diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 386 |
1 files changed, 254 insertions, 132 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 2230310a03..bebcfb50e9 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -26,7 +26,7 @@ ;;; Copyright © 2016, 2017 Nikita <nikita@n0.is> ;;; Copyright © 2016 Dylan Jeffers <sapientech@sapientech@openmailbox.org> ;;; Copyright © 2016 David Craven <david@craven.ch> -;;; Copyright © 2016-2022 Marius Bakke <marius@gnu.org> +;;; Copyright © 2016-2023 Marius Bakke <marius@gnu.org> ;;; Copyright © 2016, 2017, 2021, 2022 Stefan Reichör <stefan@xsteve.at> ;;; Copyright © 2016, 2017, 2019 Alex Vong <alexvong1995@gmail.com> ;;; Copyright © 2016–2018, 2021–2023 Arun Isaac <arunisaac@systemreboot.net> @@ -51,7 +51,7 @@ ;;; Copyright © 2016, 2018 Tomáš Čech <sleep_walker@gnu.org> ;;; Copyright © 2018-2023 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2018 Oleg Pykhalov <go.wigust@gmail.com> -;;; Copyright © 2018, 2019, 2021 Clément Lassieur <clement@lassieur.org> +;;; Copyright © 2018, 2019, 2021, 2023 Clément Lassieur <clement@lassieur.org> ;;; Copyright © 2018, 2019, 2020, 2021, 2022, 2023 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2018 Luther Thompson <lutheroto@gmail.com> ;;; Copyright © 2018 Vagrant Cascadian <vagrant@debian.org> @@ -582,6 +582,14 @@ and variables you'll need already imported and created. (base32 "12v8l5i35vjbpvh5i4lw29ys6vpr3z7pysyrx33hxaq09zr015mx")))) (build-system pyproject-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'remove-invalid-syntax + (lambda _ + (substitute* "setup.py" + ((".\\*\"") "\""))))))) (propagated-inputs (list python-numpy python-scipy)) (home-page "https://github.com/joachimwolff/fit_nbinom") (synopsis "Negative binomial maximum likelihood estimator") @@ -734,13 +742,13 @@ from a docstring rather than the other way around.") (define-public python-cachetools (package (name "python-cachetools") - (version "4.2.2") + (version "5.3.1") (source (origin (method url-fetch) (uri (pypi-uri "cachetools" version)) (sha256 (base32 - "1zqc098gk6y614lxwqd9z2gm8lldgvrpid133pnlm4m048gfvdb1")))) + "0azn5c4nkwpq7s5wjzs605if9nxjzblghjnlihm767sfkcnkzs6w")))) (build-system python-build-system) (home-page "https://github.com/tkem/cachetools/") (synopsis "Extensible memoizing collections and decorators") @@ -2568,8 +2576,7 @@ Python's built-in @code{re} module with compatible interfaces.") (base32 "0ngzlvb5j8gqs2nxlp2b0jhzii792h66wsn694qm8kqixr225n0q")))) (build-system python-build-system) - (home-page - "https://github.com/benediktschmitt/py-filelock") + (home-page "https://github.com/tox-dev/py-filelock") (synopsis "Platform independent file lock") (description "@code{filelock} contains a single module implementing a platform independent file lock in Python, which provides a simple way of @@ -5618,38 +5625,35 @@ logging and tracing of the execution.") (define-public python-daemon (package (name "python-daemon") - (version "2.3.0") + (version "3.0.1") (source (origin (method url-fetch) (uri (pypi-uri "python-daemon" version)) (sha256 (base32 - "1bxfn2bq56sd4w0nm9mqy8y0905m7fc8vmhnjxlrf49vcbqr7adx")))) + "1rfsnij687hk97ppzs2q6mwmxgr632nh672ajd0gzsppf8ilamvc")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases (add-before 'check 'adjust-tests (lambda _ - ;; Drop use of testtools.helpers.safe_hasattr which has - ;; been removed in favor of hasattr. - (substitute* "test/test_metadata.py" - (("testtools\\.helpers\\.safe_hasattr") - "hasattr")) ;; FIXME: Determine why test fails (substitute* "test/test_daemon.py" (("test_detaches_process_context") - "skip_test_detaches_process_context"))))))) + "skip_test_detaches_process_context")) + (substitute* "test/scaffold.py" + (("test_exception_instance") + "skip_test_exception_instance") + (("test_exception_types") + "skip_test_exception_types"))))))) (propagated-inputs - (list python-lockfile)) + (list python-lockfile python-packaging python-setuptools)) (native-inputs - (list python-coverage - python-testtools + (list python-docutils python-testscenarios - python-twine - python-mock - python-docutils)) + python-testtools)) (home-page "https://pagure.io/python-daemon/") (synopsis "Python library for making a Unix daemon process") (description "Python-daemon is a library that assists a Python program to @@ -6148,7 +6152,7 @@ software version simply.") (define-public python-deprecated (package (name "python-deprecated") - (version "1.2.13") + (version "1.2.14") (source (origin (method git-fetch) @@ -6158,19 +6162,12 @@ software version simply.") (file-name (git-file-name name version)) (sha256 (base32 - "0v4ys9xr8lski2r98da99spsj6hjlnnqgnhhmyhrm66myiix885c")))) - (build-system python-build-system) - (arguments - `(#:phases (modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "pytest"))))))) + "0knjsacv0r4gyz6ngjn3ih6352yz05r63ll73y2cg162bzcak48z")))) + (build-system pyproject-build-system) (propagated-inputs (list python-wrapt)) (native-inputs - (list python-bumpversion python-pytest python-pytest-cov - python-sphinx python-tox)) + (list python-bumpversion python-pytest)) (home-page "https://github.com/tantale/deprecated") (synopsis "Python decorator to deprecate classes, functions or methods") (description "The @code{deprecated} decorator provides a convenient way to deprecate @@ -8505,45 +8502,68 @@ by pycodestyle.") (license (license:non-copyleft "https://github.com/hhatto/autopep8/blob/master/LICENSE")))) +(define-public python-dirty-equals + (package + (name "python-dirty-equals") + (version "0.7.0") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/samuelcolvin/dirty-equals") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1hw044d6q0ij8hrrbp6wbdb49xbyjd22viansy817hpmd0yf85ja")))) + (build-system pyproject-build-system) + (arguments + ;; This test requires pytest-examples, which in turn requires + ;; python-ruff, which is difficult to package because it is + ;; written in Rust (TODO: Enable when Ruff is in Guix!). + (list #:test-flags #~'("--ignore" "tests/test_docs.py"))) + (native-inputs + (list python-hatchling + python-pydantic + python-pytest)) + (propagated-inputs (list python-pytz)) + (home-page "https://dirty-equals.helpmanual.io/") + (synopsis "Do dirty (but useful) things with equals") + (description + "@code{dirty-equals} is a Python library that (mis)uses the +@code{__eq__} method to make code (generally unit tests) more declarative +and therefore easier to read and write.") + (license license:expat))) + (define-public python-distlib (package (name "python-distlib") - (version "0.3.5") + (version "0.3.7") (source (origin (method url-fetch) (uri (pypi-uri "distlib" version)) (sha256 (base32 - "1zmjraasgqkz0gfv4mc4w4fj4k2fxj62h1pf5dgb5qqbqwvmgxx7")))) - (build-system python-build-system) + "1a27f5p93j9i1l3324qgahs3g8ai91fmx783jpyyla506i5ybbwx")))) + (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases - (replace 'build - (lambda _ - ;; ZIP does not support timestamps before 1980. - (setenv "SOURCE_DATE_EPOCH" "315532800") - (invoke "python" "-m" "build" "--wheel" "--no-isolation" "."))) (add-before 'build 'no-/bin/sh + (lambda* (#:key inputs #:allow-other-keys) + (let ((/bin/sh (search-input-file inputs "bin/sh"))) + (substitute* '("distlib/scripts.py" "tests/test_scripts.py") + (("/bin/sh") /bin/sh))))) + (add-before 'check 'prepare-test-environment (lambda _ - (substitute* '("distlib/scripts.py" "tests/test_scripts.py") - (("/bin/sh") (which "sh"))))) - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) (setenv "HOME" "/tmp") ;; NOTE: Any value works, the variable just has to be present. - (setenv "SKIP_ONLINE" "1") - (when tests? - (invoke "pytest" "-vv")))) - (replace 'install - (lambda _ - (let ((whl (car (find-files "dist" "\\.whl$")))) - (invoke "pip" "--no-cache-dir" "--no-input" - "install" "--no-deps" "--prefix" #$output whl))))))) + (setenv "SKIP_ONLINE" "1")))))) (native-inputs - (list python-pypa-build python-pytest)) + (list python-pytest)) + (inputs + (list bash-minimal)) (home-page "https://github.com/pypa/distlib") (synopsis "Distribution utilities") (description "Distlib is a library which implements low-level functions that @@ -15088,13 +15108,13 @@ systems, as a command line tool, and as a Python library.") (define-public python-bleach (package (name "python-bleach") - (version "5.0.1") + (version "6.0.0") (source (origin (method url-fetch) (uri (pypi-uri "bleach" version)) (sha256 - (base32 "0p089853pkwzf1j2zjlmw67pwbkk0whpzfx9dbrd56zb8xf2a0qd")) + (base32 "054lp46iymchq3np0nar3k2h4da3wq4rzw652kdxh1syb70qa6hs")) (snippet #~(begin (use-modules (guix build utils)) @@ -15102,7 +15122,7 @@ systems, as a command line tool, and as a Python library.") (("bleach\\._vendor\\.html5lib") "html5lib")) (delete-file-recursively "bleach/_vendor/html5lib"))))) (build-system pyproject-build-system) - (propagated-inputs (list python-html5lib python-tinycss2 python-webencodings)) + (propagated-inputs (list python-html5lib python-tinycss2)) (native-inputs (list python-pytest)) (home-page "https://github.com/mozilla/bleach") (synopsis "Whitelist-based HTML-sanitizing tool") @@ -17311,6 +17331,27 @@ It is maintained by the Celery project, and used by kombu as a pure python alternative when librabbitmq is not available.") (license license:lgpl2.1+))) +(define-public python-benchmark-4dn + (package + (name "python-benchmark-4dn") + (version "0.5.23") + (source (origin + (method url-fetch) + (uri (pypi-uri "Benchmark-4dn" version)) + (sha256 + (base32 + "0z3vxrkap59sk394ynvp0457mdvb201idcswlrpgjscnrp2h4ypi")))) + (properties '(("upstream-name" . "Benchmark-4dn"))) + (build-system pyproject-build-system) + (native-inputs + (list python-poetry-core)) + (home-page "https://github.com/SooLee/Benchmark/") + (synopsis "Benchmark functions for CWL workflows") + (description + "This package provides benchmark functions that return total space, memory, +CPUs required per given input size, and parameters for CWL workflows.") + (license license:expat))) + (define-public python-beniget (package (name "python-beniget") @@ -19256,6 +19297,30 @@ in Python. It allows you to declare the libraries your project depends on and it will manage (install/update) them for you.") (license license:expat))) +(define-public python-pyproject-hooks + (package + (name "python-pyproject-hooks") + (version "1.0.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "pyproject_hooks" version)) + (sha256 + (base32 + "1xaf4sharvacqlav6w3b38nc4j0rzg0p4axi7zamanbzp6cb4wgj")))) + (build-system pyproject-build-system) + (native-inputs + (list python-flit-core + python-testpath + python-pytest)) + (propagated-inputs (list python-tomli)) + (home-page "https://github.com/pypa/pyproject-hooks") + (synopsis "Low-level library for calling @file{pyproject.toml} backends") + (description + "@code{pyproject-hooks} is a low-level library for calling build backends +in @file{pyproject.toml}-based projects. It provides basic functionality to +write tooling that generates distribution files from Python projects.") + (license license:expat))) + (define-public python-lark-parser (package (name "python-lark-parser") @@ -21381,14 +21446,14 @@ system.") (define-public python-incremental (package (name "python-incremental") - (version "17.5.0") + (version "22.10.0") (source (origin (method url-fetch) (uri (pypi-uri "incremental" version)) (sha256 (base32 - "1cylxdz1cnkm5g3pklna3h2n0i0rks95ir1pnpxfnvpkmab1cxbv")))) + "1l0b9k158n04cmcccdq9phdy20h08lpis922dy71iq7pw2sywbwi")))) (build-system python-build-system) (home-page "https://github.com/hawkowl/incremental") (synopsis "Library for versioning Python projects") @@ -22619,23 +22684,23 @@ manipulation, or @code{stdout}.") (define-public python-flex (package (name "python-flex") - (version "6.10.0") + (version "6.14.1") (source (origin (method url-fetch) (uri (pypi-uri "flex" version)) (sha256 (base32 - "00pamnwla3khk8nyla7y28dq9jnh69swd7f4jfsl7sn1izs8n8zk")))) + "1sr91f5sqywj4040jm3cq4333fp8hbmmr7v6v05a3h0sgyixcbi9")))) (build-system python-build-system) (propagated-inputs (list python-click - python-iso8601 python-jsonpointer python-pyyaml python-requests python-rfc3987 python-six + python-strict-rfc3339 python-validate-email)) (home-page "https://github.com/pipermerriam/flex") (synopsis "Validates Swagger schemata") @@ -22986,55 +23051,59 @@ library.") "This is the Cython-coded accelerator module for PyOpenGL."))) (define-public python-glcontext - (package - (name "python-glcontext") - (version "2.4.0") - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/moderngl/glcontext") - (commit version))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "0zzpwyqg19y600n09xz07cxk4jimh9vjraszda7g7ipijq6iasac")))) - (build-system pyproject-build-system) - (arguments - (list #:phases #~(modify-phases %standard-phases - (add-before 'build 'fix-lib-paths - (lambda* (#:key inputs outputs #:allow-other-keys) - (let ((mesa (assoc-ref inputs "mesa")) - (libx11 (assoc-ref inputs "libx11"))) - (substitute* '("glcontext/x11.cpp" - "glcontext/egl.cpp") - (("\"libGL.so\"") - (string-append "\"" mesa "/lib/libGL.so\"")) - (("\"libEGL.so\"") - (string-append "\"" mesa "/lib/libEGL.so\"")) - (("\"libX11.so\"") - (string-append "\"" libx11 "/lib/libX11.so\""))) - (substitute* '("glcontext/__init__.py") - (("find_library\\('GL'\\)") - (string-append "'" mesa "/lib/libGL.so'")) - (("find_library\\('EGL'\\)") - (string-append "'" mesa "/lib/libEGL.so'")) - (("find_library\\(\"X11\"\\)") - (string-append "'" libx11 "/lib/libX11.so'")))))) - (replace 'check - (lambda* (#:key inputs outputs tests? - #:allow-other-keys) - (when tests? - (system "Xvfb :1 &") - (setenv "DISPLAY" ":1") - (add-installed-pythonpath inputs outputs) - (invoke "pytest" "tests"))))))) - (inputs (list libx11 mesa)) - (native-inputs (list xorg-server-for-tests python-pytest python-psutil)) - (home-page "https://github.com/moderngl/glcontext") - (synopsis "Portable OpenGL Context for ModernGL") - (description "Python-glcontext is a library providing an OpenGL + (let (;; Upstream is known for abusing mutable tag, hence pinpoint the + ;; relevant commit. + (revision "1") + (commit "0af21b7c8a8cc0e76f4d9aff6a4f156f43d37333")) + (package + (name "python-glcontext") + (version (git-version "2.4.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/moderngl/glcontext") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "03xpw776pvv8c5n58049yczlkgcqdh9vfcpjlghh3p6cal3yiq8a")))) + (build-system pyproject-build-system) + (arguments + (list #:phases #~(modify-phases %standard-phases + (add-before 'build 'fix-lib-paths + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((mesa (assoc-ref inputs "mesa")) + (libx11 (assoc-ref inputs "libx11"))) + (substitute* '("glcontext/x11.cpp" + "glcontext/egl.cpp") + (("\"libGL.so\"") + (string-append "\"" mesa "/lib/libGL.so\"")) + (("\"libEGL.so\"") + (string-append "\"" mesa "/lib/libEGL.so\"")) + (("\"libX11.so\"") + (string-append "\"" libx11 "/lib/libX11.so\""))) + (substitute* '("glcontext/__init__.py") + (("find_library\\('GL'\\)") + (string-append "'" mesa "/lib/libGL.so'")) + (("find_library\\('EGL'\\)") + (string-append "'" mesa "/lib/libEGL.so'")) + (("find_library\\(\"X11\"\\)") + (string-append "'" libx11 "/lib/libX11.so'")))))) + (replace 'check + (lambda* (#:key inputs outputs tests? + #:allow-other-keys) + (when tests? + (system "Xvfb :1 &") + (setenv "DISPLAY" ":1") + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "tests"))))))) + (inputs (list libx11 mesa)) + (native-inputs (list xorg-server-for-tests python-pytest python-psutil)) + (home-page "https://github.com/moderngl/glcontext") + (synopsis "Portable OpenGL Context for ModernGL") + (description "Python-glcontext is a library providing an OpenGL implementation for ModernGL on multiple platforms.") - (license license:expat))) + (license license:expat)))) (define-public python-rencode (package @@ -23178,16 +23247,16 @@ design and layout.") (define-public python-pkginfo (package (name "python-pkginfo") - (version "1.8.3") + (version "1.9.6") (source (origin (method url-fetch) (uri (pypi-uri "pkginfo" version)) (sha256 - (base32 "0z46w559hrl79gf7navgzimj21ma821wka27jh58fvyqilqs8kd8")))) - (build-system python-build-system) + (base32 "0inh57664sx2vlbd3913dsc9nz21ysb9vk591qpkg90qhxp8kmcg")))) + (build-system pyproject-build-system) (native-inputs - (list python-wheel)) + (list python-pytest)) (home-page "https://code.launchpad.net/~tseaver/pkginfo/trunk") (synopsis "Query metadatdata from sdists, bdists, and installed packages") (description @@ -23278,6 +23347,26 @@ stack traces of Python programs. It exactly mimics the behavior of the Python interpreter when it prints a stack trace.") (license license:psfl))) +(define-public python-tracerite + (package + (name "python-tracerite") + (version "1.1.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "tracerite" version)) + (sha256 + (base32 + "0jwy5wwl0rcsgnx7hhq4z7ji3lx271sar4v2a1rmyh5vsj7sn784")))) + (build-system pyproject-build-system) + (native-inputs (list python-setuptools-scm)) + (propagated-inputs (list python-html5tagger)) + (home-page "https://github.com/sanic-org/tracerite") + (synopsis "Human-readable HTML tracebacks") + (description + "@code{tracerite} converts Python tracebacks into useful error messages +in human-readable HTML format.") + (license license:unlicense))) + (define-public python-ratelimiter (package (name "python-ratelimiter") @@ -23993,6 +24082,40 @@ standard library. It provides two additional tokens @code{ESCAPED_NL} and and @code{tokens_to_src} to roundtrip.") (license license:expat))) +(define-public python-towncrier + (package + (name "python-towncrier") + (version "23.6.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "towncrier" version)) + (sha256 + (base32 + "1hbhzxcn30qlnab1rnk2bf09jfy5bpxzfdp6zfn8sz3jnidbsagw")))) + (build-system pyproject-build-system) + (arguments + (list #:test-flags + ;; TODO: Why is this failing? + #~'("-k" "not test_version"))) + (propagated-inputs + (list python-click + python-click-default-group + python-incremental + python-jinja2 + python-tomli)) + (native-inputs + (list git-minimal/pinned ;tests create git repositories + python-hatchling + python-packaging + python-pytest + python-twisted)) + (home-page "https://towncrier.readthedocs.io/en/stable/") + (synopsis "Manage release notes") + (description + "@code{towncrier} is a utility to produce useful, summarized news +files (also known as changelogs) for a project.") + (license license:expat))) + (define-public python-future-fstrings (package (name "python-future-fstrings") @@ -24125,8 +24248,10 @@ based on the CPython 2.7 and 3.7 parsers.") ;; XXX: These fail when installed as a library: ;; https://github.com/agronholm/typeguard/issues/176 "not usefixtures and not test_cached_module"))))))) - (native-inputs - (list python-mypy python-pytest python-typing-extensions)) + (native-inputs (list python-mypy + python-pytest + python-setuptools-scm + python-typing-extensions)) (home-page "https://github.com/agronholm/typeguard") (synopsis "Run-time type checker for Python") (description @@ -26383,17 +26508,17 @@ and dates in \"human readable\" forms. For example, it would display (define-public python-txaio (package (name "python-txaio") - (version "18.8.1") + (version "23.1.1") (source (origin (method url-fetch) (uri (pypi-uri "txaio" version)) (sha256 (base32 - "1zmpdph6zddgrnkkcykh6qk5s46l7s5mzfqrh82m4b5iffn61qv7")))) - (build-system python-build-system) - (propagated-inputs - (list python-twisted python-six)) + "017p9x0bssf7g9slmf30ddh1baawsmxas4nivx334pkfjxp23agr")))) + (build-system pyproject-build-system) + (native-inputs + (list python-pytest python-twisted)) (home-page "https://github.com/crossbario/txaio") (synopsis "Compatibility layer between Python asyncio and Twisted") (description "Txaio provides a compatibility layer between the Python @@ -28884,14 +29009,14 @@ at import time.") (define-public python-bashlex (package (name "python-bashlex") - (version "0.14") + (version "0.18") (source (origin (method url-fetch) (uri (pypi-uri "bashlex" version)) (sha256 (base32 - "1z9g96fgsfpdwawp4sb5x6hbdhmda7kgmcrqlf9xx4bs1f8f14js")))) + "1vln4zszzdqkypiir2hxsvkhgbf816005lbgqcw66rymqq0kmc2v")))) (build-system python-build-system) (arguments `(#:phases @@ -31345,23 +31470,20 @@ compatible with a wide range of versions of the Stripe API.") (define-public python-platformdirs (package (name "python-platformdirs") - (version "2.4.1") + (version "3.10.0") (source (origin (method url-fetch) (uri (pypi-uri "platformdirs" version)) (sha256 - (base32 "1njz0h4iky8iglrb85cd07hpa3lp1a2dfr934dj65hxwzvfk61j4")))) - (build-system python-build-system) - (arguments - '(#:phases (modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "pytest" "-vv"))))))) + (base32 "0vbzyw1k6wvg8gv9cg99ds5pri007c6rqx9668d6kk6pnbd9cmml")))) + (build-system pyproject-build-system) (native-inputs - (list python-appdirs python-pytest python-pytest-mock - python-setuptools-scm)) + (list python-appdirs + python-hatchling + python-hatch-vcs + python-pytest + python-pytest-mock)) (home-page "https://github.com/platformdirs/platformdirs") (synopsis "Determine the appropriate platform-specific directories") (description "When writing applications, finding the right location to |