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2024-05-08gnu: r-org-mm-eg-db: Update to 3.19.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): Update to 3.19.1. Change-Id: I3ae90e3d60941caf901d49c91662f38900588a27
2024-05-08gnu: r-org-hs-eg-db: Update to 3.19.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): Update to 3.19.1. Change-Id: Ib120639d743ba4abd0a129f968bd09a3f9c62775
2024-05-08gnu: r-org-dr-eg-db: Update to 3.19.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.19.1. Change-Id: Ib5d87389f017f2a4ed106ecaef01f82a689ad46e
2024-05-08gnu: r-org-dm-eg-db: Update to 3.19.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): Update to 3.19.1. Change-Id: I3c19de819fe694d9af11c4263132338340fccc47
2024-05-08gnu: r-org-ce-eg-db: Update to 3.19.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): Update to 3.19.1. Change-Id: If5ae28c7f68194c7e6dc1b849932417ec1679ec9
2024-05-08gnu: r-go-db: Update to 3.19.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-go-db): Update to 3.19.1. Change-Id: I894831796ac3121795d76df059b10680e9545ba0
2024-05-08gnu: r-genomeinfodbdata: Update to 1.2.12.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodbdata): Update to 1.2.12. Change-Id: I185d52161ec45de7d03fedeb51f2a28864df9903
2024-05-08gnu: r-reactome-db: Update to 1.88.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reactome-db): Update to 1.88.0. Change-Id: I80b58a45e8265e82e7a84d8d428fc4339fd926a7
2024-05-08gnu: r-org-sc-sgd-db: Update to 3.19.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-sc-sgd-db): Update to 3.19.1. Change-Id: Iee6d57797bb3dde152ce0e22a3ed25c30c039a09
2024-05-08gnu: r-org-bt-eg-db: Update to 3.19.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-bt-eg-db): Update to 3.19.1. Change-Id: If37dc4be3287f0729b2e2d4aecef6745700b429c
2024-05-08gnu: r-org-eck12-eg-db: Update to 3.19.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): Update to 3.19.1. Change-Id: I0f3a84abd0dff114231c341e776b542a7b047176
2024-05-08gnu: r-mafh5-gnomad-v3-1-2-grch38: Update to 3.15.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mafh5-gnomad-v3-1-2-grch38): Update to 3.15.1. Change-Id: I6b83a3701c2a4282864bf648677b258c1315598c
2024-05-08gnu: Add r-ucsc-utils.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ucsc-utils): New variable. Change-Id: I02eebaa69a57b8bbd97b38ae7d62799971f70d45
2024-05-08gnu: r-biocpkgtools: Update to 1.22.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.22.0. Change-Id: I4afb2530597279d9f2b6c01fc7d76c95c88aa629
2024-05-08gnu: r-debcam: Update to 1.22.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.22.0. Change-Id: Iec96dd28f8adc4d8c070f2e50098a02a4582ec33
2024-05-08gnu: Add r-txdbmaker.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-txdbmaker): New variable. Change-Id: I2e236b42117525a48917604ea14396ff661b72f7
2024-05-08gnu: Add r-pwalign.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-pwalign): New variable. Change-Id: I6a12f48c5de948292af7c6888b12e849e1f42db7
2024-05-08gnu: Add r-psmatch.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-psmatch): New variable. Change-Id: I7b3071424563b713912016301f551ce00aceddea
2024-05-08gnu: Add r-gypsum.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gypsum): New variable. Change-Id: Id3bdf044d9a885605b1b2b2ceba32398da6ddec0
2024-05-08gnu: Add r-alabaster-se.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-alabaster-se): New variable. Change-Id: I698a2d678e4819d9ac4b2668a2f7ef2063f8d674
2024-05-08gnu: Add r-alabaster-sce.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-alabaster-sce): New variable. Change-Id: I8121614d5b93922555b6cb5fd7a05d68980aff20
2024-05-08gnu: Add r-alabaster-ranges.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-alabaster-ranges): New variable. Change-Id: I99e1e6549537acb37de2788961dbd17ef6c1de27
2024-05-08gnu: Add r-alabaster-matrix.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-alabaster-matrix): New variable. Change-Id: If5b438983a70f8f81e3442d8a1cb3821f4e3489a
2024-05-08gnu: Add r-alabaster-base.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-alabaster-base): New variable. Change-Id: Ifb9fe95fb237d12dadf134278f130e614925b5ec
2024-05-08gnu: Add r-alabaster-schemas.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-alabaster-schemas): New variable. Change-Id: I3d9218af9b4408e3375f9ccd98a4c95935b2c273
2024-05-08gnu: r-cytoml: Update to 2.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.16.0. Change-Id: I14ae3ae0d5ff8d66b964651b6fe3753d934f1554
2024-05-08gnu: Add r-jsonvalidate.Ricardo Wurmus
* gnu/packages/cran.scm (r-jsonvalidate): New variable. Change-Id: I1393fb3b4034f870663dc887be783e8aaf4c9884
2024-05-08guix: Update Bioconductor version to 3.19.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Use 3.19 URL. * guix/import/cran.scm (%bioconductor-version): Set to 3.19. Change-Id: I7a2c4dfcdb2c4cdfef581f823d87e73acc163549
2024-05-08gnu: r-xts: Remove vignette outputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-xts)[source]: Add snippet to remove generated files. Change-Id: Iba82b900e632e2cf5a99c9deb807bae6cf3dabcd
2024-05-08gnu: r-desctools: Set HOME variable.Ricardo Wurmus
* gnu/packages/statistics.scm (r-desctools)[argumonts]: Add phase 'pre-check. Change-Id: Icec222a5cdcb2c95ad7bd600ce5188bd5588bb4e
2024-05-08gnu: r-with-tests: Update to 4.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-with-tests): Update to 4.4.0. Change-Id: If77c95867cc16141c397e48c899a9ade3e89876d
2024-05-08gnu: kubo: Unbundle go-cidutil, go-log and go-ipfs-util.Artyom V. Poptsov
* gnu/packages/ipfs.scm (kubo) [source]: Delete "go-cidutil", "go-log", "go-ipfs-util" from bundled packages. [inputs]: Add go-github-com-ipfs-go-cidutil, go-github-com-ipfs-go-log, go-github-com-ipfs-go-log-v2, and go-github-com-ipfs-go-ipfs-util. Change-Id: I3e49deb9572c6ac471210a392a52117fd0b9ce1a Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-08gnu: Add go-github-com-ipfs-go-cidutil.Artyom V. Poptsov
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-cidutil): New variable. Change-Id: I6077fc00d22b541a959a6623c8666c35288ca105 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-08gnu: Add go-github-com-ipfs-go-log.Artyom V. Poptsov
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-log): New variable. Change-Id: I5b5b1d594b5458a7ca156346c6a6dc3c8d5bd69d Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-08gnu: Add go-github-com-ipfs-go-log-v2.Artyom V. Poptsov
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-log-v2): New variable. Change-Id: Id6d85bfa883670345420c21937681ae2844f6263 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-07gnu: Add go-github-com-ipfs-go-detect-race.Artyom V. Poptsov
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-detect-race): New variable. Change-Id: Ic65c12a717a50c4309bc89d29d158a43fbc0c81a Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-07gnu: Add go-github-com-ipfs-go-ipfs-util.Artyom V. Poptsov
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-util): New variable. Change-Id: Ic496282dc62b7c0d5bd9017aff6a3818b2661309 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-07gnu: kubo: Unbundle go-bazil-org-fuse.Sharlatan Hellseher
* gnu/packages/ipfs.scm (kubo) [source]: Remove vendor/bazil.org. [inputs]: Add go-bazil-org-fuse. Change-Id: Ie55e609c15a6eaca7ec32521a55620bf674af240
2024-05-07gnu: Add go-bazil-org-fuse.Sharlatan Hellseher
* gnu/packages/golang-xyz.scm (go-bazil-org-fuse): New variable. Change-Id: I933d90dca50110f53831febc81d587c14973934f
2024-05-07gnu: go-git-sr-ht-emersion-go-scfg: Move to golang-xyz.Sharlatan Hellseher
* gnu/packages/golang.scm: (go-git-sr-ht-emersion-go-scfg): Move from here ... * gnu/packages/golang-xyz.scm: ... to here Change-Id: I75cc680543313e41abc86e71d48a9be9e9ce694a
2024-05-07gnu: go-git-sr-ht-emersion-gqlclient: Move to golang-web.Sharlatan Hellseher
* gnu/packages/golang.scm (go-git-sr-ht-emersion-gqlclient): Move from here ... * gnu/packages/golang-web.scm: ... to here. Change-Id: I2b07dc198f6710680da0430e5f302893060e37b8
2024-05-07gnu: go-git-sr-ht-sircmpwn-getopt: Move to golang-xyz.Sharlatan Hellseher
* gnu/packages/golang.scm (go-git-sr-ht-sircmpwn-getopt): Move from here ... * gnu/packages/golang-xyz.scm: ... to here. Change-Id: Ic53ec6828f7389326191b659dd16b623e6d1af43
2024-05-07gnu: web: Remove syncthing module from used modules.Sharlatan Hellseher
There is no more mudule from syncthing which needs to be imported anymore. * gnu/packages/web.scm: Remove (gnu packages syncthing) module. Change-Id: I688e72009e2daa5e75eaeaaeff9026ca888b266b
2024-05-07gnu: go-github-com-nbrownus-go-metrics-prometheus: Disable tests.Sharlatan Hellseher
* gnu/packages/golang-xyz.scm (go-github-com-nbrownus-go-metrics-prometheus): Disable all tests. Change-Id: I7f340fd1e58edc0203068c762a1bbc798003a84b
2024-05-07gnu: tmsu: Enable test suite.Sharlatan Hellseher
* gnu/packages/file-systems.scm (tmsu): Fail over to the project's Makefile targets. [arguments]: <#:go>: Use go-1.21. <#:phases>: Add 'adjust-makefile' phase. Use custom 'build, 'check and 'install phases. Change-Id: Ice920f2196123f1a1f1561879ab919bc0d4e8512
2024-05-07gnu: sqls: Use go-1.21.Sharlatan Hellseher
Merge all inputs into native-inputs since the output result of the package is an executable that does not require sources from Golang modules to be available after installation. * gnu/packages/databases.scm (sqls): [arguments]: <#:go>: Use go-1.21. [inputs]: Remove go-github-com-go-sql-driver-mysql, go-github-com-lib-pq, go-github-com-mattn-go-runewidth, go-github-com-mattn-go-sqlite3, go-github-com-olekukonko-tablewriter, go-github-com-pkg-errors, go-github-com-sourcegraph-jsonrpc2, go-golang-org-x-crypto, go-golang-org-x-xerrors, and go-gopkg-in-yaml-v2. [native-inputs]: Add go-github-com-go-sql-driver-mysql, go-github-com-lib-pq, go-github-com-mattn-go-runewidth, go-github-com-mattn-go-sqlite3, go-github-com-olekukonko-tablewriter, go-github-com-pkg-errors, go-github-com-sourcegraph-jsonrpc2, go-golang-org-x-crypto, go-golang-org-x-xerrors, and go-gopkg-in-yaml-v2. Change-Id: I9312a483dfa954b5f0ad4cfac04b5153570bf571
2024-05-07gnu: Add go-github-com-msteinert-pam-v2.Sharlatan Hellseher
* gnu/packages/golang-xyz.scm (go-github-com-msteinert-pam-v2): New variable. Change-Id: I7dfcb72703722f894eb52c603f02e64e7350f53a
2024-05-07gnu: Add soju.Jesse Eisses
* gnu/packages/irc.scm (soju): New variable.. Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I18b7e574339e98fdf2623338aac1635c8e727699
2024-05-07gnu: go-github-com-matttproud-golang-protobuf-extensions-pbutil: Update to ↵Jesse Eisses
2.0.0. * gnu/packages/syncthing.scm (go-github-com-matttproud-golang-protobuf-extensions-pbutil): Update to 2.0.0. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: Ia9f1acacd337b95526ee0b9b7b31f1de598f30d3
2024-05-07gnu: go-github-com-prometheus-client-golang: Update to 1.17.0.Jesse Eisses
* gnu/packages/golang.scm (go-github-com-prometheus-client-golang): Update to 1.17.0. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I4d3e9d3e61991f94fc2a7bd4b85e7d4010c4b508
generated by cgit v1.2.3 (git 2.50.1) at 2025-09-11 17:49:49 +0000