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2022-05-12gnu: python-pudb: Update to 2022.1.1 and rename from pudb.Maxim Cournoyer
Renaming rationale: pudb can also be used as a Python library (like pdb). * gnu/packages/python-xyz.scm (python-pudb): Update to 2022.1.1. [phases]{check}: Remove obsolete 'add-installed-pythonpath' call. Invoke pytest verbosely. [native-inputs]: Remove python-numpy. [propagated-inputs]: Apply guix style. (pudb): Define as a deprecated alias to python-pudb.
2022-05-12gnu: Add python-ipdb.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-ipdb): New variable.
2022-05-12gnu: python-numpy-documentation: Overhaul package definition.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-numpy-documentation): Relocate next to the python-numpy package in the module. Inherit from python-numpy. [version, source, build-system, home-page, license]: Remove fields, now inherited. [phases]{add-gnu-freefont-to-texmf}: New phase. {install}: Patch conf.py to allow building the info manual. Set HOME. Copy the whole generated HTML directory. Parallelize documentation build. [native-inputs]: Use new style. Add font-gnu-freefont, fontconfig, python-breathe, python-ipython, python-pandas, python-pydata-sphinx-theme, python-scipy, python-sphinx-panels, texlive-bin, texlive-cbfonts, texlive-cm-super, texlive-greek-fontenc, texlive-latex-expdlist, texlive-polyglossia and texlive-xindy. Remove pkg-config, the previous "texlive" updmap.cfg package, scipy-sphinx-theme, and do not inherit the native inputs of python-numpy. [synopsis]: Refine. [description]: Expound a bit.
2022-05-12gnu: python-numpydoc: Update to 1.2.1.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-numpydoc): Update to 1.2.1. Fix indentation. [phases]{relax-requirements}: New phase. [propagated-inputs]: Add python-jinja2.
2022-05-12gnu: dynaconf: Fix build following python-click upgrade.Maxim Cournoyer
* gnu/packages/python-xyz.scm (dynaconf) [phases]{patch-for-click-8}: New phase. {check}: Remove extraneous setenv call. [native-inputs]: Use the regular python-pytest variable.
2022-05-12gnu: python-croniter: Update to 1.3.4.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-croniter): Update to 1.3.4.
2022-05-12gnu: Remove python2-jmespath.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python2-jmespath): Delete variable.
2022-05-12gnu: python-cantools: Update to 37.0.7.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-cantools): Update to 37.0.7. [arguments]: Use gexps. [phases]: Strip trailing #t. {build-doc}: Use make -C instead of with-directory-excursion. {install-doc}: Adjust for gexp. [native-inputs]: Use new style. [propagated-inputs]: Add python-argparse-addons, python-crccheck, python-matplotlib and python-parameterized.
2022-05-12gnu: Add python-crccheck.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-crccheck): New variable.
2022-05-12gnu: python-mkdocs: Update to 1.3.0.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-mkdocs): Update to 1.3.0. [source]: Use git. [phases]{check}: New override. [propagated-inputs]: Remove python-livereload, python-lunr and python-tornado. Add python-babel, python-ghp-import, python-importlib-metadata, python-markupsafe, python-mdx-gh-links, python-mergedeep, python-packaging, python-pyyaml-env-tag and python-watchdog.
2022-05-12gnu: Add python-mdx-gh-links.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-mdx-gh-links): New variable.
2022-05-12gnu: Add python-pyyaml-env-tag.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-pyyaml-env-tag): New variable.
2022-05-12gnu: Add python-mergedeep.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-mergedeep): New variable.
2022-05-12gnu: python-multipart: Fix build with PyYAML 6.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-multipart) [phases]{patch-test-suite}: Substitute yaml.load for yaml.safe_load.
2022-05-12gnu: Add python-toolrack.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-toolrack): New variable.
2022-05-12gnu: python-bitstruct: Update to 8.14.0.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-bitstruct): Update to 8.14.0.
2022-05-12gnu: Add python-argparse-addons.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-argparse-addons): New variable.
2022-05-12gnu: python-celery: Update to 5.2.6 and enable tests.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-celery): Update to 5.2.6. [tests?]: Delete argument. [phases]{delete-integration-tests}: Delete phase. {relax-requirements}: New phase. {check}: Ignore the "t/integration" directory and the t/unit/backends/test_mongodb.py file. Remove skip directive for test_all_reqs_enabled_in_tests. [native-inputs]: Add python-dnspython. [propagated-inputs]: Delete python-boto3 and python-cryptography.
2022-05-12gnu: python-kombu: Update to 5.2.4.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-kombu): Update to 5.2.4. [phases]{delete-transport-tests}: Delete phase. {check}: New phase. [native-inputs]: Remove python-mock.
2022-05-12gnu: python-amqp: Update to 5.1.1 and enable tests.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-amqp): Update to 5.1.1. [arguments]: New field. [native-inputs]: Add python-pytest.
2022-05-12gnu: python-can: Update to 4.0.0.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-can): Update to 4.0.0. [phases]: Strip trailing #t. {relax-version-requirements}: Relax pytest-cov requirement. {check}: Override phase. [propagated-inputs]: Remove python-aenum. Add python-msgpack and python-typing-extensions. [native-inputs]: Add python-parameterized.
2022-05-12gnu: Add python-bson.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-bson): New variable.
2022-05-12gnu: python-parse-type: Update to 0.6.0, fixing build.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-parse-type): Update to 0.6.0. [arguments]: New field. [native-inputs]: Remove python-pytest-runner and python-setuptools.
2022-05-12gnu: python-readme-renderer: Update to 34.0.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-readme-renderer): Update to 34.0. [phases]{check}: Skip GFM tests for now.
2022-05-12gnu: python-types-dataclasses: Fix typo.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-types-dataclasses): Fix typo in description.
2022-05-12gnu: python-numba: Update to 0.55.1.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-numba): Update to 0.55.1.
2022-05-12gnu: python-numpy: Update to 1.21.6 and parallelize build/tests.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-numpy): Update to 1.21.6. Move inputs and native-inputs fields after arguments. Use gexps. [modules]: New argument. [phases]{parallelize-build}: New phase. {configure-blas}: Format via (ice-9 format). {fix-executable-paths}: Use search-file-input. Remove obsolete system_info.py substitution. {check}: Remove extraneous add-installed-pythonpath and setenv calls. Provide the '-n' pytest-xdist option. [native-inputs]: Use python-hypothesis-next. (python-numpy-next): Inherit from python-numpy. (python2-numpy): Adjust for gexps. [phases]{delete-failing-test}: Rename to... {delete-failing-tests}: ... this. (python2-numpy-1.8): Likewise, and delete 'delete-failing-tests' phase. Disable tests. [native-inputs]: Define as the empty list.
2022-05-12gnu: Add python-dictpath.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-dictpath): New variable.
2022-05-12gnu: Add python-rfc3339-validator.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-rfc3339-validator): New variable.
2022-05-12gnu: Add python-strict-rfc3339.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-strict-rfc3339): New variable.
2022-05-12gnu: python-ipython-documentation: Also build info and pdf targets.Maxim Cournoyer
* gnu/packages/patches/python-ipython-documentation-chars.patch: New file. * gnu/packages/patches/python-ipython-documentation-repro.patch: Likewise. * gnu/local.mk: Register them. * gnu/packages/python-xyz.scm (python-ipython-documentation) [source]: Apply patches. [arguments]: Use gexps. [phases]{sanitize-sources}: New phase. {configure-sphinx-for-xelatex}: Likewise. {install}: Streamline. Also build and install the PDF and info manual. Enable parallel processing. [inputs]: Delete field. [propagated-inputs]: Remove texlive-updmap.cfg input. Add fontconfig, font-gnu-freefont, graphviz, python-docrepr, texlive-polyglossia, texlive-bin and texlive-xindy.
2022-05-12gnu: Add python-pep621.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-pep621): New variable.
2022-05-12gnu: python-notebook: Update to 6.4.10.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-notebook): Update to 6.4.10. [phases]{check}: Remove add-installed-pythonpath. [native-inputs]: python-nest-asyncio.
2022-05-12gnu: python-send2trash: Update to 1.8.0 and update home page.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-send2trash): Update to 1.8.0. [source]: Update Git URL. [phases]{pre-check}: Set HOME to /tmp directly. {check}: Override phase. [native-inputs]: Add python-pytest. [properties]: Delete field. (python2-send2trash): Delete variable. [home-page]: Update URL.
2022-05-12gnu: python-nbconvert: Update to 6.5.0.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-nbconvert): Update to 6.5.0. [arguments]: Use gexps. [phases]{fix-paths-and-tests}: Rename to... {fix-paths}: ... this. Find inputs via search-input-file. Patch inskcape file name. Disable tests in... {check}: ... this phase instead. Do not set HOME. Execute installed test suite. Run tests in parallel. Disable and not test_execute_widgets_from_nbconvert and test_execute_multiple_notebooks tests. [inputs]: Add inkscape. [native-inputs]: Delete python-pytest-cov and python-pytest-dependency. Use new style. [propagated-inputs]: Add python-beautifulsoup4. Reduce the texlive packages part of the generated updmap.cfg input, moving them to regular propagated inputs. Add texlive-unicode-math and texlive-lm-math.
2022-05-12gnu: python-bleach: Update to 5.0.0.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-bleach): Update to 5.0.0. [propagated-inputs]: Remove python-packaging and python-six. Add python-tinycss2.
2022-05-12gnu: python-anyio: Replace python-pytest-trio with python-trio.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-anyio) [phases]{check}: Remove extraneous add-installed-pythonpath call. Expound comment about IPv6 issues. [native-inputs]: Use regular python-pytest. Replace python-pytest-trio by python-trio.
2022-05-12gnu: python-ipyparallel: Update to 8.2.1.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-ipyparallel-bootstrap): Update to 8.2.1. [propagated-inputs]: Add python-entrypoints, python-psutil and python-tqdm. Update python-tornado to version 6. (python-ipyparallel)[phases]{check}: Override phase. [native-inputs]: Remove python-mock and python-nose. Add python-pytest-asyncio and python-pytest-tornado.
2022-05-12gnu: python-ipykernel: Update to 6.13.0.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-ipykernel): Update to 6.13.0. [origin]: Fix indentation. [phases]: Use gexps. {check}: Invoke pytest via tini {set-python-file-name}: Adjust to use search-input-file. [propagated-inputs]: Add python-debugpy, python-matplotlib-inline and python-psutil. [native-inputs]{python-nose}: Delete. {python-ipyrallel-bootstrap}: New native input. {python-pytest}: Replace with... {python-pytest-bootstrap}: ... this. {python-pytest-timeout, tini}: New native inputs.
2022-05-12gnu: python-jupyter-client: Update to 7.2.2.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-jupyter-client-bootstrap): Make the base package definition, moving most fields. Update to 7.2.2. [propagated-inputs]: Add python-entrypoints and python-nest-asyncio. (python-jupyter-client): Inherit from python-jupyter-client-bootstrap, adjusting accordingly. [native-inputs]: Add python-pytest-asyncio.
2022-05-12gnu: python-jupyter-core: Update to 4.10.0.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-jupyter-core): Update to 4.10.0. [phases]: Delete trailing #t. {check}: Remove extraneous add-installed-pythonpath. Skip the test_argv0, test_path_priority and test_not_on_path tests. [propagated-inputs, native-inputs]: Fix indentation.
2022-05-12gnu: python-nest-asyncio: Update to 1.5.5.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-nest-asyncio): Update to 1.5.5.
2022-05-12gnu: Add python-ipyparallel-bootstrap.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-ipyparallel): Morph into... (python-ipyparallel-bootstrap): ... this, moving native inputs to a new definition of... (python-ipyparallel): ... this.
2022-05-12gnu: python-greenlet: Update to 1.1.2.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-greenlet): Update to 1.1.2.
2022-05-12gnu: Add python-debugpy.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-debugpy): New variable. * gnu/packages/patches/python-debugpy-unbundle-pydevd.patch: New file. * gnu/local.mk: Register it.
2022-05-12gnu: Add python-pydevd.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-pydevd): New variable.
2022-05-12gnu: python-trio: Update to 0.20.0.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-trio): Update to 0.20.0. [phases]{patch-sleep}: New phase. [change-home]: Delete trailing #t. {check}: Run tests in parallel. Disable the test_cancel_scope_exit_doesnt_create_cyclic_garbage, test_ipython_exc_handler, test_for_leaking_fds and test_static_tool_sees_all_symbols tests. [native-inputs]: Add python-pytest-xdist.
2022-05-12gnu: python-black: Update to 22.3.0.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-black): Update to 22.3.0. [phases]{relax-version-requirements}: Delete phase. {use-absolute-file-names}: Streamline phase. {disable-broken-tests, remove-entrypoint}: Delete phases.
2022-05-12gnu: python-click: Update to 8.1.2 and honor TESTS?.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-click): Update to 8.1.2. [phases]{fix-paths}: Remove obsolete phase. {check}: Invoke pytest directly and honor TESTS?. (python2-click): Delete variable.
2022-05-12gnu: Add python-fonttools-next.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-fonttools-next): New variable.
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