diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 108 |
1 files changed, 58 insertions, 50 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index e1cdd6b850..2f471420c2 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -210,7 +210,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") (define r-with-tests (package (name "r-with-tests") - (version "4.2.3") + (version "4.3.0") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" @@ -218,7 +218,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") version ".tar.gz")) (sha256 (base32 - "0x702sargcw27gy3nc0bwpfayi2lzak6c0ixq3i19qrvsjkakr2m")))) + "02d6lrb0008wr9ikcas0h5xrk7i074ddwzzp4083czgjdj5w9p25")))) (build-system gnu-build-system) (arguments `(#:disallowed-references (,tzdata-for-tests) @@ -327,10 +327,11 @@ as.POSIXct(if (\"\" != Sys.getenv(\"SOURCE_DATE_EPOCH\")) {\ ;; Set default pager to "cat", because otherwise it is "false", ;; making "help()" print nothing at all. (lambda _ (setenv "PAGER" "cat"))) - (add-before 'check 'set-timezone + (add-before 'configure 'set-timezone ;; Some tests require the timezone to be set. However, the ;; timezone may not just be "UTC", or else a brittle regression ;; test in reg-tests-1d will fail. + ;; We also need TZ during the configure step. (lambda* (#:key inputs #:allow-other-keys) (setenv "TZ" "UTC+1") (setenv "TZDIR" @@ -511,14 +512,14 @@ D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.") (define-public r-mass (package (name "r-mass") - (version "7.3-58.3") + (version "7.3-60") (source (origin (method url-fetch) (uri (cran-uri "MASS" version)) (sha256 (base32 - "1bkrbhm230nm4px1rw93mxhigpvivinj22f7r4mx786whaamkra2")))) + "1hphf8m1zny4582rvfnl262ydf3f2w0kayxj2b8n855hx87l20mq")))) (properties `((upstream-name . "MASS"))) (build-system r-build-system) (home-page "https://www.stats.ox.ac.uk/pub/MASS4/") @@ -532,14 +533,14 @@ Applied Statistics with S\" (4th edition, 2002) by Venables and Ripley.") (define-public r-class (package (name "r-class") - (version "7.3-21") + (version "7.3-22") (source (origin (method url-fetch) (uri (cran-uri "class" version)) (sha256 (base32 - "1pydmsy4glvdbvm8ci76br69qhlfgjq8irwm4jk63nnjli54068c")))) + "0p6i10jk8mb85bkx4lvixw85lsmgnk4cizcdw33zqhrqx5j436dn")))) (build-system r-build-system) (propagated-inputs (list r-mass)) @@ -615,14 +616,14 @@ for reading and writing some dBase files.") (define-public r-kernsmooth (package (name "r-kernsmooth") - (version "2.23-20") + (version "2.23-21") (source (origin (method url-fetch) (uri (cran-uri "KernSmooth" version)) (sha256 (base32 - "0fgclmzk3ksjsh3j47jqzm3jhqrwn12rkp7f84yr6wr43q2pbsr0")))) + "12qsy90cmcg8pdvcpasdskh82x9d83xdznibi9b7z1hkw8ccnqrx")))) (properties `((upstream-name . "KernSmooth"))) (build-system r-build-system) (native-inputs @@ -725,14 +726,14 @@ distributions beyond the exponential family.") (define-public r-nnet (package (name "r-nnet") - (version "7.3-18") + (version "7.3-19") (source (origin (method url-fetch) (uri (cran-uri "nnet" version)) (sha256 (base32 - "1l73v6l9ma0vsg4za3c6i3d6yjj7bpdmakbmrzp7205hbkxyp6nj")))) + "1rrc70shnrnn7gyq5fhnmw841a06d8y0vp5pp8xv1lvhj931y959")))) (build-system r-build-system) (home-page "https://www.stats.ox.ac.uk/pub/MASS4/") (synopsis "Feed-forward neural networks and multinomial log-linear models") @@ -1437,13 +1438,13 @@ for template use among CRAN packages.") (define-public r-evaluate (package (name "r-evaluate") - (version "0.20") + (version "0.21") (source (origin (method url-fetch) (uri (cran-uri "evaluate" version)) (sha256 (base32 - "1w7zi9cvbn3751hprfpb7waia4faqn8xa8q9jrc0nq03avldkx9m")))) + "1f92kjlds2nckmsjxx07xm2pikpc9x6hcvc0538xf5w9xsfcjy1i")))) (build-system r-build-system) (home-page "https://github.com/hadley/evaluate") (synopsis "Parsing and evaluation tools for R") @@ -1612,13 +1613,13 @@ from knitr Rmarkdown.") (define-public r-microbenchmark (package (name "r-microbenchmark") - (version "1.4.9") + (version "1.4.10") (source (origin (method url-fetch) (uri (cran-uri "microbenchmark" version)) (sha256 (base32 - "1lpzpffnjiwnxxl0jhrvyj88fvxqksnpccbpq953xwqf6ypjqga4")))) + "10dlp4295jb5l7lhz80f4mkz3jccv02v277z666wx3bhfaz43k04")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/microbenchmark/") (synopsis "Accurate timing functions for R") @@ -1710,13 +1711,13 @@ R packages that praise their users.") (define-public r-testthat (package (name "r-testthat") - (version "3.1.7") + (version "3.1.8") (source (origin (method url-fetch) (uri (cran-uri "testthat" version)) (sha256 (base32 - "1awfcpabn6f7rdi7lvdj6hzm3gq6qzn38rls6m36q72874bnpn0s")))) + "09y8gdzssb41m8j2ph12g6nlwxm02075aiyc5bb6lsqgvnpzi4rl")))) (build-system r-build-system) (propagated-inputs (list r-brio @@ -1771,13 +1772,13 @@ defined in different packages.") (define-public r-rlang (package (name "r-rlang") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "rlang" version)) (sha256 (base32 - "0nrk9634l05bsn9kl9zf0ylqvm9swlzic8fggkyhbp4y3kcmk67q")))) + "16fsibxbh4fy62x6fw358qbniw085qs1wjyr75n22xv9g6kwjpjy")))) (build-system r-build-system) (home-page "http://rlang.tidyverse.org") (synopsis "Functions for base types, core R and Tidyverse features") @@ -1818,13 +1819,13 @@ and printing capabilities than traditional data frames.") (define-public r-dplyr (package (name "r-dplyr") - (version "1.1.1") + (version "1.1.2") (source (origin (method url-fetch) (uri (cran-uri "dplyr" version)) (sha256 (base32 - "1xxvspk1nyns39dp2fqvxbvvnkkz4rcgmhrcrznr3h1qpayj9p6z")))) + "1qwn00ai7k6km0z9kl6aa1qjkfz8j3prlgdfxr1pr5s47a5c6862")))) (build-system r-build-system) (propagated-inputs (list r-cli @@ -1959,13 +1960,13 @@ and density estimation.") (define-public r-chron (package (name "r-chron") - (version "2.3-60") + (version "2.3-61") (source (origin (method url-fetch) (uri (cran-uri "chron" version)) (sha256 (base32 - "1vlifh316q76g4015126am158i702mi88xjpzj3ylv2vqp77a1hf")))) + "16rvqkb7c969795d1z1ypb2cfly70zp24qs8ndsq0hx04mv9b5m0")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/chron") (synopsis "Chronological R objects which can handle dates and times") @@ -2171,14 +2172,14 @@ and environmental data in the framework of Euclidean exploratory methods.") (define-public r-xml2 (package (name "r-xml2") - (version "1.3.3") + (version "1.3.4") (source (origin (method url-fetch) (uri (cran-uri "xml2" version)) (sha256 (base32 - "138w7hb487al9cbahmnk5rhi23k8a9g7nk7s5dyxd3k1646rqknb")))) + "0c1h7fvkrcqcgnky6hhp9ysaraxhqdqjvsdlq0450fk4ishv22rl")))) (build-system r-build-system) (inputs (list libxml2 zlib)) @@ -2282,14 +2283,14 @@ R version.") (define-public r-checkmate (package (name "r-checkmate") - (version "2.1.0") + (version "2.2.0") (source (origin (method url-fetch) (uri (cran-uri "checkmate" version)) (sha256 (base32 - "1ii11lypfz8qwswaiagaxnfq6wqkg3cq4j7k9q40sdd0cd8xv15p")))) + "064i6l0n4w4jncpnk5wnj6sxak0jirdz757iirglcxg8ayq19v4n")))) (build-system r-build-system) (propagated-inputs (list r-backports)) @@ -2522,13 +2523,13 @@ integers.") (define-public r-httr (package (name "r-httr") - (version "1.4.5") + (version "1.4.6") (source (origin (method url-fetch) (uri (cran-uri "httr" version)) (sha256 (base32 - "0v3gyzgwv6v3rmpr5sfks8ygp1inmrddsiyamfcz039bi1zsqfzr")))) + "1cipxhsss77n2psik755y1s7dkyqhrs0yjch8cmqswr3xz5qcvcd")))) (build-system r-build-system) (propagated-inputs (list r-curl r-jsonlite r-openssl r-mime r-r6)) @@ -3834,14 +3835,14 @@ path-wise fashion.") (define-public r-pkgmaker (package (name "r-pkgmaker") - (version "0.32.8") + (version "0.32.10") (source (origin (method url-fetch) (uri (cran-uri "pkgmaker" version)) (sha256 (base32 - "0i8prn63miajx7wlil5dchasqnjp054gwp0h7x6586q55j6mgwqg")))) + "0cr95vmsb4gkl917wg4wwq8jihvwasdg18qzhk2cq224lrrh8awp")))) (build-system r-build-system) (propagated-inputs (list r-assertthat @@ -4006,6 +4007,13 @@ message passing.") (list r-bh r-bigmemory-sri r-rcpp r-uuid)) (inputs (list `(,util-linux "lib"))) ;for -luuid + (supported-systems + (fold delete + %supported-systems + ;; Build fails on these systems + '("armhf-linux" + "aarch64-linux" + "powerpc64le-linux"))) (home-page "http://www.bigmemory.org") (synopsis "Manage large matrices with shared memory or memory-mapped files") (description "This package provides methods to create, store, access, and @@ -4194,13 +4202,13 @@ memory usage.") (define-public r-viridis (package (name "r-viridis") - (version "0.6.2") + (version "0.6.3") (source (origin (method url-fetch) (uri (cran-uri "viridis" version)) (sha256 (base32 - "048kwhbhd49g86cq11fl7vm0whwhjl5gs9xjn040lwcjv78qrdb9")))) + "1z0zgwf3xlwxagphcavkxm09i2pbqmdxil8c39h1jwlr8nbvfq2a")))) (build-system r-build-system) (propagated-inputs (list r-ggplot2 r-gridextra r-viridislite)) @@ -4221,14 +4229,14 @@ most common form of color blindness.") (define-public r-viridislite (package (name "r-viridislite") - (version "0.4.1") + (version "0.4.2") (source (origin (method url-fetch) (uri (cran-uri "viridisLite" version)) (sha256 (base32 - "15zaf2c7kzjf3i0g7y8w6jlgfkpprqj2zl346y5imz75r8fdp5m8")))) + "18g1rk24kr47jl01r70vvni2146fl9xxpjcvjp6d5k6y64fi2gw9")))) (properties `((upstream-name . "viridisLite"))) (build-system r-build-system) (home-page "https://github.com/sjmgarnier/viridisLite") @@ -4662,13 +4670,13 @@ package instead.") (define-public r-hmisc (package (name "r-hmisc") - (version "5.0-1") + (version "5.1-0") (source (origin (method url-fetch) (uri (cran-uri "Hmisc" version)) (sha256 - (base32 "0ngsm05ngzchy4l8a6fww3m2qqz8m04rcbl1zg7va30mia7hyffv")))) + (base32 "0y10hnglid78gnaapmdy3ihjih4i2kvaycn2c60r2wr43nv7wl0q")))) (properties `((upstream-name . "Hmisc"))) (build-system r-build-system) (native-inputs @@ -4769,14 +4777,14 @@ existing packages provide.") (define-public r-sfsmisc (package (name "r-sfsmisc") - (version "1.1-14") + (version "1.1-15") (source (origin (method url-fetch) (uri (cran-uri "sfsmisc" version)) (sha256 (base32 - "1vxkziprndrzc5sdz36i20qdqfcyw8m87vpxm3jccf6pqbc45adw")))) + "1rl1gh79mkpg1ms9mrfyd6yrvvlxap01yx11mhngd1x2hg7l5yja")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/sfsmisc") (synopsis "Utilities from \"Seminar fuer Statistik\" ETH Zurich") @@ -4810,14 +4818,14 @@ tests for whether a value is missing, empty or contains only @code{NA} and (define-public r-gdata (package (name "r-gdata") - (version "2.18.0.1") + (version "2.19.0") (source (origin (method url-fetch) (uri (cran-uri "gdata" version)) (sha256 (base32 - "1n9jw136kk5ld27qvny7cx2s8l34jdgmzlx40x62mmcqjddksbsy")))) + "1lv3cz990f7m2bfcf62fjm6wz6zd2ycrci06b7mfd0xmcn3bwifi")))) (build-system r-build-system) (inputs (list perl)) @@ -5010,16 +5018,16 @@ representation of R code.") (define-public r-ggbeeswarm (package (name "r-ggbeeswarm") - (version "0.7.1") + (version "0.7.2") (source (origin (method url-fetch) (uri (cran-uri "ggbeeswarm" version)) (sha256 (base32 - "14mc00i107rww3al5q3rrqmd1v0ck06jipfhzqi23g29a4rm05gl")))) + "1rcw54isai05np4fj19vcxx2vcxq7y2nm3az9m8xwbc9pdjs4z7x")))) (build-system r-build-system) (propagated-inputs - (list r-beeswarm r-ggplot2 r-lifecycle r-vipor)) + (list r-beeswarm r-cli r-ggplot2 r-lifecycle r-vipor)) (home-page "https://github.com/eclarke/ggbeeswarm") (synopsis "Categorical scatter (violin point) plots") (description @@ -5372,14 +5380,14 @@ data for species delimitation, nearest neighbor based noise detection.") (define-public r-deoptimr (package (name "r-deoptimr") - (version "1.0-12") + (version "1.0-13") (source (origin (method url-fetch) (uri (cran-uri "DEoptimR" version)) (sha256 (base32 - "0y9xc6lkadk3h1j22q7vnykm1xyhlbn24lkjqn8sdsmw660gjdk1")))) + "1wpqg659vpcd6cgy4sa9qygf0s0w44n46yma8990awkgnbxjmfxa")))) (properties `((upstream-name . "DEoptimR"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/DEoptimR") @@ -5762,14 +5770,14 @@ algorithms.") (define-public r-lme4 (package (name "r-lme4") - (version "1.1-32") + (version "1.1-33") (source (origin (method url-fetch) (uri (cran-uri "lme4" version)) (sha256 (base32 - "0j03qn6l8zxlwnrkr1vyrgfcczf1wkrmczyvf3ncd5ad72jcnijy")))) + "0409nhvdkkh571gdi9w21z6szkgnmj4sssw3988idh5wgknsamnr")))) (build-system r-build-system) (propagated-inputs (list r-boot @@ -6901,13 +6909,13 @@ designs, one-way designs, general ANOVA designs, and linear regression.") (define-public r-norm (package (name "r-norm") - (version "1.0-10.0") + (version "1.0-11.0") (source (origin (method url-fetch) (uri (cran-uri "norm" version)) (sha256 (base32 - "1iqcsa7mj9ahnkbsri0cf2wlhh2bv86vwsh3iwihh42cywd7k123")))) + "0bj0d518c5cld1h2ymm7sjhd6b3v2h3w8rcn9b5mki1fg20lx2nd")))) (build-system r-build-system) (native-inputs (list gfortran)) |