diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 42 |
1 files changed, 21 insertions, 21 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b8d00b4f65..4ca7998cc7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -25194,33 +25194,33 @@ module capable of computing base-level alignments for very large sequences.") (outputs '("out" "doc")) (arguments (list + #:test-exclude (string-join (list "TestFileMetaInformation" + "TestElement2" + "TestSCUValidation" + "TestWriter" + "TestAnonymizer4" + "TestPrinter1" + "TestEcho" + ;; The scanner tests depend on TestWriter output. + "TestStrictScanner1" + "TestStrictScanner2_1" + "TestStrictScanner2" + "TestStrictScanner2_2" + "TestFind") + "|") + #:configure-flags + #~(list "-DGDCM_BUILD_TESTING=true" + "-DGDCM_DOCUMENTATION:BOOL=ON" + "-DGDCM_PDF_DOCUMENTATION:BOOL=OFF" + (string-append "-DGDCM_INSTALL_DOC_DIR=" + #$output:doc "/share/doc/" #$name)) #:phases #~(modify-phases %standard-phases (add-before 'build 'set-HOME ;; The build spams ‘Fontconfig error: No writable cache ;; directories’ in a seemingly endless loop otherwise. (lambda _ - (setenv "HOME" "/tmp")))) - #:configure-flags - #~(list "-DGDCM_BUILD_TESTING=true" - (string-append "-DCMAKE_CTEST_ARGUMENTS=-E;" - "'TestFileMetaInformation" - "|TestElement2" - "|TestSCUValidation" - "|TestWriter" - "|TestAnonymizer4" - "|TestPrinter1" - "|TestEcho" - ;; The scanner tests depend on TestWriter output - "|TestStrictScanner1" - "|TestStrictScanner2_1" - "|TestStrictScanner2" - "|TestStrictScanner2_2" - "|TestFind'") - "-DGDCM_DOCUMENTATION:BOOL=ON" - "-DGDCM_PDF_DOCUMENTATION:BOOL=OFF" - (string-append "-DGDCM_INSTALL_DOC_DIR=" - #$output:doc "/share/doc/" #$name)))) + (setenv "HOME" "/tmp")))))) (native-inputs (list docbook-xsl doxygen graphviz libxslt)) (home-page "https://gdcm.sourceforge.net/wiki/index.php/Main_Page") (synopsis "Grassroots DICOM library") |