diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 122 |
1 files changed, 63 insertions, 59 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index aa2094ecdb..557b63aeae 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1346,22 +1346,19 @@ and to generate base64 encoded string from raster matrix.") (define-public r-svglite (package (name "r-svglite") - (version "2.1.1") + (version "2.1.2") (source (origin (method url-fetch) (uri (cran-uri "svglite" version)) (sha256 - (base32 - "0mmcipyqq4hs8fnb7301gdhl9ic4m80f1fp2x6z5vc61xrlh2w28")))) + (base32 "0c00djvlnf4qr30srh3xjnx1valqq8grm5ib0q4485z8gphn7hf2")))) + (properties `((upstream-name . "svglite"))) (build-system r-build-system) - (inputs - (list libpng zlib)) - (propagated-inputs - (list r-cpp11 r-systemfonts)) - (native-inputs - (list r-knitr)) - (home-page "https://github.com/hadley/svglite") + (inputs (list libpng zlib)) + (propagated-inputs (list r-cpp11 r-systemfonts)) + (native-inputs (list r-knitr)) + (home-page "https://svglite.r-lib.org") (synopsis "SVG graphics device") (description "@code{svglite} is a graphics device that produces clean @@ -1724,13 +1721,13 @@ R packages that praise their users.") (define-public r-testthat (package (name "r-testthat") - (version "3.1.10") + (version "3.2.0") (source (origin (method url-fetch) (uri (cran-uri "testthat" version)) (sha256 (base32 - "1xh80rxv0whz618kpwzlzg0jg2vhm4073nyx03hd4xpg0ifhhd9i")))) + "03k58p8kd7vddx7rlcyi28sy48bh3w4xy4c7wi190l7yjlrfa2sv")))) (build-system r-build-system) (propagated-inputs (list r-brio @@ -5729,14 +5726,14 @@ data for species delimitation, nearest neighbor based noise detection.") (define-public r-deoptimr (package (name "r-deoptimr") - (version "1.1-2") + (version "1.1-3") (source (origin (method url-fetch) (uri (cran-uri "DEoptimR" version)) (sha256 (base32 - "0swycypiyxkvhn1438q0wysz2c4ky6zjw89w62dggbciqwk8xdbq")))) + "1526g3fzii8kcy29gy6gjvaw4k9cxxidq8bh7m4j485h0wdsdn4d")))) (properties `((upstream-name . "DEoptimR"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/DEoptimR") @@ -6530,65 +6527,72 @@ levels (including collapsing rare levels into other, \"anonymizing\", and manually \"recoding\").") (license license:gpl3))) -(define-public r-tgstat - (let ((changeset "4f8e60c03598f49aff6f5beeab40f2b995377e9f") +(define-public r-tgconfig + (let ((commit "15cf199436ae0b2ac0006b2ca7f0aeeb5c9d4445") (revision "1")) (package - (name "r-tgstat") - (version (string-append "1.0.2-" revision "." (string-take changeset 7))) + (name "r-tgconfig") + (version (git-version "0.1.2" revision commit)) (source (origin - (method hg-fetch) - (uri (hg-reference - (url "https://bitbucket.org/tanaylab/tgstat") - (changeset changeset))) - (file-name (string-append name "-" version "-checkout")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/tanaylab/tgconfig") + (commit commit))) + (file-name (git-file-name name version)) (sha256 - (base32 - "0ilkkyximy77zbncm91kdfqbxf0qyndg16pd3q3p6a3xc9qcmxvn")))) + (base32 "159m8hhbk9ip2fdy6zsa96v0173q1awcrzdz2rr2796awfaxjgx1")))) + (properties `((upstream-name . "tgconfig"))) (build-system r-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'fix-isnan - (lambda _ - (substitute* "src/tgstat.h" - (("#define isnan ::isnan") - "#define isnan std::isnan")) - #t))))) - (propagated-inputs - (list r-rcpp)) - (home-page "https://bitbucket.org/tanaylab/tgstat/") - (synopsis "Tanay's group statistical utilities") + (propagated-inputs (list r-yaml)) + (home-page "https://github.com/tanaylab/tgconfig") + (synopsis "Infrastructure for managing package parameters") (description - "The goal of tgstat is to provide fast and efficient statistical -tools.") - (license license:gpl2)))) + "This is a package to provide infrastructure for managing package parameters. +Parameters are easy to get in relevant functions within a package, +and rrror is thrown if a parameter is missing. Developers are able +to register parameters and set their default value in a config file +that is part of the package in YAML format, and users are able to +override parameters using their own YAML. Users get an exception +when trying to override a parameter that was not registered, and +can load multiple parameters to the current environment.") + (license license:gpl3+)))) -(define-public r-tgconfig - (let ((changeset "1e02c7614713bd0866c46f0c679a058f8c6d627e") +(define-public r-tgutil + (let ((commit "0e4a2e84e5cf1f74bc66df0a3d8eac89633fd7b1") (revision "1")) (package - (name "r-tgconfig") - (version (string-append "0.0.0.9000-" revision "." (string-take changeset 7))) + (name "r-tgutil") + (version (git-version "0.1.15" revision commit)) (source (origin - (method hg-fetch) - (uri (hg-reference - (url "https://bitbucket.org/tanaylab/tgconfig") - (changeset changeset))) - (file-name (string-append name "-" version "-checkout")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/tanaylab/tgutil") + (commit commit))) + (file-name (git-file-name name version)) (sha256 - (base32 - "0xy6c7s7mn1yx191154bwbv1bl424bnvc80syqpl1vdl28ba46rj")))) + (base32 "0pmacpzhrigprlpl8b5j4xz7l110ifw98017xwk569dghbf8zrq1")))) + (properties `((upstream-name . "tgutil"))) (build-system r-build-system) - (propagated-inputs - (list r-yaml)) - (home-page "https://bitbucket.org/tanaylab/tgconfig/") - (synopsis "Infrastructure for managing package parameters") - (description - "The goal of tgconfig is to provide infrastructure for managing package -parameters.") + (propagated-inputs (list r-broom + r-cowplot + r-data-table + r-dplyr + r-ggplot2 + r-glue + r-magrittr + r-matrix + r-matrixstats + r-qlcmatrix + r-readr + r-rlang + r-scales + r-tibble + r-tidyr)) + (home-page "https://github.com/tanaylab/tgutil") + (synopsis "Simple utility functions for Tanay lab code") + (description "Shared utility functions for multiple Tanay lab packages.") (license license:gpl3)))) (define-public r-catterplots |