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-rw-r--r--gnu/packages/statistics.scm91
1 files changed, 24 insertions, 67 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 1e7e235136..dfd26abd5a 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -184,7 +184,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.")
(define r-with-tests
(package
(name "r-with-tests")
- (version "4.0.1")
+ (version "4.0.2")
(source (origin
(method url-fetch)
(uri (string-append "mirror://cran/src/base/R-"
@@ -192,7 +192,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.")
version ".tar.gz"))
(sha256
(base32
- "0ckgpihkih4b44rx48hpg9p6bv0w67j5z3qc8s4giy6qv2j29zlm"))))
+ "0xdy3dy2bzdiba8z94hjykyra8si8a5q15s0bri7c26scjrymg6k"))))
(build-system gnu-build-system)
(arguments
`(#:disallowed-references (,tzdata-for-tests)
@@ -702,14 +702,14 @@ analysis.")
(define-public r-survival
(package
(name "r-survival")
- (version "3.1-12")
+ (version "3.2-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "survival" version))
(sha256
(base32
- "07zj3gpwncw89hbiwjb6ih9axv5zwdqnbgz9yw9xzws6nrpdcbmn"))))
+ "07h76r2y23w889257krlijcw4n4d7ssx92x7i5qb1xyv5gyvl3rx"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)))
@@ -1097,13 +1097,13 @@ using just two functions: melt and dcast (or acast).")
(define-public r-ggplot2
(package
(name "r-ggplot2")
- (version "3.3.1")
+ (version "3.3.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggplot2" version))
(sha256
- (base32 "04wvswadlry2n9gnfqlpdqsav1wllnlzb5c9w9ydynllv4vkwfm0"))))
+ (base32 "0wsib5qpzn4d0w1ss3x158xmrawkms8vvsfvr3mh40pvd8g2ibad"))))
(build-system r-build-system)
(propagated-inputs
`(("r-digest" ,r-digest)
@@ -1410,13 +1410,13 @@ emitter (http://pyyaml.org/wiki/LibYAML) for R.")
(define-public r-knitr
(package
(name "r-knitr")
- (version "1.28")
+ (version "1.29")
(source (origin
(method url-fetch)
(uri (cran-uri "knitr" version))
(sha256
(base32
- "0ai382fmpz25qrhdgchs3vph2cdvyd73xyryg4jby5fp67d03vh5"))))
+ "00rcwiq8znmk5h4qgrwd0639xyb38iwbjykqjk3disz3kvrcvbn1"))))
(build-system r-build-system)
(propagated-inputs
`(("r-evaluate" ,r-evaluate)
@@ -2094,14 +2094,14 @@ limited to R.")
(define-public r-backports
(package
(name "r-backports")
- (version "1.1.7")
+ (version "1.1.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "backports" version))
(sha256
(base32
- "02vfkqm1kw54y1qax8cmiyg2nk6bmh8j87fc3j22k7852s3y4xxj"))))
+ "1irc9c23hwliwkky1b3hi0dkzwalhb7zgjj08562ff1k8dqv4qf6"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/backports")
(synopsis "Reimplementations of functions introduced since R 3.0.0")
@@ -2683,13 +2683,13 @@ certain criterion, e.g., it contains a certain regular file.")
(define-public r-rmarkdown
(package
(name "r-rmarkdown")
- (version "2.2")
+ (version "2.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "rmarkdown" version))
(sha256
- (base32 "196r3hq1gcr6iamxllq4k40cb109b16ng24ky0q68bwrll80q1mh"))))
+ (base32 "0vdjq4kcyxkr2m27588kk6yi5g53symjshj4jz4n0j18wz53shji"))))
(properties `((upstream-name . "rmarkdown")))
(build-system r-build-system)
(propagated-inputs
@@ -2994,14 +2994,14 @@ statements.")
(define-public r-segmented
(package
(name "r-segmented")
- (version "1.1-0")
+ (version "1.2-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "segmented" version))
(sha256
(base32
- "06cxdrqgnpk5fvbam5i7qa4n71wry0yvlj0jpwbxf267mvpx10fh"))))
+ "0r83p36l6m5sy4lxfjbfajn4gcqb0wv9zh7arny02s6c7fb4756y"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/segmented")
(synopsis "Regression models with breakpoints estimation")
@@ -3154,13 +3154,13 @@ using the multicore functionality of the parallel package.")
(define-public r-dt
(package
(name "r-dt")
- (version "0.13")
+ (version "0.14")
(source (origin
(method url-fetch)
(uri (cran-uri "DT" version))
(sha256
(base32
- "1db35mi4m4q3kha4vhvh693bv04y7h9pdawhsx8f234qjvz7783r"))))
+ "0xhinw7wasrai5wfswp3r48qfv7ppdfd9jc7py2rp63dn0bnvbab"))))
(properties
`((upstream-name . "DT")))
(build-system r-build-system)
@@ -3233,13 +3233,13 @@ analysis of large sparse or dense matrices.")
(define-public r-glmnet
(package
(name "r-glmnet")
- (version "4.0")
+ (version "4.0-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "glmnet" version))
(sha256
- (base32 "1vy8v6filhw9sflk8wwnbgz2mryg70ml4iq4y1c34dlwxczcbzv8"))))
+ (base32 "0qdswxvdwjcnw0by15p9yfzw8laq4f2j0ivpma6q8c5zywldpxxc"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)
@@ -3247,7 +3247,8 @@ analysis of large sparse or dense matrices.")
(propagated-inputs
`(("r-foreach" ,r-foreach)
("r-matrix" ,r-matrix)
- ("r-shape" ,r-shape)))
+ ("r-shape" ,r-shape)
+ ("r-survival" ,r-survival)))
(home-page "https://www.jstatsoft.org/article/view/v033i01")
(synopsis "Lasso and elastic-net regularized generalized linear models")
(description
@@ -4280,26 +4281,6 @@ plot can be quickly adjusted using a flexible parameter dispatching
mechanism.")
(license license:gpl2+)))
-(define-public r-zoo
- (package
- (name "r-zoo")
- (version "1.8-8")
- (source (origin
- (method url-fetch)
- (uri (cran-uri "zoo" version))
- (sha256
- (base32
- "1rrw431jwaxd9xljp73f15rhcxvwc0xlyrmr0ghi5fj7a03c932f"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-lattice" ,r-lattice)))
- (home-page "http://zoo.R-Forge.R-project.org/")
- (synopsis "S3 infrastructure for regular and irregular time series")
- (description "This package contains an S3 class with methods for totally
-ordered indexed observations. It is particularly aimed at irregular time
-series of numeric vectors/matrices and factors.")
- (license license:gpl2+)))
-
(define-public r-ztable
(package
(name "r-ztable")
@@ -4860,14 +4841,14 @@ estimation and robust multivariate analysis with high breakdown point.")
(define-public r-fit-models
(package
(name "r-fit-models")
- (version "0.5-14")
+ (version "0.63")
(source
(origin
(method url-fetch)
(uri (cran-uri "fit.models" version))
(sha256
(base32
- "0vjbzmx0ambm6yzidb4vbgmhclwzwv2iz2cwl54ccdkvx4cx3fck"))))
+ "0wrrfsgngsfrqnm247f0h6g01807i7lbf5chpyx7hkfdfmm4xbxn"))))
(properties `((upstream-name . "fit.models")))
(build-system r-build-system)
(propagated-inputs
@@ -4937,14 +4918,14 @@ of the points.")
(define-public r-fpc
(package
(name "r-fpc")
- (version "2.2-5")
+ (version "2.2-6")
(source
(origin
(method url-fetch)
(uri (cran-uri "fpc" version))
(sha256
(base32
- "10504hzivbn89ip0cd5bcxd36ivbgin1lw1xhyh3xfckcm25v1a5"))))
+ "0lpn951gy58039gk2wh8nsw6qss8m3flkawv55yq3l6373ly79if"))))
(build-system r-build-system)
(propagated-inputs
`(("r-class" ,r-class)
@@ -5637,30 +5618,6 @@ tools.")
parameters.")
(license license:gpl3))))
-(define-public r-directlabels
- (package
- (name "r-directlabels")
- (version "2020.1.31")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "directlabels" version))
- (sha256
- (base32
- "08s1gnwp4bn8xahwjaq0f1qzhwh2dvybzhq3z7xyzn8cnyzmis6c"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-quadprog" ,r-quadprog)))
- (home-page "http://directlabels.r-forge.r-project.org/")
- (synopsis "Direct labels for multicolor plots")
- (description
- "This package provides an extensible framework for automatically placing
-direct labels onto multicolor plots. Label positions are described using
-positioning methods that can be re-used across several different plots. There
-are heuristics for examining @code{trellis} and @code{ggplot} objects and
-inferring an appropriate positioning method.")
- (license license:gpl3)))
-
(define-public r-catterplots
(let ((commit "ae17cd5e49ddda4ecfe0eba8a4c21df8c88e72c4")
(revision "3"))