diff options
Diffstat (limited to 'gnu/packages/sphinx.scm')
| -rw-r--r-- | gnu/packages/sphinx.scm | 153 |
1 files changed, 129 insertions, 24 deletions
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm index 79d4d6e1b4..27415c4431 100644 --- a/gnu/packages/sphinx.scm +++ b/gnu/packages/sphinx.scm @@ -7,7 +7,7 @@ ;;; Copyright © 2017 Danny Milosavljevic <dannym+a@scratchpost.org> ;;; Copyright © 2017, 2018, 2020 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2017 Frederick M. Muriithi <fredmanglis@gmail.com> -;;; Copyright © 2017 Christopher Allan Webber <cwebber@dustycloud.org> +;;; Copyright © 2017 Christine Lemmer-Webber <cwebber@dustycloud.org> ;;; Copyright © 2017 Julien Lepiller <julien@lepiller.eu> ;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2019, 2021 Nicolas Goaziou <mail@nicolasgoaziou.fr> @@ -15,6 +15,8 @@ ;;; Copyright © 2019 Brett Gilio <brettg@gnu.org> ;;; Copyright © 2020 Giacomo Leidi <goodoldpaul@autistici.org> ;;; Copyright © 2021 Eric Bavier <bavier@posteo.net> +;;; Copyright © 2021 Vinicius Monego <monego@posteo.net> +;;; Copyright © 2021 Hugo Lecomte <hugo.lecomte@inria.fr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -47,7 +49,9 @@ #:use-module (gnu packages python-crypto) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) - #:use-module (gnu packages time)) + #:use-module (gnu packages time) + #:use-module (gnu packages python-science) + #:use-module (gnu packages graph)) (define-public python-sphinx (package @@ -409,34 +413,46 @@ integrate Sphinx documents in web templates and to handle searches.") (define-public python-sphinx-gallery (package (name "python-sphinx-gallery") - (version "0.1.13") - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/sphinx-gallery/sphinx-gallery") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "14nbqh9krx2l2y2ylbln6l6w8iak3wac1lngvaf278y1cx7685kg")))) + (version "0.9.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "sphinx-gallery" version)) + (sha256 + (base32 "14zyhr7m92nafhhnzfvnbgkf5m91krd9mjyi24zn59bjq6zyr8hl")))) (build-system python-build-system) (arguments - ;; FIXME: Tests attempt to download <https://docs.python.org/3/objects.inv>, - ;; <https://docs.scipy.org/doc/numpy/objects.inv>, and - ;; <https://matplotlib.org/objects.inv>. - `(#:tests? #f)) + `(#:phases + (modify-phases %standard-phases + (add-before 'check 'writable-files-for-tests + (lambda _ + (for-each make-file-writable (find-files ".")))) + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest" "--pyargs" "sphinx_gallery" "-k" + (string-append + ;; These tests require online data. + "not test_embed_code_links_get_data" + " and not test_run_sphinx" + ;; AssertionError. + " and not test_embed_links_and_styles")))))))) (native-inputs - `(("python-pytest-runner" ,python-pytest-runner))) - (home-page "https://sphinx-gallery.github.io/") + `(("python-joblib" ,python-joblib) + ("python-matplotlib" ,python-matplotlib) + ("python-numpy" ,python-numpy) + ("python-pillow" ,python-pillow) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-sphinx" ,python-sphinx))) + (home-page "https://sphinx-gallery.github.io/stable/index.html") (synopsis "Generate an examples gallery automatically") (description "@code{sphinx_gallery} is a Sphinx extension that builds an HTML version from any set of Python scripts and puts it into an examples gallery.") (license license:bsd-3))) -(define-public python2-sphinx-gallery - (package-with-python2 python-sphinx-gallery)) - (define-public python-sphinx-me (package (name "python-sphinx-me") @@ -606,18 +622,17 @@ and several other projects.") (define-public python-breathe (package (name "python-breathe") - (version "4.22.1") + (version "4.30.0") (source (origin (method url-fetch) (uri (pypi-uri "breathe" version)) (sha256 (base32 - "0snk538xv60z4vfhl3f7v5g658za7257hddkg07cknkn33k6cjvf")))) + "055h95fkdld7s49878fqjx1nri1drj1czc184vrb7i60mf2yqg9n")))) (build-system python-build-system) (propagated-inputs `(("python-docutils" ,python-docutils) - ("python-six" ,python-six) ("python-sphinx" ,python-sphinx))) (home-page "https://github.com/michaeljones/breathe") (synopsis "ReStructuredText and Sphinx bridge to Doxygen") @@ -771,3 +786,93 @@ executed during the Sphinx build process.") (synopsis "Sphinx cross-reference tool") (description "Sphinx objects.inv inspection/manipulation tool.") (license license:expat))) + +(define-public python-jupyter-sphinx + (package + (name "python-jupyter-sphinx") + (version "0.3.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "jupyter_sphinx" version)) + (sha256 + (base32 + "1wma60787m2451nn4bc4jw7bzqksplplb84wqxm34iaw70499z1p")))) + (build-system python-build-system) + (propagated-inputs + `(("python-ipython" ,python-ipython) + ("python-ipywidgets" ,python-ipywidgets) + ("python-nbconvert" ,python-nbconvert) + ("python-nbformat" ,python-nbformat))) + (native-inputs + `(("python-sphinx" ,python-sphinx))) + (home-page "https://github.com/jupyter/jupyter-sphinx/") + (synopsis "Jupyter Sphinx Extensions") + (description + "Jupyter-sphinx is a Sphinx extension that executes embedded code in a +Jupyter kernel, and embeds outputs of that code in the document. It has +support for rich output such as images, LaTeX math and even JavaScript +widgets, and supports thebelab for live code execution with minimal effort.") + (license license:bsd-3))) + +(define-public python-sphinxcontrib-autoprogram + (package + (name "python-sphinxcontrib-autoprogram") + (version "0.1.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "sphinxcontrib-autoprogram" version)) + (sha256 + (base32 + "06hzim0d3fd72kf30fyjbbm5n8ibyybic0kf62gm79qp50zjwr5w")))) + (build-system python-build-system) + (propagated-inputs + `(("python-six" ,python-six))) + (native-inputs + `(("python-sphinx" ,python-sphinx))) + (home-page "https://github.com/sphinx-contrib/autoprogram") + (synopsis "Documenting CLI programs") + (description + "This Sphinx extension, @code{sphinxcontrib.autoprogram}, provides an +automated way to document command-line programs. It scans +@code{argparse.ArgumentParser} object, and then expands it into a set of +@code{.. program::} and @code{.. option::} directives.") + (license license:bsd-2))) + +(define-public python-pydata-sphinx-theme + (package + (name "python-pydata-sphinx-theme") + (version "0.6.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pydata-sphinx-theme" version)) + (sha256 + (base32 + "055bh3hyh72pafiylvgpsjlk18wm15gg4azc5rjlsww5z475iq1j")))) + (build-system python-build-system) + (propagated-inputs + `(("python-beautifulsoup4" ,python-beautifulsoup4))) + (native-inputs + `(("python-beautifulsoup4" ,python-beautifulsoup4) + ("python-docutils" ,python-docutils) + ("python-jupyter-sphinx" ,python-jupyter-sphinx) + ("python-numpy" ,python-numpy) + ("python-numpydoc" ,python-numpydoc) + ("python-pandas" ,python-pandas) + ("python-plotly" ,python-plotly) + ("python-pytest" ,python-pytest) + ("python-pytest-regressions" + ,python-pytest-regressions) + ("python-recommonmark" ,python-recommonmark) + ("python-sphinx" ,python-sphinx) + ("python-xarray" ,python-xarray) + ("python-docutils" ,python-docutils) + ("python-sphinx" ,python-sphinx))) + (home-page "https://github.com/pydata/pydata-sphinx-theme") + (synopsis "Bootstrap-based Sphinx theme") + (description + "This package provides a Bootstrap-based Sphinx theme from the PyData +community.") + (license license:bsd-3))) |