diff options
Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 196 |
1 files changed, 97 insertions, 99 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index b14c4ff0f3..a2f1a9aed0 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -3404,6 +3404,7 @@ and is not compatible with JSON.") (build-system python-build-system) (arguments (list + #:tests? #f ;TODO: Circular dependency on pytest #:phases #~(modify-phases %standard-phases ;; XXX: PEP 517 manual build/install procedures copied from @@ -3423,7 +3424,7 @@ and is not compatible with JSON.") (lambda* (#:key tests? #:allow-other-keys) (when tests? (invoke "pytest" "-vv" "tests"))))))) - (native-inputs (list python-flit-scm python-pypa-build python-pytest)) + (native-inputs (list python-flit-scm python-pypa-build)) (home-page "https://github.com/agronholm/exceptiongroup") (synopsis "PEP 654 backport from Python 3.11") (description "This is a backport of the @code{BaseExceptionGroup} and @@ -3586,14 +3587,14 @@ port forwards using @acronym{UPnP, Universal Plug and Play}.") (define-public python-py (package (name "python-py") - (version "1.10.0") + (version "1.11.0") (source (origin (method url-fetch) (uri (pypi-uri "py" version)) (sha256 (base32 - "1lqvkqk3b440g9z82gqbzlzas84wrm6ir8kplzhzavmn2pd1pf11")))) + "06c7m7sfcn7587xd4s2bng8m6q1gsfd3j93afhplfjq74r0mrisi")))) (build-system python-build-system) (arguments ;; FIXME: "ImportError: 'test' module incorrectly imported from @@ -4148,6 +4149,18 @@ JavaScript-like message boxes. Types of dialog boxes include: (base32 "1ynkqpv2akldmvkll5vh5zhwj433s1d59iv0f76lygyak4silgwr")))) (build-system python-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'skip-broken-test + (lambda _ + ;; FIXME: This test fails for no good reason: + ;; https://github.com/pympler/pympler/issues/153 + (substitute* "test/muppy/test_tracker.py" + (("^([[:blank:]]+)def test_stracker_create_summary" all indent) + (string-append indent "@unittest.skipIf(True, \ +'Fails on Guix too for unknown reasons')\n" all)))))))) (synopsis "Measure, monitor and analyze memory behavior") (description "Pympler is a development tool to measure, monitor and analyze @@ -4373,14 +4386,14 @@ possible.") (define-public python-markupsafe (package (name "python-markupsafe") - (version "2.0.1") + (version "2.1.1") (source (origin (method url-fetch) (uri (pypi-uri "MarkupSafe" version)) (sha256 (base32 - "02k2ynmqvvd0z0gakkf8s4idyb606r7zgga41jrkhqmigy06fk2r")))) + "0jqxp5sfrc0byp6bk0gwdmildi4mck2gprp42afri3z4r5y1k4bz")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases @@ -6127,7 +6140,7 @@ writing C extensions for Python as easy as Python itself.") (define-public python-numpy (package (name "python-numpy") - (version "1.21.6") + (version "1.23.2") (source (origin (method url-fetch) @@ -6136,7 +6149,7 @@ writing C extensions for Python as easy as Python itself.") version "/numpy-" version ".tar.gz")) (sha256 (base32 - "0b0c5y35rd3mvwfk5is1d5ppfw9nl4d2rgx9xkwh1p0w394wdvyl")))) + "00bx3idjwhmzkdawg2dx1bp0316ig37jfx0dm82bvyv1hbj013dp")))) (build-system python-build-system) (arguments (list @@ -6158,7 +6171,10 @@ writing C extensions for Python as easy as Python itself.") [openblas] libraries = openblas library_dirs = ~a/lib -include_dirs = ~:*~a/include~%" #$(this-package-input "openblas")))))) +include_dirs = ~:*~a/include~%" + (dirname (dirname + (search-input-file + inputs "include/openblas_config.h")))))))) (add-before 'build 'fix-executable-paths (lambda* (#:key inputs #:allow-other-keys) ;; Make /gnu/store/...-bash-.../bin/sh the default shell, @@ -6182,7 +6198,11 @@ include_dirs = ~:*~a/include~%" #$(this-package-input "openblas")))))) ;; These tests may fail on 32-bit systems (see: ;; https://github.com/numpy/numpy/issues/18387). "not test_float_remainder_overflow " - "and not test_pareto" + "and not test_pareto " + ;; The 'test_rint_big_int' test fails on older + ;; x86_64 CPUs such as the Core 2 Duo (see: + ;; https://github.com/numpy/numpy/issues/22170). + "and not test_rint_big_int " ;; These tests seem to fail on machines without ;; an FPU is still under investigation upstream. ;; https://github.com/numpy/numpy/issues/20635 @@ -6192,9 +6212,10 @@ include_dirs = ~:*~a/include~%" #$(this-package-input "openblas")))))) '()))))))))) (native-inputs (list python-cython - python-hypothesis-next + python-hypothesis python-pytest python-pytest-xdist + python-typing-extensions gfortran)) (inputs (list bash openblas)) (home-page "https://numpy.org") @@ -6208,22 +6229,6 @@ capabilities.") '((upstream-name . "numpy"))) (license license:bsd-3))) -(define-public python-numpy-next - (package - (inherit python-numpy) - (name "python-numpy-next") - (version "1.22.3") - (source - (origin - (inherit (package-source python-numpy)) - (method url-fetch) - (uri (string-append - "https://github.com/numpy/numpy/releases/download/v" - version "/numpy-" version ".tar.gz")) - (sha256 - (base32 - "19dw91pqbqcniw2z57kiyqs1qp56g7kqy1bdyv664g8s62sc01m9")))))) - (define-public python-numpy-documentation (package (inherit python-numpy) @@ -6977,9 +6982,16 @@ tests = True~%" (assoc-ref inputs "tcl") (assoc-ref inputs "tk")))))) (invoke "pytest" "-n" (number->string (parallel-job-count)) "-m" "not network" "--pyargs" "matplotlib" - ;; The 'test_lazy_auto_backend_selection' fails - ;; because it would require an X server; skip it. - "-k" "not test_lazy_auto_backend_selection")))))))) + "-k" + (string-append + ;; The 'test_lazy_auto_backend_selection' fails + ;; because it would require an X server; skip it. + "not test_lazy_auto_backend_selection" + ;; test_getattr fails for the GTK backend because + ;; of an unexpected warning from Python 3.10 + ;; (via the gi module): + ;; https://gitlab.gnome.org/GNOME/pygobject/-/issues/494 + " and not test_getattr"))))))))) (propagated-inputs (list gobject-introspection python-cairocffi @@ -7462,31 +7474,43 @@ by pycodestyle.") (define-public python-distlib (package (name "python-distlib") - (version "0.3.1") + (version "0.3.5") (source (origin (method url-fetch) - (uri (pypi-uri "distlib" version ".zip")) + (uri (pypi-uri "distlib" version)) (sha256 (base32 - "1wdzv7fsjhrkhh1wfkarlhcwa8m00mgcpdsvknmf2qy8f9l13xpd")))) + "1zmjraasgqkz0gfv4mc4w4fj4k2fxj62h1pf5dgb5qqbqwvmgxx7")))) (build-system python-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (add-before 'build 'no-/bin/sh - (lambda _ - (substitute* '("distlib/scripts.py" "tests/test_scripts.py") - (("/bin/sh") (which "sh"))) - #t)) - (add-before 'check 'prepare-test-env - (lambda _ - (setenv "HOME" "/tmp") - ;; NOTE: Any value works, the variable just has to be present. - (setenv "SKIP_ONLINE" "1") - #t))))) - (native-inputs (list unzip)) - (home-page "https://bitbucket.org/pypa/distlib") + (list + #:phases + #~(modify-phases %standard-phases + (replace 'build + (lambda _ + ;; ZIP does not support timestamps before 1980. + (setenv "SOURCE_DATE_EPOCH" "315532800") + (invoke "python" "-m" "build" "--wheel" "--no-isolation" "."))) + (add-before 'build 'no-/bin/sh + (lambda _ + (substitute* '("distlib/scripts.py" "tests/test_scripts.py") + (("/bin/sh") (which "sh"))))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (setenv "HOME" "/tmp") + ;; NOTE: Any value works, the variable just has to be present. + (setenv "SKIP_ONLINE" "1") + (when tests? + (invoke "pytest" "-vv")))) + (replace 'install + (lambda _ + (let ((whl (car (find-files "dist" "\\.whl$")))) + (invoke "pip" "--no-cache-dir" "--no-input" + "install" "--no-deps" "--prefix" #$output whl))))))) + (native-inputs + (list python-pypa-build python-pytest)) + (home-page "https://github.com/pypa/distlib") (synopsis "Distribution utilities") (description "Distlib is a library which implements low-level functions that relate to packaging and distribution of Python software. It is intended to be @@ -11924,13 +11948,13 @@ number of lines in the contained files easily.") (hidden-package (package (name "python-fonttools") - (version "4.28.5") + (version "4.37.1") (source (origin (method url-fetch) (uri (pypi-uri "fonttools" version ".zip")) (sha256 (base32 - "1jhl5n3rfqq7fznvsh6r80n7ylap1a7ppq1040y8cflhyz80ap2l")))) + "1ryc1wca2v92wn24baryj5fr32lspl8rbsig32fnkxp1islf21j6")))) (build-system python-build-system) (native-inputs (list unzip)) @@ -11983,18 +12007,6 @@ from an XML-based format.") python-zopfli)) (properties (alist-delete 'hidden? (package-properties python-fonttools))))) -(define-public python-fonttools-next - (package - (inherit python-fonttools-full) - (version "4.37.1") - (source (origin - (inherit (package-source python-fonttools-full)) - (method url-fetch) - (uri (pypi-uri "fonttools" version ".zip")) - (sha256 - (base32 - "1ryc1wca2v92wn24baryj5fr32lspl8rbsig32fnkxp1islf21j6")))))) - (define-public python-ly (package (name "python-ly") @@ -12020,14 +12032,14 @@ provided that can be used to do various manipulations with LilyPond files.") (define-public python-appdirs (package (name "python-appdirs") - (version "1.4.3") + (version "1.4.4") (source (origin (method url-fetch) (uri (pypi-uri "appdirs" version)) (sha256 (base32 - "14id6wxi12lgyw0mg3bcfnf888ad07jz9yj46gfzhn186z8rcn4y")))) + "0hfzmwknxqhg20aj83fx80vna74xfimg8sk18wb85fmin9kh2pbx")))) (build-system python-build-system) (home-page "https://github.com/ActiveState/appdirs") (synopsis @@ -13936,7 +13948,8 @@ time.") (list python-ipykernel ;; Adding ipywidgets would create a cycle. ;;python-ipywidgets - ;;python-pyppeteer ;TODO: package me + ;; XXX: Disabled, not in guix. + ;;python-pyppeteer python-pytest python-pytest-xdist)) (propagated-inputs @@ -13962,14 +13975,14 @@ time.") texlive-caption texlive-enumitem texlive-fontspec - texlive-generic-iftex + texlive-iftex texlive-grffile texlive-hyperref - texlive-latex-fancyvrb + texlive-fancyvrb texlive-latex-float texlive-latex-geometry texlive-latex-jknapltx - texlive-latex-ms + texlive-ms texlive-latex-parskip texlive-latex-trimspaces texlive-latex-upquote @@ -15732,27 +15745,27 @@ of @acronym{REGEXPs, regular expressions}.") (define-public python-mako (package (name "python-mako") - (version "1.1.3") + (version "1.2.2") (source (origin (method url-fetch) (uri (pypi-uri "Mako" version)) (sha256 (base32 - "09ywrmhr6gdyfx6d5727wwjnz73i6rklqcb4c14m7sqc830wi5c1")))) + "0gqnv9py1dqp01jmf5zxp0vj2dbhq1l9zy55fai319iv6sdqc91p")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases (replace 'check (lambda* (#:key tests? #:allow-other-keys) (if tests? - (invoke "nosetests" "-v") + (invoke "pytest" "-vv") (format #t "test suite not run~%")) #t))))) (propagated-inputs (list python-markupsafe)) (native-inputs - (list python-mock python-nose)) + (list python-mock python-pytest)) (home-page "https://www.makotemplates.org/") (synopsis "Templating language for Python") (description "Mako is a templating language for Python that compiles @@ -16321,7 +16334,7 @@ import platform reason=\"Fails on 32 bit architectures\") " m)))))))) (build-system python-build-system) - (native-inputs (list python-pytest-6)) + (native-inputs (list python-pytest)) (home-page "https://software.clapper.org/munkres/") (synopsis "Implementation of the Munkres algorithm") (description "The Munkres module provides an implementation of the Munkres @@ -16663,9 +16676,7 @@ for Python inspired by modern web development.") (list which)) (inputs ;; python-magic needs to be able to find libmagic.so. - ;; Use a newer version because 5.39 returns bogus for some archives - ;; (notably Chromium .crx extensions), which breaks e.g. 'diffoscope'. - (list file-next)) + (list file)) (synopsis "File type identification using libmagic") (description "This module uses ctypes to access the libmagic file type @@ -17619,7 +17630,7 @@ strings require only one extra byte in addition to the strings themselves.") ;; build system and new Rust dependencies. "--ignore" "tests/test_preconf.py"))))))) (native-inputs - (list python-hypothesis-next + (list python-hypothesis python-immutables python-msgpack python-poetry-core @@ -22418,26 +22429,19 @@ with PEP 484 argument (and return) type annotations.") (define-public python-typing-extensions (package (name "python-typing-extensions") - (version "4.0.1") + (version "4.3.0") (source (origin - ;; The test script is missing from the PyPI archive. - (method git-fetch) - (uri (git-reference - (url "https://github.com/python/typing") - (commit version))) - (file-name (git-file-name name version)) + (method url-fetch) + (uri (pypi-uri "typing_extensions" version)) (sha256 (base32 - "0a35fh5wk9s538x0w3dz95y0avnhd2srzyv9s1a372711n8hdl4p")))) + "19n4l57qazwrbvxjrbxw2vvfyd0zbk8ivnwm4zmwfzzl69x6glp6")))) (build-system python-build-system) (arguments (list #:tests? #f ;requires Python's test module, not available in Guix #:phases #~(modify-phases %standard-phases - (add-after 'unpack 'enter-source-directory - (lambda _ - (chdir "typing_extensions"))) ;; XXX: PEP 517 manual build copied from python-isort. (replace 'build (lambda _ @@ -23911,25 +23915,19 @@ that is accessible to other projects developed in Cython.") (define-public python-sortedcontainers (package (name "python-sortedcontainers") - (version "2.1.0") + (version "2.4.0") (source (origin (method url-fetch) (uri (pypi-uri "sortedcontainers" version)) (sha256 (base32 - "0fm0w5id2yhqld95hg2m636vjgkz377rvgdfqaxc25vbylr9lklp")))) + "126vpywl7aly6zir033a9indgyficlzl68qls61nn2y3djhabji5")))) (build-system python-build-system) (arguments - ;; FIXME: Tests require many extra dependencies, and would introduce - ;; a circular dependency on hypothesis, which uses this package. + ;; TODO: Circular dependency on pytest. '(#:tests? #f)) - (propagated-inputs - `(("python-appdirs" ,python-appdirs) - ("python-distlib" ,python-distlib) - ("python-filelock" ,python-filelock) - ("python-six" ,python-six-bootstrap))) - (home-page "http://www.grantjenks.com/docs/sortedcontainers/") + (home-page "https://grantjenks.com/docs/sortedcontainers/") (synopsis "Sorted List, Sorted Dict, Sorted Set") (description "This package provides a sorted collections library, written in @@ -27704,7 +27702,7 @@ By default it uses the open Python vulnerability database Safety DB.") (native-inputs `(("texlive" ,(texlive-updmap.cfg (list texlive-amsfonts texlive-fonts-ec - texlive-generic-iftex + texlive-iftex texlive-hyperref texlive-oberdiek texlive-lm @@ -29195,7 +29193,7 @@ symbolic expressions in pure Python using the technique of logical unification." "0w9giq196wps7mbm47c4shdzs5yvwvqajqzkim2p92i51sm5qgvm")))) (build-system python-build-system) (native-inputs - (list python-pytest-6 python-toml)) + (list python-pytest python-toml)) (propagated-inputs (list python-logical-unification)) (home-page "https://github.com/pythological/python-cons") |