diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 76 |
1 files changed, 23 insertions, 53 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 41b135586b..958a391eeb 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -52,7 +52,7 @@ ;;; Copyright © 2018-2024 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2018 Oleg Pykhalov <go.wigust@gmail.com> ;;; Copyright © 2018, 2019, 2021, 2023 Clément Lassieur <clement@lassieur.org> -;;; Copyright © 2018, 2019, 2020, 2021, 2022, 2023 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2018-2024 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2018 Luther Thompson <lutheroto@gmail.com> ;;; Copyright © 2018 Vagrant Cascadian <vagrant@debian.org> ;;; Copyright © 2015, 2018 Pjotr Prins <pjotr.guix@thebird.nl> @@ -16778,76 +16778,46 @@ tasks, sockets, files, locks, and queues.") (define-public python-tables (package (name "python-tables") - (version "3.7.0") + (version "3.10.1") (source (origin (method url-fetch) (uri (pypi-uri "tables" version)) (sha256 (base32 - "1zp1qmas4pgcag9sn0gwd40c6ibn9bg056d6ckjq7agjsrx8hap9")) - (modules '((guix build utils))) - (snippet - '(begin - ;; Remove pre-compiled .pyc files from source. - (for-each delete-file-recursively - (find-files "." "__pycache__" #:directories? #t)) - (for-each delete-file (find-files "." "\\.pyc$")) - (for-each delete-file - (list "tables/_comp_bzip2.c" - "tables/_comp_lzo.c" - "tables/hdf5extension.c" - "tables/indexesextension.c" - "tables/linkextension.c" - "tables/lrucacheextension.c" - "tables/tableextension.c" - "tables/utilsextension.c")))))) + "1kr6y4qivqy462gva4bqym3x4alhxijfqjplxax3gh5r6k3pm82a")) + (snippet '(begin + (use-modules (guix build utils)) + (delete-file-recursively "c-blosc"))))) (build-system python-build-system) (arguments (list #:phases - ;; FIXME: python-build-system does not pass configure-flags to "build" - ;; or "check", so we must override the build and check phases. #~(modify-phases %standard-phases - (add-after 'unpack 'use-gcc - (lambda _ - (substitute* "setup.py" - (("lib_dirs = \\[\\]") - (string-append "lib_dirs = [" - "'" #$(this-package-input "hdf5") "/lib'," - "'" #$(this-package-input "bzip2") "/lib'," - "'" #$(this-package-input "c-blosc") "/lib'," - "]")) - (("^( +)compiler = new_compiler\\(\\)" line indent) - (string-append line - "\n" - indent - "compiler.set_executables(compiler='gcc'," - "compiler_so='gcc'," - "linker_exe='gcc'," - "linker_so='gcc -shared')"))))) (add-after 'unpack 'disable-tuning (lambda _ (substitute* "setup.py" (("cpu_flags = .*") "cpu_flags = ['sse2']\n")))) - (replace 'build - (lambda* (#:key inputs #:allow-other-keys) - (invoke "python" "setup.py" "build" - (string-append "--hdf5=" - (assoc-ref inputs "hdf5"))))) + (add-before 'build 'set-LD_LIBRARY_PATH + (lambda _ + ;; The setup.py build system makes use of ctypes.CDLL, which + ;; uses dlopen, which looks up library names from standard + ;; locations or LD_LIBRARY_PATH. + (setenv "LD_LIBRARY_PATH" (getenv "LIBRARY_PATH")))) (replace 'check - (lambda* (#:key inputs #:allow-other-keys) - (invoke "python" "setup.py" "check" - (string-append "--hdf5=" - (assoc-ref inputs "hdf5")))))))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "setup.py" "check"))))))) (propagated-inputs - (list python-numexpr python-numpy python-packaging - python-py-cpuinfo)) - (native-inputs - (list python-cython pkg-config)) - (inputs - (list c-blosc hdf5-1.10 bzip2 lzo zlib)) + (list python-blosc2 + python-numpy + python-numexpr + python-packaging + python-py-cpuinfo + python-typing-extensions)) + (native-inputs (list pkg-config python-cython)) + (inputs (list c-blosc c-blosc2 hdf5-1.10 bzip2 lzo zlib)) (home-page "https://www.pytables.org/") (synopsis "Hierarchical datasets for Python") (description "PyTables is a package for managing hierarchical datasets and |