diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 156 |
1 files changed, 80 insertions, 76 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 85c527dc32..95bd62b5a7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -290,16 +290,17 @@ automatically pruning objects to maintain the constraints.") (define-public r-castor (package (name "r-castor") - (version "1.7.11") + (version "1.8.0") (source (origin (method url-fetch) (uri (cran-uri "castor" version)) (sha256 (base32 - "1cxjgwbsacjcc10qdch6pndjxqnk20hhamxqg0lckszvkyb67yn3")))) + "0caw206hndfzypj33w6npvppdc5hhq1q71wriqd0ck9f238rfi3c")))) (properties `((upstream-name . "castor"))) (build-system r-build-system) - (propagated-inputs (list r-matrix r-naturalsort r-rcpp r-rspectra)) + (propagated-inputs (list r-jsonlite r-matrix r-naturalsort r-rcpp + r-rspectra)) (home-page "https://cran.r-project.org/package=castor") (synopsis "Efficient phylogenetics on large trees") (description @@ -2117,13 +2118,13 @@ known as Dynamic Linear Models.") (define-public r-zcompositions (package (name "r-zcompositions") - (version "1.5") + (version "1.5.0-1") (source (origin (method url-fetch) (uri (cran-uri "zCompositions" version)) (sha256 (base32 - "1hfgw3h3si5qkynzc520648pskw26bckcji1qgi5fkag6fd8l08p")))) + "0sx6i03iyg4jxmjiyzkssz3i6c8nv29wwhbl7yd0wxapwpakmlj8")))) (properties `((upstream-name . "zCompositions"))) (build-system r-build-system) (propagated-inputs @@ -2268,14 +2269,14 @@ variables.") (define-public r-ggpp (package (name "r-ggpp") - (version "0.5.5") + (version "0.5.6") (source (origin (method url-fetch) (uri (cran-uri "ggpp" version)) (sha256 (base32 - "0nysan87vgy0pbcks3bychm84zcwx9pf4p250b45ghimhvxh5cvm")))) + "0xnjbxd1lkg85c2hsx7cgxqsqb3dc0pma8jwdlqfgg7d519d60xa")))) (properties `((upstream-name . "ggpp"))) (build-system r-build-system) (propagated-inputs @@ -3485,13 +3486,13 @@ read a protected key.") (define-public r-astsa (package (name "r-astsa") - (version "2.0") + (version "2.1") (source (origin (method url-fetch) (uri (cran-uri "astsa" version)) (sha256 - (base32 "0rv4fnz5bbd6f8b6fwa2ljdjq5yx0qi7hcbhrgvrbibl2pzfm7w7")))) + (base32 "0rnbacq5vbnlzfssj13ixgkg0d1wixh2m3dcsi66c63wx65rm3d3")))) (properties `((upstream-name . "astsa"))) (build-system r-build-system) (home-page "https://github.com/nickpoison/astsa/") @@ -3788,14 +3789,14 @@ sources.") (define-public r-reprex (package (name "r-reprex") - (version "2.0.2") + (version "2.1.0") (source (origin (method url-fetch) (uri (cran-uri "reprex" version)) (sha256 (base32 - "14khx09yzn97xhags48lvym1g37h1l2ymvw6r1jlldhjc7i1cnx8")))) + "0ld90pkw2r7z115xdnyqk4p39vnxrc8jnn57sl4bkpg5frczw38a")))) (build-system r-build-system) (propagated-inputs (list r-callr @@ -5981,14 +5982,14 @@ colors are provided.") (define-public r-glue (package (name "r-glue") - (version "1.6.2") + (version "1.7.0") (source (origin (method url-fetch) (uri (cran-uri "glue" version)) (sha256 (base32 - "1gzxk5jgdh2xq9r7z09xs306ygzf27vhg3pyfl7ck1755gqii9cx")))) + "1p4699p68k9f8d76bmgx5xabay6xjrcgajckzqxyn6icym8ipx8s")))) (build-system r-build-system) (properties ;; knitr depends on glue, so we can't add knitr here to build the @@ -6267,13 +6268,13 @@ value for each cluster in a dendrogram.") (define-public r-rcpp (package (name "r-rcpp") - (version "1.0.11") + (version "1.0.12") (source (origin (method url-fetch) (uri (cran-uri "Rcpp" version)) (sha256 - (base32 "0pzssba79z90rax2v02r5m1a6ysljfnvq03r6q2nr72rd0q7qxfz")))) + (base32 "1l1b0q2r6q2bjr4wvj98kp9844fyrsn2ppx339v05vmy8g65jwqc")))) (build-system r-build-system) (home-page "https://www.rcpp.org") (synopsis "Seamless R and C++ integration") @@ -8356,20 +8357,20 @@ similar to finite mixture models.") (define-public r-rpostgresql (package (name "r-rpostgresql") - (version "0.7-5") + (version "0.7-6") (source (origin (method url-fetch) (uri (cran-uri "RPostgreSQL" version)) (sha256 (base32 - "18czy93l9dg321pbvrfmlwrjahpbkiw0sll4pkkqm55xapp02m3b")))) - (properties `((upstream-name . "RPostgreSQL"))) + "0b1dmx5pcd4v1xg25ihxilkga3zdblb1xy896ik5fdkaidq3jn9q")))) + (properties + '((upstream-name . "RPostgreSQL") + (updater-extra-inputs . ("postgresql")))) (build-system r-build-system) - (inputs - (list postgresql)) - (propagated-inputs - (list r-dbi)) + (inputs (list postgresql)) + (propagated-inputs (list r-dbi)) (home-page "https://github.com/tomoakin/RPostgreSQL") (synopsis "R interface to the PostgreSQL database system") (description @@ -8733,14 +8734,14 @@ for certain use cases.") (define-public r-ggrepel (package (name "r-ggrepel") - (version "0.9.4") + (version "0.9.5") (source (origin (method url-fetch) (uri (cran-uri "ggrepel" version)) (sha256 (base32 - "0gngsx87rcqijdr684bgpnazdlz3vj4brzw0fic0jdsrf1rb9aw1")))) + "1alcrw304bn6c2i64rxxjkzk3il19gq30gyj3sb4blradkjh1rni")))) (build-system r-build-system) (propagated-inputs (list r-ggplot2 r-rcpp r-rlang r-scales r-withr)) @@ -14236,13 +14237,13 @@ libxlsxwriter.") (define-public r-writexls (package (name "r-writexls") - (version "6.4.0") + (version "6.5.0") (source (origin (method url-fetch) (uri (cran-uri "WriteXLS" version)) (sha256 (base32 - "1dqr98kx930y6mcvb9b39xiwshhs250gkd2vw2v6iil34sl90jv4")))) + "1rkc0r6l7cfz7h83i7gw6g0nlyy347mdh6bj73j0f8mdv3nmwwn4")))) (properties `((upstream-name . "WriteXLS"))) (build-system r-build-system) (inputs (list perl)) @@ -16136,13 +16137,13 @@ handle data from simple random samples as well as complex surveys.") (define-public r-tarchetypes (package (name "r-tarchetypes") - (version "0.7.10") + (version "0.7.11") (source (origin (method url-fetch) (uri (cran-uri "tarchetypes" version)) (sha256 (base32 - "14k9p98yv5vgpi1bxngqzmaibdx9h7wyn8k1hw5imvlg4cbwm675")))) + "1iqrz27n8ndazx97ngqbz5yz5ppyimpbxam30zgdwnnzf963s5ym")))) (properties `((upstream-name . "tarchetypes"))) (build-system r-build-system) (propagated-inputs (list r-digest @@ -16170,13 +16171,13 @@ were influenced by the drake R package by Will Landau (2018) (define-public r-targets (package (name "r-targets") - (version "1.4.0") + (version "1.4.1") (source (origin (method url-fetch) (uri (cran-uri "targets" version)) (sha256 (base32 - "0nbvyh1v88lz1fv09ap9p6qw4zw23f1rvmv2f01w1r17z53z7w3c")))) + "0kax8nj66jbcp8sbv7zl68hzf4clz5m50fibrcypnzvpamhafw1q")))) (properties `((upstream-name . "targets"))) (build-system r-build-system) (propagated-inputs (list r-base64url @@ -21690,14 +21691,14 @@ users of rARPACK are advised to switch to the RSpectra package.") (define-public r-compositions (package (name "r-compositions") - (version "2.0-6") + (version "2.0-7") (source (origin (method url-fetch) (uri (cran-uri "compositions" version)) (sha256 (base32 - "0d0wlrwfpjvz02cwrqpg5bnrf8isz359dl9qqxn9yb6czpmp9ls5")))) + "1j1qa0lkb7ywh0q79dklhw4gvkxgvk3qhw3rx9srrlrc7jv22hml")))) (build-system r-build-system) (propagated-inputs (list r-bayesm r-mass r-robustbase r-tensora)) @@ -24037,14 +24038,14 @@ package.") (define-public r-yulab-utils (package (name "r-yulab-utils") - (version "0.1.2") + (version "0.1.3") (source (origin (method url-fetch) (uri (cran-uri "yulab.utils" version)) (sha256 (base32 - "0pjm4fnc30kv8xl6akh9y0jpqdsww83558cvyfl4j3xxnafrk8cs")))) + "0yh29d28i67z3wyif72lr35ki92rqv6rljdjwj28559f7n864yjv")))) (properties `((upstream-name . "yulab.utils"))) (build-system r-build-system) (propagated-inputs @@ -24533,14 +24534,14 @@ graphics using Vega.") (define-public r-gbm (package (name "r-gbm") - (version "2.1.8.1") + (version "2.1.9") (source (origin (method url-fetch) (uri (cran-uri "gbm" version)) (sha256 (base32 - "02z85d7zp3i5x8r8q005hyw2rx1ck7lw81q7a3lqwraj8l95c94d")))) + "1r5d8mkg4z14l3743h39r35r0qqjx5p40ixdkcc5iyjab0fzm24x")))) (build-system r-build-system) (propagated-inputs (list r-lattice r-survival)) @@ -26498,14 +26499,14 @@ on graphs of millions of nodes (as long as they can fit in memory).") (define-public r-patchwork (package (name "r-patchwork") - (version "1.1.3") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "patchwork" version)) (sha256 (base32 - "07npkbalfl2d9aix02m2srxgmd8ymar6v0x65ighg3nq9d7l4xp9")))) + "18b83gsv8idi5d062m9dvb46r7kxda97sa72pzllshhcaq9ylcfc")))) (build-system r-build-system) (propagated-inputs (list r-cli r-ggplot2 r-gtable r-rlang)) @@ -31133,18 +31134,19 @@ machine learning, visually representing text and text analyses, and more.") (define-public r-topicmodels (package (name "r-topicmodels") - (version "0.2-15") + (version "0.2-16") (source (origin (method url-fetch) (uri (cran-uri "topicmodels" version)) (sha256 (base32 - "1l3pmz6n0sd57bf3d16m9766285d2pmndmv36rf5pffpwiw0zdbi")))) - (properties `((upstream-name . "topicmodels"))) + "01g9avk0ldqnz15n8112vad31c1n7r6rih5dh6x3383vvmjrqp0d")))) + (properties + '((upstream-name . "topicmodels") + (updater-extra-inputs . ("gsl")))) (build-system r-build-system) - (inputs - (list gsl)) + (inputs (list gsl)) (propagated-inputs (list r-modeltools r-slam r-tm)) (home-page "https://cran.r-project.org/package=topicmodels") @@ -31432,14 +31434,14 @@ perform @dfn{exploratory mediation} (XMed).") (define-public r-stanheaders (package (name "r-stanheaders") - (version "2.26.28") + (version "2.32.5") (source (origin (method url-fetch) (uri (cran-uri "StanHeaders" version)) (sha256 (base32 - "1s1xgvn5c1vjikm1dx9g0qm2k8m24clylgp7zssmfhx6sfb8v2lk")))) + "0wqps6xy2xypxsg3p3grdiw67a0xla3vh9x9hcf2ln03yhgkn4jl")))) (properties `((upstream-name . "StanHeaders"))) (build-system r-build-system) (inputs (list pandoc)) @@ -32190,15 +32192,17 @@ techniques to average Bayesian predictive distributions.") (define-public r-rstan (package (name "r-rstan") - (version "2.32.3") + (version "2.32.5") (source (origin (method url-fetch) (uri (cran-uri "rstan" version)) (sha256 (base32 - "17alp92kj9mnlkzplk7zd83sv2zi2h7yc44fx5f7nz3dpwd9x7d2")))) - (properties `((upstream-name . "rstan"))) + "0m655pf0lrhqh2mzylximd2vch9wy252k4zwyfqn1sfwmx642dva")))) + (properties + '((upstream-name . "rstan") + (updater-extra-native-inputs . ("tzdata-for-tests")))) (build-system r-build-system) (arguments `(#:phases @@ -37115,13 +37119,13 @@ implemented as @code{R6} classes.") (define-public r-mlr3 (package (name "r-mlr3") - (version "0.17.1") + (version "0.17.2") (source (origin (method url-fetch) (uri (cran-uri "mlr3" version)) (sha256 (base32 - "0q6px0l0ab3xcrf6ylnw9a3i50mnks3hlgqj424d6bpqdjqyh5s4")))) + "0kcny3wxc7qc2538hxxdzs9bw4pq55s4abhlnpf1r13b2gkns323")))) (build-system r-build-system) (propagated-inputs (list r-backports @@ -39518,14 +39522,14 @@ fully reproducible.") (define-public r-paws-common (package (name "r-paws-common") - (version "0.6.4") + (version "0.7.0") (source (origin (method url-fetch) (uri (cran-uri "paws.common" version)) (sha256 (base32 - "1pzgwljrk3maxcbmiy3yiccijm6c2ach8f9kzpqr7w5k5vkyhpvx")))) + "05rld34brjc32p9f9cbqyyh208rh9idnyih33cpw7bz7bfyicnqm")))) (properties `((upstream-name . "paws.common"))) (build-system r-build-system) (propagated-inputs @@ -39549,14 +39553,14 @@ Service (S3).") (define-public r-paws-customer-engagement (package (name "r-paws-customer-engagement") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "paws.customer.engagement" version)) (sha256 (base32 - "0skfya3m9i36dd0jqvnnc72k1h3lb4s3fjkvg7na6aq6xgpjh4jv")))) + "1380waqavwga17fvdzfpag4snzynkykh3pnia5bi73476y7myj5h")))) (properties `((upstream-name . "paws.customer.engagement"))) (build-system r-build-system) @@ -39597,13 +39601,13 @@ more.") (define-public r-paws-developer-tools (package (name "r-paws-developer-tools") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "paws.developer.tools" version)) (sha256 - (base32 "13i5yi23xsrks1dsw0k3cqzr2gqj8p23yajb3a7drim6d4rpsaxl")))) + (base32 "177q7x8l9asyidpc7j20xwpyk0bd9x9m20cy4qzlnnmr14anyvjm")))) (properties `((upstream-name . "paws.developer.tools"))) (build-system r-build-system) (propagated-inputs @@ -39619,13 +39623,13 @@ deployment, and more.") (define-public r-paws-end-user-computing (package (name "r-paws-end-user-computing") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "paws.end.user.computing" version)) (sha256 - (base32 "0v3ng20vrp5cvpbgipwwpvyhi995n2rp8jls0kklkrjax41x62cn")))) + (base32 "0qz5kps9819yfqjdqjmv7wx70ll7xayfxmd5dc867k14i41f91cm")))) (properties `((upstream-name . "paws.end.user.computing"))) (build-system r-build-system) (propagated-inputs @@ -39641,14 +39645,14 @@ and more.") (define-public r-paws-application-integration (package (name "r-paws-application-integration") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "paws.application.integration" version)) (sha256 (base32 - "0hilnczvamdv3bi1v6hdki05h8qqh0wlgvh5ilh09113005fpz98")))) + "1sgzp0yr1jsmbyzyk26m762rhpxb89wrwqqvrrw3xr1ib0cg06ah")))) (properties `((upstream-name . "paws.application.integration"))) (build-system r-build-system) @@ -39665,14 +39669,14 @@ Simple Notification Service (SNS) publish/subscribe messaging, and more.") (define-public r-paws-security-identity (package (name "r-paws-security-identity") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "paws.security.identity" version)) (sha256 (base32 - "081339201j19y8y28h0dhr876ii82zpfyqddc21lvmg27z53hj4x")))) + "01gh761ykc4h81whn649bm28b01njqm1kjqkn9l4n7hhnalddy06")))) (properties `((upstream-name . "paws.security.identity"))) (build-system r-build-system) @@ -39690,14 +39694,14 @@ more.") (define-public r-paws-analytics (package (name "r-paws-analytics") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "paws.analytics" version)) (sha256 (base32 - "1x7ix8x0ks357b7gf2skixsd0najjbn8hnq7p6a354p5h7bz39b4")))) + "07nwa39mn749a9rqb683wf19kd8si7ksws87annbldmd57r072l8")))) (properties `((upstream-name . "paws.analytics"))) (build-system r-build-system) @@ -39714,14 +39718,14 @@ Elasticsearch search engine, and more.") (define-public r-paws-machine-learning (package (name "r-paws-machine-learning") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "paws.machine.learning" version)) (sha256 (base32 - "0cwmriprwrz446q4d5ljkpvwdhmamnl98g1ks6p35vbjiv4imk21")))) + "0zcw758xsw2360571dj215gyd1amaxx07i58h1r6r5zys940lxis")))) (properties `((upstream-name . "paws.machine.learning"))) (build-system r-build-system) @@ -39738,14 +39742,14 @@ natural language processing, speech recognition, translation, and more.") (define-public r-paws-management (package (name "r-paws-management") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "paws.management" version)) (sha256 (base32 - "0lp8s4caxppwxsra6ijcz1dzkmnznwrrs92y87387vq53y3icc6m")))) + "0k40lrgxx91bijj3648zsgj55x120mhmx8dyx3hm2yvh2k96ks7h")))) (properties `((upstream-name . "paws.management"))) (build-system r-build-system) @@ -39762,14 +39766,14 @@ monitoring, Auto Scaling for automatically scaling resources, and more.") (define-public r-paws-networking (package (name "r-paws-networking") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "paws.networking" version)) (sha256 (base32 - "1imq29nxy5hxz2vlijdj2jl0lllvm3plb3jwpvsx1wlcvhpz0in3")))) + "0qs6bp0vlbazxir9jmdcnazh90yrvhrw6k9046id73hw1j7h5zaf")))) (properties `((upstream-name . "paws.networking"))) (build-system r-build-system) @@ -39786,14 +39790,14 @@ CloudFront content delivery, load balancing, and more.") (define-public r-paws-database (package (name "r-paws-database") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "paws.database" version)) (sha256 (base32 - "1rnjjdb4l7a943cawkkzfjkg8shy2vy5d9mcl2p5ms191lw056bn")))) + "0nlkbnyxd3znmvqxqb3w43sznacmikq32d9fihyc1dx7ghvmf61z")))) (properties `((upstream-name . "paws.database"))) (build-system r-build-system) (propagated-inputs @@ -39810,14 +39814,14 @@ database, and more.") (define-public r-paws-storage (package (name "r-paws-storage") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "paws.storage" version)) (sha256 (base32 - "0yr99328rwm6i95xhp4yds6dzfvrvbr7ys2hy17iqbyij958j0m4")))) + "0v2g1shv9m4h2fz2lvjad479g3nmxc92wlyrxj4s7fifzzs2pd97")))) (properties `((upstream-name . "paws.storage"))) (build-system r-build-system) (propagated-inputs @@ -39832,14 +39836,14 @@ services, including Simple Storage Service (S3).") (define-public r-paws-compute (package (name "r-paws-compute") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "paws.compute" version)) (sha256 (base32 - "0q0xikrq7095l8fhii2jyjxfbihhnlm7nzzbspfqdh8xbr7g4kld")))) + "1vsxwzqgk0004nmfy79pd0zc208fczay95p7h16mzqgds9586ma1")))) (properties `((upstream-name . "paws.compute"))) (build-system r-build-system) (propagated-inputs |