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| author | Janneke Nieuwenhuizen <janneke@gnu.org> | 2025-01-03 10:07:41 +0100 |
|---|---|---|
| committer | Andreas Enge <andreas@enge.fr> | 2025-07-18 20:17:22 +0200 |
| commit | 035bc12055a468be070a611f76e5e518afc3327f (patch) | |
| tree | 1591d13955bc94b9eb10f6654bdf764f99abe862 | |
| parent | baec3b196567167890ddcb7bb6b76cebc7f7c05c (diff) | |
gnu: python-pypairix: Update to 0.3.8 and fix build with gcc-14.
* gnu/packages/bioinformatics.scm (python-pypairix): Update to 0.3.8.
[arguments]: Use G-Expressions. Add phase "relax-gcc-14-strictness".
Change-Id: I5766c457da18ec7c9fedd83a583dc5e244f33dea
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 28 |
1 files changed, 16 insertions, 12 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0677977824..ff4ff7e244 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -20161,7 +20161,7 @@ bound.") (define-public python-pypairix (package (name "python-pypairix") - (version "0.3.7") + (version "0.3.8") ;; The tarball on pypi does not include the makefile to build the ;; programs. (source @@ -20173,19 +20173,23 @@ bound.") (file-name (git-file-name name version)) (sha256 (base32 - "1snr3lrmsld8sy77ng6ba6wcmd33xjccf1l2f3m6pi29xis9nd6p")))) + "1jlxj3xa67q1i58pmbi6imhvl6f5w9m5qxv0xd45ba86mp8mnmvz")))) (build-system python-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (add-before 'build 'build-programs - (lambda _ (invoke "make"))) - (add-after 'install 'install-programs - (lambda* (#:key outputs #:allow-other-keys) - (copy-recursively "bin" (string-append - (assoc-ref outputs "out") - "/bin")) - #t))))) + (list + #:phases + #~(modify-phases %standard-phases + (add-before 'build 'relax-gcc-14-strictness + (lambda _ + (setenv "CFLAGS" + (string-append "-g -O2" + " -Wno-error=incompatible-pointer-types" + " -Wno-error=int-conversion")))) + (add-before 'build 'build-programs + (lambda _ (invoke "make"))) + (add-after 'install 'install-programs + (lambda _ + (copy-recursively "bin" (string-append #$output "/bin"))))))) (inputs (list zlib)) (home-page "https://github.com/4dn-dcic/pairix") |