diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 620439f144..079fd467cc 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2548,6 +2548,41 @@ RNA-Seq, the MISO model uses Bayesian inference to compute the probability that a read originated from a particular isoform.") (license license:gpl2))) +(define-public muscle + (package + (name "muscle") + (version "3.8.1551") + (source (origin + (method url-fetch/tarbomb) + (file-name (string-append name "-" version)) + (uri (string-append + "http://www.drive5.com/muscle/muscle_src_" + version ".tar.gz")) + (sha256 + (base32 + "0bj8kj7sdizy3987zx6w7axihk40fk8rn76mpbqqjcnd64i5a367")))) + (build-system gnu-build-system) + (arguments + `(#:make-flags (list "LDLIBS = -lm") + #:phases + (modify-phases %standard-phases + (delete 'configure) + (replace 'check + ;; There are no tests, so just test if it runs. + (lambda _ (zero? (system* "./muscle" "-version")))) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin"))) + (install-file "muscle" bin))))))) + (home-page "http://www.drive5.com/muscle") + (synopsis "Multiple sequence alignment program") + (description + "MUSCLE aims to be a fast and accurate multiple sequence alignment +program for nucleotide and protein sequences.") + ;; License information found in 'muscle -h' and usage.cpp. + (license license:public-domain))) + (define-public orfm (package (name "orfm") |