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Diffstat (limited to 'gnu/packages/python-science.scm')
-rw-r--r-- | gnu/packages/python-science.scm | 83 |
1 files changed, 83 insertions, 0 deletions
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 39ba0dad96..58b7f3b3ee 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -142,6 +142,32 @@ optimization problems in Python.") numerical software for solving convex second-order cone programs (SOCPs).") (license license:gpl3))) +(define-public python-formulaic + (package + (name "python-formulaic") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "formulaic" version)) + (sha256 + (base32 "18gvd3f2x358jj0df8vx5fhhnvzw047rsrs03vmvqnxaly97kpb4")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-astor + python-cached-property + python-interface-meta + python-numpy + python-pandas + python-scipy + python-typing-extensions + python-wrapt)) + (native-inputs (list python-hatchling python-hatch-vcs python-pytest)) + (home-page "https://github.com/matthewwardrop/formulaic") + (synopsis "Implementation of Wilkinson formulas") + (description "Formulaic is a high-performance implementation of Wilkinson +formulas for Python.") + (license license:expat))) + (define-public python-osqp (package (name "python-osqp") @@ -582,6 +608,63 @@ implements several methods for sequential model-based optimization. @code{skopt} aims to be accessible and easy to use in many contexts.") (license license:bsd-3))) +(define-public python-scikit-survival + (let ((revision "1") + ;; We need a later commit for support of a more recent sklearn and + ;; numpy 2. + (commit "bceb53ebb8306f959c70fae2be9d552f33dd3f21")) + (package + (name "python-scikit-survival") + (version (git-version "0.22.2" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/sebp/scikit-survival") + (commit commit) + ;; This package contains a copy of Eigen. It would be good to + ;; figure out how to use our own Eigen package. + (recursive? #true))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1m3z64nv4sgay0mdrrw4q4z5ylx63a9w2x43w1r4g8kpg7z9rdfc")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-before 'build 'set-version + (lambda _ + (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" + #$(version-major+minor version))))))) + (propagated-inputs + (list python-ecos + python-importlib-resources + python-joblib + python-numexpr + python-numpy + python-osqp + python-pandas + python-scikit-learn + python-scipy)) + (native-inputs + (list python-black + python-pypa-build + python-coverage + python-cython-3 + python-packaging + python-pytest + python-setuptools-scm + python-tomli + python-tox)) + (home-page "https://github.com/sebp/scikit-survival") + (synopsis "Survival analysis built on top of scikit-learn") + (description "Scikit-survival is a Python module for survival analysis +built on top of scikit-learn. It allows doing survival analysis while +utilizing the power of scikit-learn, e.g., for pre-processing or doing +cross-validation.") + (license license:gpl3+)))) + (define-public python-tdda (package (name "python-tdda") |