diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 37 |
1 files changed, 27 insertions, 10 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 9691c48781..baeeed31d3 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -3872,24 +3872,41 @@ library.") (define-public python-h5py (package (name "python-h5py") - (version "3.8.0") + (version "3.13.0") (source (origin (method url-fetch) (uri (pypi-uri "h5py" version)) (sha256 - (base32 "0pyr6z4h2xqbp49yx2i1401gl6yqh03h771zslwcy0201hpxiskg")))) - (build-system python-build-system) + (base32 "1hq5f5mnkv2138xsq7k7qncf6b7zc0cmm2fhhpd2603j31jy8w0q")))) + (build-system pyproject-build-system) (arguments - '(#:phases (modify-phases %standard-phases - (add-after 'unpack 'fix-hdf5-paths - (lambda* (#:key inputs #:allow-other-keys) - (setenv "HDF5_DIR" - (assoc-ref inputs "hdf5"))))))) + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'fix-hdf5-paths + (lambda _ + (setenv "HDF5_DIR" #$(this-package-input "hdf5")))) + ;; The tests only work after being installed. + (delete 'check) + (add-after 'install 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (setenv "H5PY_TEST_CHECK_FILTERS" "1") + (with-directory-excursion (site-packages inputs outputs) + (invoke "pytest" "-vv")))))))) (propagated-inputs (list python-six python-numpy)) (inputs (list hdf5)) - (native-inputs (list pkg-config python-cython python-ipython - python-pkgconfig python-pytest)) + (native-inputs + (list pkg-config + python-cython + python-ipython + python-pkgconfig + python-pytest + ;; Required to run tests, but the MPI tests are skipped anyway. + python-pytest-mpi + python-setuptools + python-wheel)) (home-page "https://www.h5py.org/") (synopsis "Read and write HDF5 files from Python") (description |