diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/astronomy.scm | 15 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 4 | ||||
| -rw-r--r-- | gnu/packages/image-viewers.scm | 15 | ||||
| -rw-r--r-- | gnu/packages/python-science.scm | 14 | ||||
| -rw-r--r-- | gnu/packages/python-xyz.scm | 30 | ||||
| -rw-r--r-- | gnu/packages/wxwidgets.scm | 4 |
6 files changed, 57 insertions, 25 deletions
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 5ab59035b4..1d56773c35 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -9034,14 +9034,19 @@ analyze spectrogram data.") (version "1.3.2") (source (origin - (method url-fetch) - (uri (pypi-uri "suntime" version)) + (method git-fetch) ; no tests data in the PyPI tarball + (uri (git-reference + (url "https://github.com/SatAgro/suntime") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 - (base32 "1kyd1r6zcs0jmh5gq74adrnb1h7dfr1mzjq4k4vbngfiga8gfd28")))) + (base32 "145jqwnl8frg49981xcli1l13h73m40gkbnpwa88lhva03j7y1k2")))) (build-system pyproject-build-system) + (arguments + (list #:test-flags #~(list "tests.py"))) (native-inputs - (list python-setuptools - python-wheel)) + (list python-pytest + python-setuptools)) (propagated-inputs (list python-dateutil)) (home-page "https://github.com/SatAgro/suntime") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 26847d6edc..e8fb0e2d5a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4991,11 +4991,11 @@ long-read sequencing data.") (list lapack openblas)) (native-inputs (list python-cython - python-setuptools python-pybiomart - python-wheel)) + python-setuptools)) (arguments (list + #:tests? #f ;XXX: tests hangs during collection #:phases '(modify-phases %standard-phases ;; Numba needs a writable dir to cache functions. diff --git a/gnu/packages/image-viewers.scm b/gnu/packages/image-viewers.scm index e4157e0b07..6d292fa9c2 100644 --- a/gnu/packages/image-viewers.scm +++ b/gnu/packages/image-viewers.scm @@ -783,7 +783,7 @@ For PDF support, install the @emph{mupdf} package.") (define-public qpageview (package (name "qpageview") - (version "0.6.2") + (version "1.0.1") (source (origin (method git-fetch) (uri (git-reference @@ -792,15 +792,16 @@ For PDF support, install the @emph{mupdf} package.") (file-name (git-file-name name version)) (sha256 (base32 - "0xdhiglzqxyp05blp66l52nbzbpn10hmdm2idhncz6pf7qw16lsw")))) - (build-system python-build-system) + "0h3b7qhmjk1bz7ws7jwa9012wh2yvmk45j21ciyzj28mcjx9ygz4")))) + (build-system pyproject-build-system) (home-page "https://qpageview.org/") - (synopsis "Page based document viewer widget for Qt5/PyQt5") + (synopsis "Page based document viewer widget for Qt/PyQt") (inputs - (list python-pyqt qtbase-5)) + (list python-pyqt-6 qtbase)) + (native-inputs (list python-hatchling)) (description - "@code{qpageview} provides a page based document viewer widget for Qt5 -and PyQt5. It has a flexible architecture potentionally supporting many + "@code{qpageview} provides a page based document viewer widget for Qt +and PyQt. It has a flexible architecture potentionally supporting many formats. Currently, it supports SVG documents, images, and, using the Poppler-Qt5 binding, PDF documents.") (license license:gpl3+))) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 3283c66c56..d068b3c0b9 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -389,16 +389,22 @@ supersedes the RTED algorithm for computing the tree edit distance.") (define-public python-asap3 (package (name "python-asap3") - (version "3.13.7") + (version "3.13.9") (source (origin (method url-fetch) (uri (pypi-uri "asap3" version)) (sha256 - (base32 "0z6m9ybiy4fdnzlkfkvyxich18iwlwlgj1jd99fylyfwf8l160am")))) + (base32 "0r4sx93v2ck4m9ykzj9zaar2l9wk4nrb3d3rlik1nqimk6pnnbm2")))) (build-system pyproject-build-system) - (propagated-inputs (list python-ase)) - (native-inputs (list python-setuptools python-wheel which)) + (arguments + (list #:tests? #f)) ;TODO: collecting ... ERROR: Wrong command line. + (native-inputs + (list python-setuptools + which)) ;for build + (propagated-inputs + (list python-ase + python-numpy)) (home-page "https://wiki.fysik.dtu.dk/asap") (synopsis "ASAP - classical potentials for Molecular Dynamics with ASE.") (description "This package provides accelerated simulations and potentials diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 90fa4dc868..fbd4ae3c2f 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -39294,16 +39294,34 @@ Currently, Linux is the only platform supported by this library.") (define-public python-dbus-fast (package (name "python-dbus-fast") - (version "2.30.2") + (version "2.44.3") (source (origin - (method url-fetch) - (uri (pypi-uri "dbus_fast" version)) + (method git-fetch) ;No tests in PyPI package. + (uri (git-reference + (url "https://github.com/Bluetooth-Devices/dbus-fast") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 - (base32 "1cx71lbw716smpr4vsc9d421v45s36hcqj2z95nl3wm2yhan6ac7")))) + (base32 "12f1f25ny7fd59s55gw3vr6ymdqgd51zzpbc1nkqfbmb166d1536")))) (build-system pyproject-build-system) - (native-inputs (list python-cython python-poetry-core python-setuptools - python-wheel)) + (arguments + (list + #:test-flags + '(list + ;; These tests need pytest_codspeed. + "--ignore-glob=tests/benchmarks/test_*marshall.py" + ;; These tests all fail with: + ;; dbus_fast.errors.InvalidAddressError: DBUS_SESSION_BUS_ADDRESS not + ;; set and could not get DISPLAY environment variable to get bus address + "-m" "not asyncio"))) + (native-inputs (list python-cython + python-poetry-core + python-setuptools + python-pytest + python-pytest-cov + python-pytest-asyncio + python-covdefaults)) (home-page "https://github.com/bluetooth-devices/dbus-fast") (synopsis "Faster version of dbus-next") (description "This package provides a faster version of dbus-next.") diff --git a/gnu/packages/wxwidgets.scm b/gnu/packages/wxwidgets.scm index 3f5fcbb07c..d7fb7543d8 100644 --- a/gnu/packages/wxwidgets.scm +++ b/gnu/packages/wxwidgets.scm @@ -302,6 +302,8 @@ and many other languages.") (outputs '("out" "debug")) (arguments (list + #:test-backend #~'custom + #:test-flags #~(list "build.py" "-v" "test") #:modules '((guix build pyproject-build-system) (guix build utils) (ice-9 ftw) @@ -355,7 +357,7 @@ except ImportError: (inputs (list gtk+ wxwidgets)) (native-inputs - (list pkg-config python-setuptools python-waf python-wheel)) + (list pkg-config python-setuptools python-waf)) (propagated-inputs (list python-numpy python-pillow python-six)) (home-page "https://wxpython.org/") |