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2021-09-07Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-09-06gnu: Use the non-deprecated TeX packages.Ludovic Courtès
This commit leaves 'dblatex' and 'texlive-hyperref' as users of deprecated packages, but these have many dependents. * gnu/packages/bioinformatics.scm (discrover)[native-inputs]: Use non-deprecated TeX Live packages. (velvet)[native-inputs]: Likewise. * gnu/packages/chez.scm (chez-scheme)[native-inputs]: Likewise. (chez-web)[native-inputs]: Likewise. * gnu/packages/engineering.scm (fastcap)[native-inputs]: Likewise. * gnu/packages/guile-xyz.scm (emacsy)[native-inputs]: Likewise. * gnu/packages/maths.scm (hypre)[native-inputs]: Likewise. * gnu/packages/music.scm (lilypond)[native-inputs]: Likewise. * gnu/packages/ocaml.scm (ocaml-bibtex2html)[native-inputs]: Likewise. * gnu/packages/plotutils.scm (asymptote)[native-inputs]: Likewise. * gnu/packages/python-xyz.scm (python-numpy-documentation)[native-inputs]: Likewise. (python-matplotlib-documentation)[native-inputs]: Likewise. (python-ipython-documentation)[native-inputs]: Likewise. (python-nbconvert)[native-inputs]: Likewise. (python-pypandoc)[native-inputs]: Likewise. * gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Likewise. * gnu/packages/tex.scm (texlive-pstool)[propagated-inputs]: Likewise. (teximpatient)[native-inputs]: Likewise. (texlive-latex-pgf)[propagated-inputs]: Likewise. (texlive-beamer)[propagated-inputs]: Likewise.
2021-09-05gnu: python-gast: Update to 0.5.2.Felix Gruber
* gnu/packages/python-xyz.scm (python-gast): Update to 0.5.2. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-09-04gnu: python-rarfile: Update to 4.0.Lars-Dominik Braun
This package is close to useless, because we lack the non-free unrar utility and the libarchive backend does not support most operations. * gnu/packages/python-xyz.scm (python-rarfile)[version]: Update to 4.0. [arguments]: Disable tests. [propagated-inputs]: Move… [inputs]: …here. [native-inputs]: Add pytest. [#:phases]: Use pytest for 'check and Add 'patch phase. (python2-rarfile): Remove, unsupported by upstream.
2021-09-04gnu: python-jellyfish: Update to 0.8.8.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-jellyfish)[version]: Update to 0.8.8. [arguments]: Use pytest. [properties]: Remove python2-variant. (python2-jellyfish): Remove, unsupported by upstream.
2021-09-04gnu: python-munkres: Update to 1.1.4.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-munkres) [version]: Update to 1.1.4. [arguments]: Re-enable test suite. [native-inputs]: Add pytest.
2021-09-04gnu: python-confuse: Update to 1.5.0.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-confuse)[version]: Update to 1.5.0. [propagated-inputs]: Remove python-pathlib. [synopsis]: Remove trailing dot.
2021-09-02gnu: Remove python2-selectors2.Pierre Langlois
* gnu/packages/python-xyz.scm (python2-selectors2): Remove variable.
2021-09-02gnu: Remove python2-rfc6555.Pierre Langlois
* gnu/packages/python-xyz.scm (python2-rfc6555): Remove variable. (python-rfc6555)[properties]: Remove field.
2021-09-01gnu: Add date2name.phodina
* gnu/packages/python-xyz.scm (date2name): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-08-31gnu: python-anyio: Avoid failing tests.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-anyio)[arguments]: Disable asyncio plugin, and explicitly disable network tests.
2021-08-31gnu: Remove python-pytest-mock-3.Ricardo Wurmus
* gnu/packages/check.scm (python-pytest-mock-3): Remove variable. * gnu/packages/python-xyz.scm (python-anyio)[native-inputs]: Replace python-pytest-mock-3 with python-pytest-mock.
2021-08-30gnu: python-bsddb3: Update to 6.2.9.Guillaume Le Vaillant
* gnu/packages/python-xyz.scm (python-bsddb3): Update to 6.2.9.
2021-08-28gnu: python-chai: Remove Python2 code.Guillaume Le Vaillant
* gnu/packages/patches/python-chai-drop-python2.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python-xyz.scm (python-chai)[source]: Use it.
2021-08-28gnu: python2-chai: Remove package.Guillaume Le Vaillant
Nothing depends on it. * gnu/packages/python-xyz.scm (python2-chai): Remove variable.
2021-08-28gnu: python-owslib: Fix build.Guillaume Le Vaillant
* gnu/packages/python-xyz.scm (python-owslib)[arguments]: Disable 'sanity-check' phase until dependencies for tests are packaged.
2021-08-23gnu: python2-pillow: Disable tests.Guillaume Le Vaillant
* gnu/packages/python-xyz.scm (python2-pillow)[arguments]: Disable tests.
2021-08-23gnu: python2-gamera: Disable wxpython support.Guillaume Le Vaillant
The package doesn't build when wxpython support is activated, and the only dependent (didjvu) doesn't need it. * gnu/packages/python-xyz.scm (python2-gamera)[inputs]: Remove python2-wxpython. [arguments]: Add 'disable-wx-support' phase.
2021-08-22gnu: python-jupyter-core: Use GUIX_PYTHONPATH.Efraim Flashner
* gnu/packages/python-xyz.scm (python-jupyter-core)[arguments]: Adjust custom 'patch-testsuite phase to use GUIX_PYTHONPATH as the PYTHONPATH.
2021-08-22gnu: python-jsonschema: Update inputs.Efraim Flashner
* gnu/packages/python-xyz.scm (python-jsonschema)[propagated-inputs]: Remove python-importlib-metadata. (python2-jsonschema)[propagated-inputs]: Add python2-importlib-metadata.
2021-08-22gnu: python-jsonschema: Fix test suite.Efraim Flashner
* gnu/packages/python-xyz.scm (python-jsonschema)[arguments]: Adjust custom 'check phase to honor #:tests and to set the JSON_SCHEMA_TEST_SUTE environment variable.
2021-08-16gnu: python-matplotlib: Update to 3.4.3.Mathieu Othacehe
* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.4.3. [source]: Remove patch that is applied upstream. [propagated-inputs]: Add python-certifi. [inputs]: Add qhull. [native-inputs]: Add python-wheel. [arguments]: Extend regexp to match more image comparison tests. Wrap long lines. Use system freetype and qhull libraries.
2021-08-16gnu: bpython: Update to 0.21.Mathieu Othacehe
* gnu/packages/python-xyz.scm (bpython): Update to 0.21. [propagated-inputs]: Use python-cwcwidth instead of python-wcwidth. Add python-pyxdg. [native-inputs]: Add python-tox and python-wheel.
2021-08-16gnu: Add python-cwcwidth.Mathieu Othacehe
* gnu/packages/python-xyz.scm (python-cwcwidth): New variable.
2021-08-15gnu: python-jedi: Update to 0.18.0-1.1d94494.Mathieu Othacehe
* gnu/packages/python-xyz (python-jedi): Update to 0.18.0-1.1d94494. [source]: Switch to git-fetch. [native-inputs]: Add python-django-stubs and python-typeshed. [arguments]: New unpack-submodule-sources phase. Also do not run pytest tests that fail with pytest 6 revision.
2021-08-15gnu: python-parso: Update to 0.8.2.Mathieu Othacehe
* gnu/packages/python-xyz.scm (python-parso): Update to 0.8.2.
2021-08-14gnu: Add python-sgmllib3k.Mathieu Othacehe
* gnu/packages/python-xyz.scm (python-sgmllib3k): New variable.
2021-08-12Merge branch 'master' into core-updates-frozenMarius Bakke
Conflicts: gnu/packages/algebra.scm gnu/packages/games.scm gnu/packages/golang.scm gnu/packages/kerberos.scm gnu/packages/mail.scm gnu/packages/python.scm gnu/packages/ruby.scm gnu/packages/scheme.scm gnu/packages/tex.scm gnu/packages/tls.scm gnu/packages/version-control.scm
2021-08-09gnu: python-identify: Honor #:tests in check phase.Efraim Flashner
* gnu/packages/python-xyz.scm (python-identify)[arguments]: Honor tests?.
2021-08-09gnu: python-identify: Fix building.Efraim Flashner
* gnu/packages/python-xyz.scm (python-identify)[arguments]: Skip the 'ensure-no-mtimes-pre-1980 phase.
2021-08-09gnu: Remove python-distutils/next.Efraim Flashner
* gnu/packages/python-xyz.scm (python-distutils/next): Remove variable. (python-virtualenv)[propagated-inputs]: Switch from python-distutils/next to python-distutils. * gnu/packages/version-control.scm (pre-commit)[inputs]: Same.
2021-08-09gnu: Remove python-setuptools-scm/next.Efraim Flashner
* gnu/packages/python-xyz.scm (python-setuptools-scm/next): Remove variable. (python-pikepdf) [native-inputs]: Swap for python-setuptools-scm. * gnu/packages/python-compression.scm (python-multivolumefile, python-bcj-cffi, python-ppmd-cffi, python-p77zr)[native-inputs]: Same. * gnu/packages/pep.scm (python-pep-adapter)[native-inputs]: Same.
2021-08-09gnu: python-astroid: Update to 2.6.6.Efraim Flashner
* gnu/packages/python-xyz.scm (python-astroid): Update to 2.6.6. [propagated-inputs]: Remove python-six. [native-inputs]: Remove python-dateutil.
2021-08-09gnu: python-jinja2: Update to 3.0.1.Efraim Flashner
* gnu/packages/python-xyz.scm (python-jinja2): Update to 3.0.1.
2021-08-09gnu: python-markupsafe: Update to 2.0.1.Efraim Flashner
* gnu/packages/python-xyz.scm (python-markupsafe): Update to 2.0.1.
2021-08-09gnu: python-itsdangerous: Update to 2.0.1.Efraim Flashner
* gnu/packages/python-xyz.scm (python-itsdangerous): Update to 2.0.1.
2021-08-09gnu: python-markupsafe: Honor #:tests in check phase.Efraim Flashner
* gnu/pacakges/python-xyz.scm (python-markupsafe)[arguments]: Honor #:tests flag.
2021-08-09gnu: python-soupsieve: Fix building.Efraim Flashner
* gnu/packages/python-xyz.scm (python-soupsieve)[arguments]: Skip sanity check. Convert to gexp.
2021-08-09gnu: python-pyicu: Update to 2.7.4.Efraim Flashner
* gnu/packages/python-xyz.scm (python-pyicu): Update to 2.7.4.
2021-08-09gnu: python-docopt: Honor #:tests? in check phase.Efraim Flashner
* gnu/packages/python-xyz.scm (python-docopt)[arguments]: In custom 'check phase honor #:tests?.
2021-08-09gnu: python-docopt: Fix test suite for pytest-6.Efraim Flashner
* gnu/packages/python-xyz.scm (python-docopt)[source]: Add patch. * gnu/packages/patches/python-docopt-pytest6-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2021-08-01Merge branch 'master' into core-updates-frozenMarius Bakke
2021-07-29Merge branch 'master' into core-updates-frozenMarius Bakke
Conflicts: gnu/packages/bioinformatics.scm gnu/packages/cmake.scm gnu/packages/curl.scm gnu/packages/emacs-xyz.scm gnu/packages/gpodder.scm gnu/packages/music.scm gnu/packages/patches/glibc-bootstrap-system.patch gnu/packages/python-xyz.scm gnu/packages/shells.scm gnu/packages/statistics.scm
2021-07-29gnu: python-pikepdf: Update to 2.16.1.Nicolas Goaziou
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.16.1.
2021-07-28gnu: Add python-zict.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-zict): New variable.
2021-07-28gnu: Add python-heapdict.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-heapdict): New variable.
2021-07-28gnu: python-dask: Update to 2021.7.1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-dask): Update to 2021.7.1. [arguments]: Do not skip test_shuffle.
2021-07-28gnu: python-partd: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-partd): Update to 1.2.0.
2021-07-28gnu: python-numexpr: Update to 2.7.3.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-numexpr): Update to 2.7.3.
2021-07-28gnu: python-cloudpickle: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-cloudpickle-testpkg): New variable. (python-cloudpickle): Update to 1.6.0; inherit from python-cloudpickle-testpkg. [source]: Fetch from git repository. [native-inputs]: Add python-cloudpickle-testpkg; replace python-tornado with python-tornado-6.
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