diff options
Diffstat (limited to 'gnu/packages/algebra.scm')
| -rw-r--r-- | gnu/packages/algebra.scm | 151 |
1 files changed, 97 insertions, 54 deletions
diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm index 83572e2fc6..4ee152d1e7 100644 --- a/gnu/packages/algebra.scm +++ b/gnu/packages/algebra.scm @@ -14,7 +14,7 @@ ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> ;;; Copyright © 2020, 2021, 2023, 2024, 2025 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2021 Lars-Dominik Braun <ldb@leibniz-psychology.org> -;;; Copyright © 2022 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2022 Maxim Cournoyer <maxim@guixotic.coop> ;;; Copyright © 2023 Mehmet Tekman <mtekman89@gmail.com> ;;; Copyright © 2025 Sharlatan Hellseher <sharlatanus@gmail.com> ;;; Copyright © 2025 Nigko Yerden <nigko.yerden@gmail.com> @@ -401,7 +401,7 @@ precision.") (define-public giac (package (name "giac") - (version "1.9.0-998") + (version "2.0.0-10") (source (origin (method url-fetch) @@ -413,7 +413,7 @@ precision.") "https://www-fourier.ujf-grenoble.fr/~parisse/debian/dists/" "stable/main/source/giac_" version ".tar.gz")) (sha256 - (base32 "1r71kl21xxf3872r0q25r2b9wpg03zrp08rsnpyqrhajmxb0ljbz")))) + (base32 "1lzb0jjmkg5ml1qfl0m00qqng4sxgfqwrbq10gpkp4b301k2ckv1")))) (build-system gnu-build-system) (arguments (list @@ -428,12 +428,12 @@ precision.") (substitute* (cons "micropython-1.12/xcas/Makefile" (find-files "doc" "^Makefile")) (("/bin/cp") (which "cp"))))) - (add-after 'unpack 'disable-failing-test - ;; FIXME: Tests failing. Not sure why. - (lambda _ - (substitute* "check/Makefile.in" - (("chk_fhan(4|11)") "") - (("chk_fhan(14|21)") "")))) ;fail specifically on i686 + (replace 'bootstrap + (lambda _ + ;; XXX: Regenerate "src/mkjs" to avoid a build error because + ;; the default file is bogus in a Guix environment. + (delete-file "src/mkjs") + (invoke "autoreconf" "-vfi"))) (add-after 'install 'fix-doc (lambda _ ;; Most French documentation has a non-commercial license, so we @@ -454,7 +454,7 @@ precision.") ;; TODO: Unbundle "libmicropython.a". (list ao fltk-1.3 - glpk-4 + glpk gmp gsl libjpeg-turbo @@ -474,9 +474,12 @@ precision.") perl tcsh)) (native-inputs - (list bison + (list autoconf + automake + bison flex hevea + libtool python-wrapper readline (texlive-local-tree))) @@ -527,9 +530,6 @@ fast arithmetic.") (properties '((release-monitoring-url . "http://flintlib.org/downloads.html"))))) -(define-public arb - (deprecated-package "arb" flint)) - (define-public python-flint (package (name "python-flint") @@ -722,19 +722,18 @@ binary.") (define-public bc (package (name "bc") - (version "1.07.1") + (version "1.08.2") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/bc/bc-" version ".tar.gz")) (sha256 (base32 - "0amh9ik44jfg66csyvf4zz1l878c4755kjndq9j0270akflgrbb2")) - (patches (search-patches "bc-fix-cross-compilation.patch")))) + "11jzg23ks39k58bnb5y55wxqqz6h534ys5900hz6axcp8bn0yixf")))) (build-system gnu-build-system) (native-inputs (list automake autoconf ed flex readline texinfo)) (inputs - (list readline)) + (list readline ncurses)) (arguments '(#:configure-flags (list "--with-readline") @@ -750,7 +749,7 @@ binary.") an interactive environment for evaluating mathematical statements. Its syntax is similar to that of C, so basic usage is familiar. It also includes \"dc\", a reverse-polish calculator.") - (license license:gpl2+))) + (license license:gpl3+))) ;; The original kiss-fft does not have a complete build system and does not ;; build any shared libraries. This is a fork used by Extempore. @@ -779,6 +778,34 @@ that can use fixed or floating data types and can easily be incorporated into a C program.") (license license:bsd-3))) +(define-public kissfft + (package + (name "kissfft") + (version "131.1.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/mborgerding/kissfft") + (commit version))) + (file-name (git-file-name name version)) + (sha256 "1yfws5bn4kh62yk6hdyp9h9775l6iz7wsfisbn58jap6b56s8j5s"))) + (build-system cmake-build-system) + (native-inputs + (list googletest + pkg-config + python-numpy-2 + python-wrapper)) + (inputs + (list fftw + libpng)) + (home-page "https://github.com/mborgerding/kissfft") + (synopsis "Simple @acronym{FFT, Fast Fourier Transform} library") + (description + "Kiss FFT is a mixed-radix Fast Fourier Transform based up on the +principle, 'Keep It Simple, Stupid.'") + (license license:bsd-3))) + (define-public fftw (package (name "fftw") @@ -1183,7 +1210,7 @@ Python.") ;; Then run 'CTest' with -V so we get more ;; details upon failure. (invoke "ctest" "-V" dash-j)))))))) - (home-page "https://eigen.tuxfamily.org") + (home-page "https://eigen.tuxfamily.org/index.php?title=Main_Page") (synopsis "C++ template library for linear algebra") (description "Eigen is a C++ template library for linear algebra: matrices, vectors, @@ -1235,40 +1262,56 @@ features, and more.") (synopsis "Micro-benchmarks of the Eigen linear algebra library"))) -(define-public eigen-for-tensorflow - (let ((changeset "fd6845384b86") - (revision "1")) - (package (inherit eigen) - (name "eigen-for-tensorflow") - (version (string-append "3.3.5-" revision "." changeset)) - (source (origin - (method hg-fetch) - (uri (hg-reference - (url "https://bitbucket.org/eigen/eigen") - (changeset changeset))) - (sha256 - (base32 - "12cwgah63wqwb66xji048hcxc1z5zjg8a7701zlia5zbilnnk1n5")) - (file-name (string-append name "-" version "-checkout")) - (modules '((guix build utils))) - (snippet - ;; There are 3 test failures in the "unsupported" directory, - ;; but maintainers say it's a known issue and it's unsupported - ;; anyway, so just skip them. - '(begin - (substitute* "unsupported/CMakeLists.txt" - (("add_subdirectory\\(test.*") - "# Do not build the tests for unsupported features.\n")))))) - (arguments - (substitute-keyword-arguments (package-arguments eigen) - ((#:phases phases) - `(modify-phases ,phases - (delete 'disable-some-tests) - ;; This test cannot be compiled - (add-after 'unpack 'gcc-compatibility - (lambda _ - (substitute* "test/CMakeLists.txt" - (("ei_add_test\\(stddeque") "#"))))))))))) +(define-public eigen-for-onnxruntime + (let ((commit "1d8b82b0740839c0de7f1242a3585e3390ff5f33") + (revision "0")) + (hidden-package + (package + (inherit eigen) + (name "eigen-for-onnxruntime") + (version (git-version "3.4.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://gitlab.com/libeigen/eigen") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0pxh81jjnz97ndwaanla6zch1128bfdrf2kgqxgxyjvqbdg1vqwi")))) + ;; XXX: Some tests fail, but onnxruntime will move on to the next + ;; release soon enough. + (arguments + (substitute-keyword-arguments (package-arguments eigen) + ((#:tests? tests? #t) + #f))))))) + +;; XXX: python-ml-dtypes uses this commit specifically since at least version +;; 0.2.0. It's not compiling with another eigen, so build this one for now. +(define-public eigen-for-python-ml-dtypes + (let ((commit "7bf2968fed5f246c0589e1111004cb420fcd7c71") + (revision "0")) + (hidden-package + (package + (inherit eigen) + (name "eigen-for-python-ml-dtypes") + (version (git-version "3.4.0" revision commit)) + (source + (origin + (inherit (package-source eigen)) + (method git-fetch) + (uri (git-reference + (url "https://gitlab.com/libeigen/eigen") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0yq69h7pasbzq5r83d974xi031r0z2y2x0my1rz5crky54i1j0r7")) + (patches '()))) + ;; XXX: Tests stable_norm_5 and stable_norm_6 are failing due to + ;; EIGEN_STATIC_ASSERT_VECTOR_SPECIFIC_SIZE. + (arguments + (substitute-keyword-arguments (package-arguments eigen) + ((#:tests? flag #f) #false))))))) (define-public xtensor (package |