diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 76 |
1 files changed, 39 insertions, 37 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index f28e60362c..dc620b13a1 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -211,7 +211,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") (define r-with-tests (package (name "r-with-tests") - (version "4.3.0") + (version "4.3.1") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" @@ -219,7 +219,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") version ".tar.gz")) (sha256 (base32 - "02d6lrb0008wr9ikcas0h5xrk7i074ddwzzp4083czgjdj5w9p25")))) + "16dswjcymzr2mj1vjwqdyjaa9d4isa1p6c9viihnyg02y4jbzl4d")))) (build-system gnu-build-system) (arguments `(#:disallowed-references (,tzdata-for-tests) @@ -244,7 +244,15 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") (substitute* "src/scripts/R.sh.in" (("uname") uname-bin)) (substitute* "src/unix/sys-std.c" - (("rm -Rf ") (string-append rm-bin " -Rf ")))))) + (("rm -Rf ") (string-append rm-bin " -Rf "))) + (substitute* "src/library/parallel/R/detectCores.R" + (("'grep") + (string-append "'" + (search-input-file inputs "/bin/grep"))) + (("\\| wc -l") + (string-append "| " + (search-input-file inputs "/bin/wc") + " -l")))))) (add-after 'unpack 'patch-tests (lambda _ ;; This is needed because R is run during the check phase and @@ -380,20 +388,11 @@ as.POSIXct(if (\"\" != Sys.getenv(\"SOURCE_DATE_EPOCH\")) {\ perl pkg-config texinfo ; for building HTML manuals - (texlive-updmap.cfg (list texlive-ae - texlive-inconsolata - texlive-fonts-ec - texlive-grfext - texlive-amsfonts - texlive-latex-base - texlive-fancyvrb - texlive-graphics - texlive-hyperref - texlive-oberdiek - texlive-tools - texlive-latex-upquote - texlive-url - texlive-latex-xkeyval)) + (texlive-updmap.cfg + (list texlive-fancyvrb + texlive-inconsolata + texlive-upquote + texlive-xkeyval)) tzdata-for-tests xz)) (inputs @@ -401,6 +400,7 @@ as.POSIXct(if (\"\" != Sys.getenv(\"SOURCE_DATE_EPOCH\")) {\ curl openblas gfortran + grep icu4c libjpeg-turbo libpng @@ -711,13 +711,13 @@ nonlinear mixed-effects models.") (define-public r-mgcv (package (name "r-mgcv") - (version "1.8-42") + (version "1.9-0") (source (origin (method url-fetch) (uri (cran-uri "mgcv" version)) (sha256 - (base32 "1ixn5pgc3qriy5nfd264dz7l126xg4k4zidgkqag41mdcj5w6zq8")))) + (base32 "0w1v0hdswb332xz3br1fcgacib7ddr4hb96cmlycxcpqq5w01cdj")))) (build-system r-build-system) (propagated-inputs (list r-matrix r-nlme)) @@ -2129,7 +2129,7 @@ machine learning, computer vision, and high-dimensional statistics.") (define-public python-arviz (package (name "python-arviz") - (version "0.15.1") + (version "0.16.1") (source (origin (method git-fetch) ; PyPI misses some test files (uri (git-reference @@ -2138,7 +2138,7 @@ machine learning, computer vision, and high-dimensional statistics.") (file-name (git-file-name name version)) (sha256 (base32 - "0nqr4v927r9kc50z7rwlk2m8nw3dnnmmwmwcfijzd93gbg53wc4f")))) + "19phaqbpls82300z7ghicrldjxyjq4ilmmwsmd9zkl8c7ld5cb4j")))) (build-system pyproject-build-system) (arguments ;; FIXME: matplotlib tests fail because of the "--save" test flag. @@ -2177,7 +2177,7 @@ comparison and diagnostics.") (define-public python-pymc (package (name "python-pymc") - (version "5.5.0") + (version "5.6.1") (source (origin (method git-fetch) ; no tests in PyPI (uri (git-reference @@ -2186,7 +2186,7 @@ comparison and diagnostics.") (file-name (git-file-name name version)) (sha256 (base32 - "077xigv3lfcn9fqc14rsnam4v95fmqk2wpzfrgj08vg8m7f69wdj")))) + "0in5lw55camvgd6b4hiw4gr11bdy96jc74z1gvsd0xj7cfxvc043")))) (build-system pyproject-build-system) (arguments (list #:tests? #f ; tests are too computationally intensive @@ -2670,14 +2670,17 @@ collation, and NAMESPACE files.") (define-public r-openssl (package (name "r-openssl") - (version "2.0.6") + (version "2.1.0") (source (origin (method url-fetch) (uri (cran-uri "openssl" version)) (sha256 (base32 - "1wxkq613054ic0w58a41fyr7bp7f939vhsgj6hbhs3r72qm07wvp")))) + "0fg5avcrjjn7sv6rzbp19y6jwjjr77xpldxg4xssp5s1p832wnk2")))) + (properties + `((upstream-name . "openssl") + (updater-extra-inputs . ("openssl")))) (build-system r-build-system) (arguments (list @@ -2689,7 +2692,7 @@ collation, and NAMESPACE files.") (("PKG_LIBS=\"\\$\\{PKG_LIBS_VERSIONED\\}\"") "PKG_LIBS=\"${PKG_LIBS}\""))))))) (inputs - (list openssl)) + (list openssl zlib)) (native-inputs (list pkg-config r-knitr)) (propagated-inputs @@ -4825,9 +4828,8 @@ from within R.") (list hevea perl swig - ;;texlive-aeguill ;;FIXME: package me! - texlive-base - texlive-jknappen)) + (texlive-updmap.cfg + (list texlive-aeguill texlive-jknapltx)))) (propagated-inputs (list r-lattice r-matrix)) @@ -5583,14 +5585,14 @@ data for species delimitation, nearest neighbor based noise detection.") (define-public r-deoptimr (package (name "r-deoptimr") - (version "1.0-14") + (version "1.1-0") (source (origin (method url-fetch) (uri (cran-uri "DEoptimR" version)) (sha256 (base32 - "0d2ij0ncwjp9kh5bv7nvha8p1g73y620pw62c1q5chvjpjvxshfp")))) + "15nnix9k5x6hixfk1pvmkq1bmi3nbw4mf16ng5b7b8qakj8h8h8n")))) (properties `((upstream-name . "DEoptimR"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/DEoptimR") @@ -5892,14 +5894,14 @@ metrics for evaluating models.") (define-public r-matrixmodels (package (name "r-matrixmodels") - (version "0.5-1") + (version "0.5-2") (source (origin (method url-fetch) (uri (cran-uri "MatrixModels" version)) (sha256 (base32 - "1a9ywhv1yklfcp0jgirkih3ib5scs61hkscmyddwfh5blpgmpi9z")))) + "0ap3mfzb2psjwlksfjzs2ycl5598bllwzx5hfmf9db4yjsydn1hw")))) (properties `((upstream-name . "MatrixModels"))) (build-system r-build-system) (propagated-inputs @@ -6871,14 +6873,14 @@ mediation and estimating power.") (define-public r-clubsandwich (package (name "r-clubsandwich") - (version "0.5.8") + (version "0.5.9") (source (origin (method url-fetch) (uri (cran-uri "clubSandwich" version)) (sha256 (base32 - "1y894n35l4lzqm15ifxjnpnh95dldsfivv4098571yqf1z4a253q")))) + "0r43qyff1v986snvnynsj02kp50npyi1qln1gwgpl3n1syngzcn8")))) (properties `((upstream-name . "clubSandwich"))) (build-system r-build-system) (propagated-inputs @@ -6909,14 +6911,14 @@ Methods are provided for a variety of fitted models, including @code{lm()} and (define-public r-puniform (package (name "r-puniform") - (version "0.2.5") + (version "0.2.6") (source (origin (method url-fetch) (uri (cran-uri "puniform" version)) (sha256 (base32 - "1zw8qbqnyhyvzrw6izrqgnmbawcqg2jdhcb8lxs1rd8y7cn4v4wj")))) + "1rfd7d14an28hba1rhldxn418qagnlk8ngvimb86i3774ll9blvi")))) (properties `((upstream-name . "puniform"))) (build-system r-build-system) (propagated-inputs |