-polars - python-requests - python-retrying - python-scikit-image - python-statsmodels - python-tenacity - python-vaex-core)) - (home-page "https://plotly.com/python/") - (synopsis "Interactive plotting library for Python") - (description "Plotly's Python graphing library makes interactive, -publication-quality graphs online. Examples of how to make line plots, scatter -plots, area charts, bar charts, error bars, box plots, histograms, heatmaps, -subplots, multiple-axes, polar charts, and bubble charts.") - (license license:expat))) - (define-public python-louvain (package (name "python-louvain") diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index e45d3e3fff..41d4579d8f 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -1,11 +1,12 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2015, 2016, 2020-2025 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015, 2016, 2018, 2020-2025 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015 Federico Beffa <beffa@fbengineering.ch> ;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com> ;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com> -;;; Copyright © 2016, 2022-2025 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2021-2025 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016-2020, 2022 Marius Bakke <marius@gnu.org> -;;; Copyright © 2019 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018, 2022 Leo Famulari <leo@famulari.name> ;;; Copyright © 2019, 2021, 2022, 2023, 2024 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2019 Giacomo Leidi <goodoldpaul@autistici.org> ;;; Copyright © 2020 Pierre Langlois <pierre.langlois@gmx.com> @@ -14,15 +15,17 @@ ;;; Copyright © 2021 Roel Janssen <roel@gnu.org> ;;; Copyright © 2021 Paul Garlick <pgarlick@tourbillion-technology.com> ;;; Copyright © 2021 Arun Isaac <arunisaac@systemreboot.net> +;;; Copyright © 2021 Vagrant Cascadian <vagrant@debian.org> ;;; Copyright © 2021, 2023 Felix Gruber <felgru@posteo.net> ;;; Copyright © 2022 Malte Frank Gerdes <malte.f.gerdes@gmail.com> ;;; Copyright © 2021, 2022 Guillaume Le Vaillant <glv@posteo.net> -;;; Copyright © 2022 Leo Famulari <leo@famulari.name> ;;; Copyright © 2022 Paul A. Patience <paul@apatience.com> ;;; Copyright © 2022 Wiktor Żelazny <wzelazny@vurv.cz> ;;; Copyright © 2022 Eric Bavier <bavier@posteo.net> +;;; Copyright © 2022 kiasoc5 <kiasoc5@tutanota.com> ;;; Copyright © 2022, 2024 Antero Mejr <antero@mailbox.org> ;;; Copyright © 2022 jgart <jgart@dismail.de> +;;; Copyright © 2022 Sarah Morgensen <iskarian@mgsn.dev> ;;; Copyright © 2023, 2024 Troy Figiel <troy@troyfigiel.com> ;;; Copyright © 2024-2025 Sharlatan Hellseher <sharlatanus@gmail.com> ;;; Copyright © 2024 Marco Baggio <marco.baggio@mdc-berlin.de> @@ -4330,6 +4333,108 @@ and more @end itemize") (license license:gpl3))) +(define-public python-plotly + (package + (name "python-plotly") + (version "5.20.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/plotly/plotly.py") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0i22sv8p3kl84nkldbv1253kld85rbwp2pdxivxn64wwflfpqvx6")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + ;; 2658 passed, 18 skipped, 38 deselected, 574 warnings + #~(list "-k" (string-join + ;; python-polars is not packaged yet. + (list "not test_build_df_from_vaex_and_polars" + "test_build_df_with_hover_data_from_vaex_and_polars" + ;; ValueError + "test_bytesio" + "test_ensure_orca_ping_and_proc" + "test_kaleido_engine_to_image_returns_bytes" + "test_kaleido_fulljson" + "test_latex_fig_to_image[eps]" + "test_mimetype_combination" + "test_orca_version_number" + "test_pdf_renderer_show_override" + "test_png_renderer_mimetype" + "test_problematic_environment_variables[eps]" + "test_server_timeout_shutdown" + "test_simple_to_image[eps]" + "test_svg_renderer_show" + "test_to_image_default[eps]" + "test_topojson_fig_to_image[eps]" + "test_validate_orca" + "test_write_image_string[eps]" + "test_write_image_string_bad_extension_override" + "test_write_image_string_format_inference[eps]" + "test_write_image_writeable[eps]" + ;; XXX: check why these tests fail + "test_dependencies_not_imported" + "test_external_server_url" + "test_invalid_figure_json" + "test_lazy_imports" + "test_legend_dots" + "test_linestyle" + "test_orca_executable_path" + "test_sanitize_json[auto]" + "test_sanitize_json[json]" + "test_scraper" + "test_write_image_string_bad_extension_failure") + " and not ")) + #:phases + #~(modify-phases %standard-phases + (add-before 'build 'skip-npm + ;; npm is not packaged so build without it + (lambda _ + (setenv "SKIP_NPM" "T"))) + (add-after 'unpack 'fix-version + ;; TODO: Versioneer in Guix gets its release version from the + ;; parent directory, but the plotly package is located inside a + ;; depth 3 subdirectory. Try to use versioneer if possible. + (lambda _ + (substitute* "packages/python/plotly/setup.py" + (("version=versioneer.get_version\\(),") + (format #f "version=~s," #$version))) + (substitute* "packages/python/plotly/plotly/version.py" + (("__version__ = get_versions\\(\\)\\[\"version\"\\]") + (format #f "__version__ = ~s" #$version))))) + (add-after 'fix-version 'chdir + (lambda _ + (chdir "packages/python/plotly")))))) + (native-inputs + (list python-ipywidgets + python-pytest + python-setuptools + python-wheel + python-xarray)) + (propagated-inputs + (list python-ipython + python-pandas + python-pillow + ;; python-polars + python-requests + python-retrying + python-scikit-image + python-statsmodels + python-tenacity + python-vaex-core)) + (home-page "https://plotly.com/python/") + (synopsis "Interactive plotting library for Python") + (description + "Plotly's Python graphing library makes interactive,publication-quality +graphs online. Examples of how to make line plots, scatter plots, area +charts, bar charts, error bars, box plots, histograms, heatmaps, subplots, +multiple-axes, polar charts, and bubble charts.") + (license license:expat))) + (define-public python-plotnine (package (name "python-plotnine") |