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| author | Andreas Enge <andreas@enge.fr> | 2025-07-17 22:03:36 +0200 |
|---|---|---|
| committer | Andreas Enge <andreas@enge.fr> | 2025-07-18 20:17:54 +0200 |
| commit | f5e7ae1810c3afab1e38f89e494dd9efd9182bdc (patch) | |
| tree | e75c1c995423b517ad34f2f18996c261c590abf8 | |
| parent | fe5d8f53590334c3d968d9e4050fbee23bbc1412 (diff) | |
gnu: r-sparsearray: Fix build.
* gnu/packages/bioconductor.scm (r-sparsearray)[arguments]<#:phases>:
Add 'relax-floating-point-tests.
Change-Id: Ia39226c46180422e9a979b68200d8175d1c2957b
| -rw-r--r-- | gnu/packages/bioconductor.scm | 20 |
1 files changed, 20 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 649e9be422..e20b25c737 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -25936,6 +25936,26 @@ variable and significantly correlated genes.") r-s4vectors r-xvector)) (native-inputs (list r-knitr r-testthat)) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'relax-floating-point-tests + ;; Test files that are modified below contain the following + ;; comment: + ;; "Looks like using expect_identical() is too strict for some + ;; operations on some systems" + ;; then modify the tests to expect_equal for specific functions + ;; on speficic systems. This looks as if we are in the presence + ;; of floating point discrepancies, which are poorly suited for + ;; a strict test suite rejecting builds. Since the tests also + ;; fail in Guix on x86_64 with gcc@14, let us use expect_equal + ;; everywhere. + (lambda _ + (substitute* + '("tests/testthat/test-NaArray-Math-methods.R" + "tests/testthat/test-SparseArray-Math-methods.R") + (("expect_identical\\(as") "expect_equal(as"))))))) (home-page "https://bioconductor.org/packages/SparseArray") (synopsis "Efficient in-memory representation of multidimensional sparse arrays") |