gnu: python-plotly: Move to python-science.

This package is not related to Graph at all and imported by
bioinformatics and astronomy modules only which are Science disciplines.
This change moves it closer to related packages and preserves copyright
header records extracted from git log.

* gnu/packages/graph.scm (python-plotly): Move from here ...
* gnu/packages/python-science.scm: ... to here.

Change-Id: I5544ebdf1f545b2d7740dd56cab2d04bbe9d7715

2 files changed, 109 insertions, 105 deletions

diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index 91698213f3..aa26853825 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -303,107 +303,6 @@ represented by horizontal lines, and edges are represented by vertical
 lines.")
       (license license:expat))))
 
-(define-public python-plotly
-  (package
-    (name "python-plotly")
-    (version "5.20.0")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/plotly/plotly.py")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "0i22sv8p3kl84nkldbv1253kld85rbwp2pdxivxn64wwflfpqvx6"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:test-flags
-      ;; 2658 passed, 18 skipped, 38 deselected, 574 warnings
-      #~(list "-k" (string-join
-                    ;; python-polars is not packaged yet.
-                    (list "not test_build_df_from_vaex_and_polars"
-                          "test_build_df_with_hover_data_from_vaex_and_polars"
-                          ;; ValueError
-                          "test_bytesio"
-                          "test_ensure_orca_ping_and_proc"
-                          "test_kaleido_engine_to_image_returns_bytes"
-                          "test_kaleido_fulljson"
-                          "test_latex_fig_to_image[eps]"
-                          "test_mimetype_combination"
-                          "test_orca_version_number"
-                          "test_pdf_renderer_show_override"
-                          "test_png_renderer_mimetype"
-                          "test_problematic_environment_variables[eps]"
-                          "test_server_timeout_shutdown"
-                          "test_simple_to_image[eps]"
-                          "test_svg_renderer_show"
-                          "test_to_image_default[eps]"
-                          "test_topojson_fig_to_image[eps]"
-                          "test_validate_orca"
-                          "test_write_image_string[eps]"
-                          "test_write_image_string_bad_extension_override"
-                          "test_write_image_string_format_inference[eps]"
-                          "test_write_image_writeable[eps]"
-                          ;; XXX: check why these tests fail
-                          "test_dependencies_not_imported"
-                          "test_external_server_url"
-                          "test_invalid_figure_json"
-                          "test_lazy_imports"
-                          "test_legend_dots"
-                          "test_linestyle"
-                          "test_orca_executable_path"
-                          "test_sanitize_json[auto]"
-                          "test_sanitize_json[json]"
-                          "test_scraper"
-                          "test_write_image_string_bad_extension_failure")
-                    " and not "))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'build 'skip-npm
-            ;; npm is not packaged so build without it
-            (lambda _
-              (setenv "SKIP_NPM" "T")))
-          (add-after 'unpack 'fix-version
-            ;; TODO: Versioneer in Guix gets its release version from the
-            ;; parent directory, but the plotly package is located inside a
-            ;; depth 3 subdirectory.  Try to use versioneer if possible.
-            (lambda _
-              (substitute* "packages/python/plotly/setup.py"
-                (("version=versioneer.get_version\\(),")
-                 (format #f "version=~s," #$version)))
-              (substitute* "packages/python/plotly/plotly/version.py"
-                (("__version__ = get_versions\\(\\)\\[\"version\"\\]")
-                 (format #f "__version__ = ~s" #$version)))))
-          (add-after 'fix-version 'chdir
-            (lambda _
-              (chdir "packages/python/plotly"))))))
-    (native-inputs
-     (list python-ipywidgets
-           python-pytest
-           python-setuptools
-           python-wheel
-           python-xarray))
-    (propagated-inputs
-     (list python-ipython
-           python-pandas
-           python-pillow
-           ;; python-polars
-           python-requests
-           python-retrying
-           python-scikit-image
-           python-statsmodels
-           python-tenacity
-           python-vaex-core))
-    (home-page "https://plotly.com/python/")
-    (synopsis "Interactive plotting library for Python")
-    (description "Plotly's Python graphing library makes interactive,
-publication-quality graphs online.  Examples of how to make line plots, scatter
-plots, area charts, bar charts, error bars, box plots, histograms, heatmaps,
-subplots, multiple-axes, polar charts, and bubble charts.")
-    (license license:expat)))
-
 (define-public python-louvain
   (package
     (name "python-louvain")
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index e45d3e3fff..41d4579d8f 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -1,11 +1,12 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2015, 2016, 2020-2025 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015, 2016, 2018, 2020-2025 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2015 Federico Beffa <beffa@fbengineering.ch>
 ;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
 ;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com>
-;;; Copyright © 2016, 2022-2025 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2021-2025 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016-2020, 2022 Marius Bakke <marius@gnu.org>
-;;; Copyright © 2019 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018, 2022 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2019, 2021, 2022, 2023, 2024 Maxim Cournoyer <maxim.cournoyer@gmail.com>
 ;;; Copyright © 2019 Giacomo Leidi <goodoldpaul@autistici.org>
 ;;; Copyright © 2020 Pierre Langlois <pierre.langlois@gmx.com>
@@ -14,15 +15,17 @@
 ;;; Copyright © 2021 Roel Janssen <roel@gnu.org>
 ;;; Copyright © 2021 Paul Garlick <pgarlick@tourbillion-technology.com>
 ;;; Copyright © 2021 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2021 Vagrant Cascadian <vagrant@debian.org>
 ;;; Copyright © 2021, 2023 Felix Gruber <felgru@posteo.net>
 ;;; Copyright © 2022 Malte Frank Gerdes <malte.f.gerdes@gmail.com>
 ;;; Copyright © 2021, 2022 Guillaume Le Vaillant <glv@posteo.net>
-;;; Copyright © 2022 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2022 Paul A. Patience <paul@apatience.com>
 ;;; Copyright © 2022 Wiktor Żelazny <wzelazny@vurv.cz>
 ;;; Copyright © 2022 Eric Bavier <bavier@posteo.net>
+;;; Copyright © 2022 kiasoc5 <kiasoc5@tutanota.com>
 ;;; Copyright © 2022, 2024 Antero Mejr <antero@mailbox.org>
 ;;; Copyright © 2022 jgart <jgart@dismail.de>
+;;; Copyright © 2022 Sarah Morgensen <iskarian@mgsn.dev>
 ;;; Copyright © 2023, 2024 Troy Figiel <troy@troyfigiel.com>
 ;;; Copyright © 2024-2025 Sharlatan Hellseher <sharlatanus@gmail.com>
 ;;; Copyright © 2024 Marco Baggio <marco.baggio@mdc-berlin.de>
@@ -4330,6 +4333,108 @@ and more
 @end itemize")
     (license license:gpl3)))
 
+(define-public python-plotly
+  (package
+    (name "python-plotly")
+    (version "5.20.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/plotly/plotly.py")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0i22sv8p3kl84nkldbv1253kld85rbwp2pdxivxn64wwflfpqvx6"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      ;; 2658 passed, 18 skipped, 38 deselected, 574 warnings
+      #~(list "-k" (string-join
+                    ;; python-polars is not packaged yet.
+                    (list "not test_build_df_from_vaex_and_polars"
+                          "test_build_df_with_hover_data_from_vaex_and_polars"
+                          ;; ValueError
+                          "test_bytesio"
+                          "test_ensure_orca_ping_and_proc"
+                          "test_kaleido_engine_to_image_returns_bytes"
+                          "test_kaleido_fulljson"
+                          "test_latex_fig_to_image[eps]"
+                          "test_mimetype_combination"
+                          "test_orca_version_number"
+                          "test_pdf_renderer_show_override"
+                          "test_png_renderer_mimetype"
+                          "test_problematic_environment_variables[eps]"
+                          "test_server_timeout_shutdown"
+                          "test_simple_to_image[eps]"
+                          "test_svg_renderer_show"
+                          "test_to_image_default[eps]"
+                          "test_topojson_fig_to_image[eps]"
+                          "test_validate_orca"
+                          "test_write_image_string[eps]"
+                          "test_write_image_string_bad_extension_override"
+                          "test_write_image_string_format_inference[eps]"
+                          "test_write_image_writeable[eps]"
+                          ;; XXX: check why these tests fail
+                          "test_dependencies_not_imported"
+                          "test_external_server_url"
+                          "test_invalid_figure_json"
+                          "test_lazy_imports"
+                          "test_legend_dots"
+                          "test_linestyle"
+                          "test_orca_executable_path"
+                          "test_sanitize_json[auto]"
+                          "test_sanitize_json[json]"
+                          "test_scraper"
+                          "test_write_image_string_bad_extension_failure")
+                    " and not "))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'build 'skip-npm
+            ;; npm is not packaged so build without it
+            (lambda _
+              (setenv "SKIP_NPM" "T")))
+          (add-after 'unpack 'fix-version
+            ;; TODO: Versioneer in Guix gets its release version from the
+            ;; parent directory, but the plotly package is located inside a
+            ;; depth 3 subdirectory.  Try to use versioneer if possible.
+            (lambda _
+              (substitute* "packages/python/plotly/setup.py"
+                (("version=versioneer.get_version\\(),")
+                 (format #f "version=~s," #$version)))
+              (substitute* "packages/python/plotly/plotly/version.py"
+                (("__version__ = get_versions\\(\\)\\[\"version\"\\]")
+                 (format #f "__version__ = ~s" #$version)))))
+          (add-after 'fix-version 'chdir
+            (lambda _
+              (chdir "packages/python/plotly"))))))
+    (native-inputs
+     (list python-ipywidgets
+           python-pytest
+           python-setuptools
+           python-wheel
+           python-xarray))
+    (propagated-inputs
+     (list python-ipython
+           python-pandas
+           python-pillow
+           ;; python-polars
+           python-requests
+           python-retrying
+           python-scikit-image
+           python-statsmodels
+           python-tenacity
+           python-vaex-core))
+    (home-page "https://plotly.com/python/")
+    (synopsis "Interactive plotting library for Python")
+    (description
+     "Plotly's Python graphing library makes interactive,publication-quality
+graphs online.  Examples of how to make line plots, scatter plots, area
+charts, bar charts, error bars, box plots, histograms, heatmaps, subplots,
+multiple-axes, polar charts, and bubble charts.")
+    (license license:expat)))
+
 (define-public python-plotnine
   (package
     (name "python-plotnine")