summaryrefslogtreecommitdiff
path: root/gnu/packages/python-science.scm
AgeCommit message (Collapse)Author
2025-03-31gnu: Add python-numdifftools.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-numdifftools): New variable. Change-Id: I0b5899e0bff10b488df5377c274eca63b26f9751
2025-03-31gnu: Add python-algopy.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-algopy): New variable. Change-Id: I6630f4677e0bd33f321cce9e6d1f40a6bf36c625
2025-03-30gnu: python-bottleneck: Update to 1.4.2.Vinicius Monego
* gnu/packages/python-science.scm (python-bottleneck): Update to 1.4.2. [source]: Update URI. [build-system]: Use pyproject-build-system. [arguments]: Use G-Expressions. <#:phases>: Add phase 'rebuild-ext before 'check. Do not override the 'check phase. [native-inputs]: Remove python-hypothesis, python-pytest-runner. Add python-setuptools, python-wheel. Change-Id: I7a79b126d2bd069eaa4e3cf7d5f05bcb482fb67c
2025-03-23gnu: python-vedo: Update to 2025.5.3.Sharlatan Hellseher
fenics is no longer required and it fails to build, see #77195. * gnu/packages/python-science.scm (python-vedo): Update to 2025.5.3, fix build. [build-system]: Swap to pyproject-build-system. [arguments] <tests?>: Disable as depend on remote data. <phases>: Remove 'fix-tests, 'mpi-setup, use default 'check, keep 'sanity-check; add 'relax-requirements. [propagated-inputs]: Remove fenics; add python-pygments. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ifbe63d794f592083f2e65366404f152fda9b3136
2025-03-23gnu: python-tdda: Update to 2.2.17.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-tdda): Update to 2.2.17. [arguments] <test-flags>: Skip one failing test. <phases>: Use default 'check, add 'fix-Python3.11-datetime.UTC. [native-inputs]: Add python-chardet, python-pyarrow, python-pytest, and python-rich. Change-Id: I9d268a8656f51484c3d6c59a86b7537e50f864dc
2025-03-23gnu: python-gpy: Move to machine-learning.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-gpy): Move from here ... * gnu/packages/machine-learning.scm: ... to here. Change-Id: Id1c8574c166014c87ffa484ea84f798eb7f53844
2025-03-23gnu: python-gpy: Update to 1.13.2.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-gpy): Update to 1.13.2. Fix build and refresh package style. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I446821dace8cc9c99543f0940e400ca4fc081b08
2025-03-16gnu: python-pint: Move to python-science.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-pint): Move from here ... * gnu/packages/python-science.scm: ... to here. Change-Id: Iabfce6ac788e01d42307a678979077cd61618693
2025-03-03gnu: python-trimesh: Skip tests requiring network.Lars Bilke
* gnu/packages/python-science (python-trimesh)[arguments]<#:test-flags>: Skip network tests. Change-Id: I82389eca3baf14322875daa9aa33f74a1066c8e3 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2025-03-03gnu: python-pandas: Skip some tests on 32bit systems.Efraim Flashner
* gnu/packages/python-science.scm (python-pandas)[arguments]: Adjust the test-flags when not building on a 64bit system to skip some incompatible tests. Change-Id: Ic581cc6bf4ade2d92425c38df10bc45beaf4009e
2025-02-28gnu: Add python-mpsplines.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-mpsplines): New variable. Change-Id: I1ae05c5bff783f7716e578bfc01699a10d13c337
2025-02-28gnu: Add python-cmocean.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-cmocean): New variable. Change-Id: I8b304c0280832f202714df278960493cbd3b12df
2025-02-28gnu: python-mpl-scatter-density: Update to 0.8.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-mpl-scatter-density): Update to 0.8. [source] <uri>: Adjust it as PyPI archive name has been changed upstream. Change-Id: Ic049ea153503cfa92c5d19b272afb00e64f7a28e
2025-02-27gnu: python-vaex-core: Update to 4.17.1.Ricardo Wurmus
* gnu/packages/python-science.scm (python-vaex-core): Update to 4.17.1. [arguments]: Remove phase 'patch-for-pydantic. [native-inputs]: Use python-cython-3 instead of python-cython. Change-Id: I5fdb8f19b5d334058c5ece215a288ac4abd7647f
2025-02-27gnu: python-pandera: Use Pydantic 2.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandera)[propagated-inputs]: Replace python-pydantic with python-pydantic-2. [arguments]: Disable one test. Change-Id: Ie222a484f4d8a540ffdf6db6da09e600723169d7
2025-02-27gnu: python-vaex-core: Use pyproject-build-system and Pydantic 2.Ricardo Wurmus
* gnu/packages/python-science.scm (python-vaex-core)[build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase; add phase 'patch-for-pydantic. [propagated-inputs]: Replace python-pydantic with python-pydantic-2; add python-pydantic-settings. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I0e3d4d30940f55e234a5971431dc1c3fec2abce3
2025-02-25gnu: python-pyvista: Update to 0.44.2.reza
* gnu/packages/python-science.scm (python-pyvista): Update to 0.44.2 [build-system]: Change to pyproject-build-system. [native-inputs]: Add native-inputs for testing. [modify-phases]: Enable sanity-check and check phase, disable failing tests and vtk dependency check and redirect $HOME variable. Change-Id: I4293e99be12d096e639e47b8066116ba519909a8 Signed-off-by: Christopher Baines <mail@cbaines.net>
2025-02-19gnu: Fix some misspellings.Efraim Flashner
Change-Id: I316652aff7418af4b8e83bea24638b1513f8aa97
2025-02-15gnu: python-plotnine: Update to 0.14.5.Ricardo Wurmus
* gnu/packages/python-science.scm (python-plotnine): Update to 0.14.5. [arguments]: Disable more image tests; add phase 'pretend-version. Change-Id: I7ba5cc47ff93187785b0d8c2f5e294e0d08c9f54
2025-02-11gnu: Add python-imagehash.Vinicius Monego
* gnu/packages/python-science.scm (python-imagehash): New variable. Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: Ie773b4504d97ac2678e0776a27eb661d909fed47
2025-02-10gnu: Add python-nibabel.Vinicius Monego
* gnu/packages/python-science.scm (python-nibabel): New variable. Change-Id: I27d3841def6f360ae3996aacb787142bcfa92291 Signed-off-by: Andreas Enge <andreas@enge.fr>
2025-02-07gnu: python-pandas-1: Disable failing test.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandas-1):[arguments]: Disable failing test_nat_comparisons. Change-Id: Ifdd3cfb244e03b9412c7caa458557ce3fd30e38a
2025-01-28gnu: python-unyt: Update to 3.0.3, fix build.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-unyt): Update to 3.0.3. Fix build. Change-Id: Ic894ddfa982b9d41b40fc7e18149de099dd705f6
2025-01-28gnu: Add python-scikit-misc.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-misc): New variable. Change-Id: I8fb3c46fe8a927e5d2fbd3222a423330e771379e
2025-01-27gnu: python-deepdish: Fix indentation.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-deepdish): Fix indentation. Change-Id: Idf8a0b5cdb9e371cb5d1f5f51f993da6209342d5
2025-01-27gnu: python-deepdish: Update to 0.3.7-0.3f2dff7, fix build.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-deepdish): Update to 0.3.7-0.3f2dff7. [source]: Swap to git checkout containing fixes for NumPy. [native-inputs]: Add python-pytest. Change-Id: Icbc8c0895bcac0bdfede65ac7b6006186c684a70
2025-01-27gnu: python-pods: Update to 0.1.17.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pods): Update to 0.1.17. [native-inputs]: Remove python-setuptools and python-wheel; add python-poetry-core. Change-Id: I68db152ec47c54ffb92528863e9faedec11440ac
2025-01-27gnu: python-paramz: Add missing inputs, fix build.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-paramz): [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I3d33d04f523a214995e82d03d5bb1ce669962398
2025-01-27gnu: python-pods: Fix build.Felix Gruber
* gnu/packages/python-science.scm (python-pods): Fix build. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I758d7a45e8e7baf436abe3c0b2ad92241c0bab48
2025-01-20gnu: python-libneuroml: Update to 0.6.5.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-libneuroml): Update to 0.6.5. Fix build. [propagated-inputs]: Remove python-six; add python-natsort and python-networkx. Change-Id: I750f90cebdeba46286239b18569300a2e4ce8c80
2025-01-20gnu: python-modin: Update to 0.32.0.Ricardo Wurmus
* gnu/packages/python-science.scm (python-modin): Update to 0.32.0. [build-system]: Use pyproject-build-system. [arguments]: Remove phase 'make-files-writable; disable one test; update custom 'check phase. [propagated-inputs]: Add python-s3fs. [native-inputs]: Add python-boto3 and python-wheel. Change-Id: I1d74013902e3387945586192b88c1e4fd8256733
2025-01-20gnu: python-pynetdicom: Update to 2.1.1.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pynetdicom): Update to 2.1.1. [native-inputs]: Add python-codespell, python-coverage, python-poetry-core, python-pytest-cov, python-pytest-xdist, python-sphinx, and python-sphinx-rtd-theme; remove python-pyfakefs, python-setuptools, and python-wheel. [propagated-inputs]: Add python-mypy, python-numpydoc, and python-pyfakefs. Change-Id: Ic0089df89cd34b50c31370581db7a6e88884199c
2025-01-20gnu: python-spin: Fix build.宋文武
* gnu/packages/python-science.scm (python-spin)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ieeaa5f7186e51a16022910da89704e8cc282d935
2025-01-20gnu: python-xarray-schema: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-xarray-schema)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: I7cecc17468f94c9987ed349b0dd0d319e175e399
2025-01-20gnu: python-xarray-datatree: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-xarray-datatree)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: I5c2d5ec44b13c82e7400687accccf81427aa0da9
2025-01-20gnu: python-fastcluster: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-fastcluster)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: I2fa034054f5183e04c2f1e673f841f07799a7b94
2025-01-20gnu: python-cvxpy: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-cvxpy)[native-inputs]: Add python-wheel. Change-Id: I66f4f504a0a4101abc845b7b7d0a0fccbd6b91b9
2025-01-20gnu: python-scikit-survival: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-survival)[native-inputs]: Add python-setuptools. Change-Id: I52e98c787cec226590f21c98e4287a41fb41f3d3
2025-01-20gnu: python-qdldl: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-qdldl)[native-inputs]: Add python-wheel. Change-Id: I6bca560b20a9c259eae95c09edcf10ead685ec21
2025-01-20gnu: python-osqp: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-osqp)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ief43d97442a98935dea1499c67e022e9beb5359e
2025-01-20gnu: python-scikit-fuzzy: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-fuzzy)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: Idbaf5fa622b3584f8fd348ec0783605936d3bf41
2025-01-20gnu: python-scikit-allel: Update to 1.3.13.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-allel): Update to 1.3.13. [propagated-inputs]: Remove python-click. [native-inputs]: Remove python-scipy. Change-Id: I3c29bd3d9f87d0866da747c344740bad71cae1c3
2025-01-20gnu: python-scikit-opt: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-opt)[native-inputs]: Add python-setuptools. Change-Id: Id14e3964257e250c1ba597c6d8fe1a0410fa475f
2025-01-20gnu: python-traittypes: Fix tests.Ricardo Wurmus
* gnu/packages/python-science.scm (python-traittypes)[arguments]: Add phase 'numpy-compatibility. Change-Id: I41d55d65d0dafd44029de38b3044d9fad378db50
2025-01-20gnu: python-pandas-2: Restrict number of test processes.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Restrict to at most four processes. Change-Id: I8ee4cb29ad922e9b853515b5f0e8f8aabca52c92
2025-01-20gnu: python-pandas-2: Remove X.Ricardo Wurmus
These tests are not run anyway, so there is no need to launch an X server. * gnu/packages/python-science.scm (python-pandas-2)[arguments]: Rename 'prepare-x phase to 'pre-check. [native-inputs]: Remove xorg-server-for-tests. Change-Id: Ib85883360397d2715a1893b74435d96a1d119f9e
2025-01-20gnu: python-pythran: Update to 0.17.0.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pythran): Update to 0.17.0. [build-system]: Use pyproject-build-system. [source]: Remove obsolete snippet. [arguments]: Remove phase 'do-not-install-third-parties and custom 'check phase; use #:test-flags and add 'pre-check phase. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I49ebdd21cfb0668dd84f0d12c460a86ed694c7d6
2025-01-20gnu: python-scikit-build-core: Update to 0.10.7.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-build-core): Update to 0.10.7. [native-inputs]: Add python-pytest-subprocess. Change-Id: I3da5a9e5d59900335deee2d4a5a1c80d1dd7c5ab
2025-01-20gnu: python-qdldl: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-qdldl)[native-inputs]: Add python-setuptools. Change-Id: I5f4c5b8f368da21da1f7d5c5cedd7a806dbdd709
2025-01-01gnu: python-upsetplot: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-science.scm (python-upsetplot)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ibddb6f183345af29dfce218145c7c8c83aa9c244
generated by cgit v1.2.3 (git 2.50.1) at 2025-08-04 11:21:47 +0000