diff options
Diffstat (limited to 'gnu/packages/machine-learning.scm')
| -rw-r--r-- | gnu/packages/machine-learning.scm | 111 |
1 files changed, 108 insertions, 3 deletions
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 14fc2a0a72..1616738399 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2015-2023 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015-2024 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2016, 2020-2023 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016, 2017, 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com> @@ -21,6 +21,7 @@ ;;; Copyright © 2023 zamfofex <zamfofex@twdb.moe> ;;; Copyright © 2023 Navid Afkhami <navid.afkhami@mdc-berlin.de> ;;; Copyright © 2023 Zheng Junjie <873216071@qq.com> +;;; Copyright © 2023 Troy Figiel <troy@troyfigiel.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -812,6 +813,94 @@ SentencePiece allows us to make a purely end-to-end system that does not depend on language-specific pre- or post-processing.") (license license:asl2.0))) +(define-public python-hopcroftkarp + ;; This commit fixes a broken import, but has not been released to PyPI. + (let ((commit "2846e1dd3265d95d2bddb0cf4190b830cbb4efe6") + (revision "1")) + (package + (name "python-hopcroftkarp") + (version (git-version "1.2.5" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/sofiatolaosebikan/hopcroftkarp") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "018ilrp41fcclmb5lsml3aijwbmhbq3m7wy65hr1fryj0avic8fr")))) + (build-system pyproject-build-system) + (home-page "https://github.com/sofiatolaosebikan/hopcroftkarp") + (synopsis "Implementation of the Hopcroft-Karp algorithm") + (description + "This package implements the Hopcroft-Karp algorithm, producing a maximum +cardinality matching from a bipartite graph.") + (license license:gpl3)))) + +(define-public python-persim + (package + (name "python-persim") + (version "0.3.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "persim" version)) + (sha256 + (base32 "0q8wfakx8q4h3ryvw8cba0v6z7xn9139qkrzs3mi1ggyzacnx9d7")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-deprecated + python-hopcroftkarp + python-joblib + python-matplotlib + python-numpy + python-scikit-learn + python-scipy)) + (native-inputs (list python-pytest python-pytest-cov)) + (home-page "https://persim.scikit-tda.org") + (synopsis "Tools for analyzing persistence diagrams in Python") + (description + "This package includes a variety of tools used to analyze persistence diagrams. +It currently houses implementations of +@itemize +@item Persistence images +@item Persistence landscapes +@item Bottleneck distance +@item Modified Gromov–Hausdorff distance +@item Sliced Wasserstein kernel +@item Heat kernel +@item Diagram plotting +@end itemize +") + (license license:expat))) ; MIT License + +(define-public python-ripser + (package + (name "python-ripser") + (version "0.6.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ripser" version)) + (sha256 + (base32 "1575nwsn6b29z7w1mjk23ri83bxq2b4ld979hpgm174642a3x6vs")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-numpy python-persim python-scikit-learn + python-scipy)) + (native-inputs (list python-cython python-pytest)) + (home-page "https://ripser.scikit-tda.org") + (synopsis "Persistent homology library for Python") + (description + "This package implements a variety of persistent homology algorithms. It +provides an interface for +@itemize +@item computing persistence cohomology of sparse and dense data sets +@item visualizing persistence diagrams +@item computing lowerstar filtrations on images +@item computing representative cochains +@end itemize +") + (license license:expat))) ; MIT License + (define-public python-sacrebleu (package (name "python-sacrebleu") @@ -1151,6 +1240,11 @@ in terms of new algorithms.") (build-system python-build-system) (arguments '(#:phases (modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + ;; Does this difference really matter? + (substitute* "requirements.txt" + (("3.20.1") "3.20.2")))) (add-before 'build 'pass-cmake-arguments (lambda* (#:key outputs #:allow-other-keys) ;; Pass options to the CMake-based build process. @@ -1235,7 +1329,13 @@ operators and standard data types.") '(begin (delete-file-recursively "third_party") (substitute* "onnx/backend/test/runner/__init__.py" - (("urlretrieve\\(.*") "raise unittest.SkipTest('Skipping download')\n")))))))) + (("urlretrieve\\(.*") "raise unittest.SkipTest('Skipping download')\n")))))) + (arguments + ;; reuse build system tweaks + (substitute-keyword-arguments (package-arguments onnx) + ((#:phases phases) + #~(modify-phases #$phases + (delete 'relax-requirements))))))) (define-public python-onnx ;; This used to be called "python-onnx" because it provided nothing but @@ -1262,7 +1362,12 @@ operators and standard data types.") (modules '((guix build utils))) (snippet '(delete-file-recursively "third_party")))) (build-system python-build-system) - (arguments (package-arguments onnx)) ;reuse build system tweaks + (arguments + ;; reuse build system tweaks + (substitute-keyword-arguments (package-arguments onnx) + ((#:phases phases) + #~(modify-phases #$phases + (delete 'relax-requirements))))) (native-inputs (list cmake python-pytest python-pytest-runner python-nbval python-coverage)) |