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-rw-r--r--gnu/packages/astronomy.scm1038
1 files changed, 657 insertions, 381 deletions
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 5e5120ee92..1051fde7cb 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -17,6 +17,7 @@
;;; Copyright © 2024-2025 Artyom V. Poptsov <poptsov.artyom@gmail.com>
;;; Copyright © 2025 Vasilii Smirnov <vasilii.smirnov@mailbox.org>
;;; Copyright © 2025 Daniel Ziltener <dziltener@lyrion.ch>
+;;; Copyright © 2025 Hugo Buddelmeijer <hugo@buddelmeijer.nl>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -137,7 +138,7 @@
(define-public alfa
(package
(name "alfa")
- (version "2.2")
+ (version "2.3")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -145,7 +146,7 @@
(commit (string-append "v" version))))
(sha256
(base32
- "0aqxqar36822mh373awsl79j7zn8vik4yddyydsxv0c76gn4i2k3"))
+ "1wi7pjra49qyyz8qz2qcgjcjck16ld0zczavxqn2xksdx1p99ajs"))
(file-name (git-file-name name version))))
(build-system gnu-build-system)
(arguments
@@ -279,7 +280,7 @@ wide set of telescopes.")
(define-public astroterm
(package
(name "astroterm")
- (version "1.0.8")
+ (version "1.0.9")
(source
(origin
(method git-fetch)
@@ -288,7 +289,7 @@ wide set of telescopes.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "10y776rh6ww1zjk96cd497ipbr54q0wdd1g7ybsrffdbrzc6l8jx"))))
+ (base32 "03vrprrahhfp7jbl1apmpxmv05fb8lw469fnsnq7sajdhc3waifx"))))
(build-system meson-build-system)
(arguments
(list
@@ -631,7 +632,8 @@ accurately in real time at any rate desired.")
(arguments
(list
#:configure-flags
- #~(list (string-append "--with-bzip2=" #$(this-package-input "bzip2")))
+ #~(list "--enable-reentrant"
+ (string-append "--with-bzip2=" #$(this-package-input "bzip2")))
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'patch-paths
@@ -743,6 +745,54 @@ learning framework primarily developed and used for astronomical data
analysis.")
(license license:asl2.0)))
+(define-public cpl
+ (package
+ (name "cpl")
+ (version "7.3.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://ftp.eso.org/pub/dfs/pipelines/libraries/cpl/cpl-"
+ version ".tar.gz"))
+ (sha256
+ (base32 "083ppsa6ifc52m0s4ww4l9cajnh2f0y3s5bxaq31drihhrd2c355"))))
+ (build-system gnu-build-system)
+ (arguments
+ ;; pycpl expects to find a lib/esopipes-plugins directory. This is
+ ;; overruled by the PYESOREX_PLUGIN_DIR search path, but the default
+ ;; directory is still consulted and therefor needs to exist.
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'install 'create-plugins-directory
+ (lambda _
+ (mkdir-p (string-append #$output "/lib/esopipes-plugins")))))))
+ (native-inputs
+ (list automake
+ autoconf
+ libtool
+ pkg-config
+ perl))
+ (inputs
+ (list cfitsio
+ wcslib
+ fftw
+ fftwf))
+ (home-page "https://www.eso.org/sci/software/cpl/")
+ (synopsis "Common Pipeline Library for astronomical data reduction")
+ (description
+ "The @acronym{CPL, Common Pipeline Library} comprises a set of ISO-C
+libraries that provide a comprehensive, efficient and robust software toolkit
+to develop astronomical data-reduction tasks (known as recipes). These
+data-reduction tasks can then be executed manually by a user, or can be
+triggered in an automated data-reduction framework (known as pipelines) which
+are used at @acronym{ESO, European Southern Observatory} to monitor the health
+status of @acronym{VLT, Very Large Telescope} instruments, for quick-look data
+processing at the observatory, and the creation of data products available
+from the ESO archive facility.")
+ (license license:gpl2+)))
+
(define-public erfa
(package
(name "erfa")
@@ -768,6 +818,45 @@ Standards of Fundamental Astronomy} library published by the @acronym{IAU,
International Astronomical Union}.")
(license license:bsd-3)))
+(define-public esorex
+ (package
+ (name "esorex")
+ (version "3.13.10")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://ftp.eso.org/pub/dfs/pipelines/libraries/esorex/esorex-"
+ version ".tar.gz"))
+ (sha256
+ (base32 "1mkxjm2rnmviqfblnr4wwb3simvs7f5dly66qylvdfynvg3gk2d9"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ (list automake
+ autoconf
+ libtool
+ pkg-config
+ perl))
+ (inputs
+ (list cfitsio
+ wcslib
+ cpl))
+ (native-search-paths
+ (list (search-path-specification
+ (variable "ESOREX_PLUGIN_DIR")
+ (files '("lib/esopipes-plugins")))))
+ (home-page "https://www.eso.org/sci/software/cpl/esorex.html")
+ (synopsis "The European Southern Observatory Recipe Execution Tool")
+ (description
+ "EsoRex is the @acronym{European Southern Observatory,ESO} Recipe
+Execution Tool. It can list, configure and execute @acronym{Common Pipeline
+Library,CPL}-based recipes from the command line.")
+ ;; Set a rerlease-monitoring-url because the ftp directory includes
+ ;; prereleases that should not be refreshed to.
+ (properties `((release-monitoring-url
+ . "https://www.eso.org/sci/software/cpl/download.html")))
+ (license license:gpl2+)))
+
(define-public eye
(package
(name "eye")
@@ -798,6 +887,82 @@ applications of EyE include adaptive filtering, feature detection and cosmetic
corrections.")
(license license:cecill)))
+(define-public ginga
+ (package
+ (name "ginga")
+ (version "5.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "ginga" version))
+ (sha256
+ (base32 "0wv8fb8p8icsvkh2rn8jcxxx33kgac36gm9xqbgpm2z7z6m4haa7"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ ;; AssertionError: Not equal to tolerance rtol=1e-07, atol=0.0001
+ #:test-flags #~(list "-k" "not test_fwhm")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'check 'set-home
+ (lambda _
+ ;; Relax matplotlib warning: ... because the default path
+ ;; (/homeless-shelter/.config/matplotlib) is not a writable
+ ;; directory ...
+ (setenv "HOME" "/tmp"))))))
+ (native-inputs
+ (list python-attrs
+ python-pytest-doctestplus
+ python-pytest-astropy
+ python-pytest-astropy-header
+ python-setuptools-next))
+ (inputs
+ (list python-astropy
+ python-numpy
+ python-packaging
+ python-pillow
+ python-puremagic
+ python-pyyaml
+ python-qtpy
+ ;; [recomended]
+ opencv
+ python-astroquery
+ python-dateutil
+ python-exif-read
+ python-matplotlib
+ python-photutils
+ python-pillow-heif
+ python-scipy
+ ;; [qt6]
+ python-pyqt-6
+ ;; [pyside6]
+ python-pyside-6
+ ;; [tk,web]
+ python-pycairo
+ python-tornado))
+ (home-page "https://ejeschke.github.io/ginga/")
+ (synopsis "Scientific image viewer and toolkit for FITS files")
+ (description
+ "Ginga is a toolkit designed for building viewers for scientific image
+data in Python, visualizing 2D pixel data in numpy arrays. It can view
+astronomical data such as contained in files based on the FITS (Flexible Image
+Transport System) file format. It is written and is maintained by software
+engineers at the National Astronomical Observatory of Japan (NAOJ), the Space
+Telescope Science Institute (STScI), and other contributing entities.
+
+The Ginga toolkit centers around an image display object which supports
+zooming and panning, color and intensity mapping, a choice of several
+automatic cut levels algorithms and canvases for plotting scalable geometric
+forms. In addition to this widget, a general purpose \"reference\" FITS
+viewer is provided, based on a plugin framework. A fairly complete set of
+standard plugins are provided for features that we expect from a modern FITS
+viewer: panning and zooming windows, star catalog access, cuts, star
+pick/FWHM, thumbnails, etc.")
+(license license:bsd-3)))
+
+(define-public ginga-qt5
+ (deprecated-package "ginga-qt5" ginga))
+
(define-public glnemo2
(package
(name "glnemo2")
@@ -1093,7 +1258,7 @@ floating-point (no compression, LZW- or ZIP-compressed), FITS 8-bit, 16-bit,
(define-public indi
(package
(name "indi")
- (version "2.1.4")
+ (version "2.1.5")
(source
(origin
(method git-fetch)
@@ -1102,7 +1267,7 @@ floating-point (no compression, LZW- or ZIP-compressed), FITS 8-bit, 16-bit,
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "18rrp8mp0j126c1v3rpksyjkacq86520qmq4r5bkl78yf9dfxq3i"))))
+ (base32 "03qr5kvjr9dy8pwppn74mblkjxvm1nksbw2d9xinva8x4lxv8pry"))))
(build-system cmake-build-system)
(arguments
(list
@@ -1714,20 +1879,22 @@ model-fitting photometry or morphological analyses.")
#~(list "--numprocesses" (number->string (min 8 (parallel-job-count))))
#:phases
#~(modify-phases %standard-phases
+ ;; It fails to check SunPy's optional inputs versions.
+ (delete 'sanity-check)
(add-before 'check 'set-home
(lambda _
;; E PermissionError: [Errno 13] Permission denied:
;; '/homeless-shelter'
(setenv "HOME" "/tmp"))))))
(native-inputs
- (list python-pytest
+ (list nss-certs-for-test
+ python-pytest
python-pytest-astropy
python-pytest-cov
python-pytest-doctestplus
python-pytest-xdist
- python-setuptools
- python-setuptools-scm-next
- python-wheel))
+ python-setuptools-next
+ python-setuptools-scm-next))
(propagated-inputs
(list python-sunpy))
(home-page "https://aia.lmsal.com/")
@@ -1805,13 +1972,13 @@ Main features:
(define-public python-asdf
(package
(name "python-asdf")
- (version "4.3.0")
+ (version "4.4.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "asdf" version))
(sha256
- (base32 "0z88vzk3z9cdfafv8rbw4l6kz6panxamd21zafs6hj0w3zxpa7cn"))))
+ (base32 "0gincjs1vn6wxryazbkgmxy45cn1azb2yphj7nwg05yjwccn257p"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -1870,8 +2037,21 @@ implementation of the ASDF Standard.")
(build-system pyproject-build-system)
(arguments
(list
+ ;; tests: 4419 passed, 1 skipped
#:test-flags
- #~(list "--numprocesses" (number->string (parallel-job-count)))
+ #~(list "--numprocesses" (number->string (parallel-job-count))
+ "-k" (string-join
+ ;; AttributeError: 'AsdfFile' object has no attribute
+ ;; '_open_impl'
+ (list "not test_legacy_icrs_deseialize"
+ "test_read_examples[example0]"
+ "test_read_examples[example1]"
+ "test_read_examples[example2]"
+ "test_read_examples[example3]"
+ "test_read_examples[example4]"
+ "test_read_examples[example5]"
+ "test_read_examples[example6]")
+ " and not "))
#:phases
#~(modify-phases %standard-phases
(add-before 'check 'set-home-env
@@ -1889,7 +2069,7 @@ implementation of the ASDF Standard.")
python-asdf-coordinates-schemas
python-asdf-standard
python-asdf-transform-schemas
- python-astropy
+ python-astropy-minimal
python-numpy
python-packaging))
(home-page "https://github.com/astropy/asdf-astropy")
@@ -2425,13 +2605,13 @@ constraints (i.e., altitude, airmass, moon separation/illumination, etc.)
(define-public python-astropy
(package
(name "python-astropy")
- (version "7.0.1")
+ (version "7.1.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "astropy" version))
(sha256
- (base32 "0q74735xzrvxxpjv3sa8w68sfnziw1jilr70qba7qhxj8fsfwbrr"))
+ (base32 "1iakikzhw173djb2p24229ndpvzpbcanyg9h4k7viccm48r59wn8"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -2447,6 +2627,7 @@ constraints (i.e., altitude, airmass, moon separation/illumination, etc.)
(build-system pyproject-build-system)
(arguments
(list
+ ;; tests: 29347 passed, 373 skipped, 233 xfailed, 32 warnings
#:test-flags
#~(list "--pyargs" "astropy"
;; XXX: Tests are not thread save when they are more than 8.
@@ -2486,37 +2667,56 @@ constraints (i.e., altitude, airmass, moon separation/illumination, etc.)
pkg-config
python-cython-3
python-extension-helpers
- python-ipython
python-objgraph
- python-pandas
python-pytest
python-pytest-astropy
python-pytest-astropy-header
- python-pytest-mpl
+ python-pytest-doctestplus
python-pytest-xdist
- python-scikit-image
- python-setuptools
- python-setuptools-scm
+ python-setuptools-scm-next
python-sgp4
python-skyfield
- python-threadpoolctl
- python-timezonefinder
- python-wheel))
+ python-threadpoolctl))
(inputs
- (list expat wcslib))
+ (list expat
+ wcslib))
(propagated-inputs
(list python-astropy-iers-data
- python-configobj
- python-h5py
- python-jplephem
- python-matplotlib
+ python-configobj ;to replace custom module
python-numpy
python-packaging
- python-ply
- python-pyarrow
+ python-ply ;to replace custom module
python-pyerfa
python-pyyaml
- python-scipy))
+ ;; [recommended]
+ python-matplotlib
+ python-scipy
+ ;; [jupyter]
+ ;; python-ipydatagrid ;no packaged
+ python-ipykernel
+ python-ipython
+ python-ipywidgets
+ python-jupyter-core
+ python-pandas
+ ;; [optional]
+ python-asdf
+ python-asdf-astropy
+ python-beautifulsoup4
+ python-bleach
+ python-bottleneck
+ python-certifi
+ python-dask
+ python-fsspec
+ python-h5py
+ python-html5lib
+ python-jplephem
+ python-mpmath
+ python-pandas
+ python-pyarrow
+ python-pytz
+ python-s3fs
+ python-sortedcontainers
+ python-uncompresspy))
(home-page "https://www.astropy.org/")
(synopsis "Core package for Astronomy in Python")
(description
@@ -2586,13 +2786,13 @@ astronomy and astrophysics.")
(define-public python-astropy-iers-data
(package
(name "python-astropy-iers-data")
- (version "0.2025.7.21.0.41.39")
+ (version "0.2025.8.18.0.40.14")
(source
(origin
(method url-fetch)
(uri (pypi-uri "astropy_iers_data" version))
(sha256
- (base32 "14qa0h3jx5iawmb0cpwak1wna0jhjsi18zm4wmdicyb9kly7b0p4"))))
+ (base32 "1srqhva7snjaygfji4947q4lxhdqph1l97lxjvk4s8ls5w32yrhc"))))
(build-system pyproject-build-system)
(arguments
(list #:tests? #f)) ; no tests
@@ -2627,13 +2827,15 @@ celestial-to-terrestrial coordinate transformations.")
pkg-config
python-cython-3
python-extension-helpers
- python-setuptools
- python-setuptools-scm
- python-wheel))
+ python-setuptools-scm-next))
(propagated-inputs
- (modify-inputs (package-propagated-inputs python-astropy)
- (delete python-matplotlib
- python-scipy)))))
+ (list python-astropy-iers-data
+ python-configobj ;to replace custom module
+ python-numpy
+ python-packaging
+ python-ply ;to replace custom module
+ python-pyerfa
+ python-pyyaml))))
(define-public python-astroquery
(package
@@ -2780,44 +2982,32 @@ aim of simplifying and streamlining data conversion and standardization.")
(define-public python-bayesicfitting
(package
(name "python-bayesicfitting")
- (version "3.2.3")
+ (version "3.2.4")
(source
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/dokester/BayesicFitting")
- (commit (string-append "v" version))))
+ (url "https://github.com/dokester/BayesicFitting")
+ (commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0q7s7glf4b46vln67x7ggbpkbi4anyh3f3ldwafc2hggsrmx683q"))))
+ (base32 "1fdxrmcbjfpvz1czmvq4kz2scdiw77kyzsgv6c0isijk1hckgcik"))))
(build-system pyproject-build-system)
(arguments
(list
+ ;; XXX: To run full tests suite is quite expansive, select the one which
+ ;; is mentioned in <BayesicFitting/test/testall.csh>.
#:test-flags #~(list "-m" "unittest"
"discover"
- "-p" "Test*.py"
+ "-p" "TestUserModel.py"
"--top-level-directory" ".")
#:phases
#~(modify-phases %standard-phases
- ;; XXX: Some tests fail for some reason. Disable those tests for now.
- (add-before 'check 'disable-failing-tests
- (lambda _
- (substitute* "BayesicFitting/test/TestNestedSampler.py"
- ;; Fails with "AssertionError: False is not true".
- (("def test3")
- "def _test3")
- ;; Fails with "Thread Error" exception.
- (("def test1")
- "def _test1"))
- (substitute* "BayesicFitting/test/TestPhantomSampler.py"
- ;; Fails with "Thread Error" exception.
- (("def test1")
- "def _test1"))))
(replace 'check
(lambda* (#:key tests? test-flags #:allow-other-keys)
(when tests?
- (chdir "BayesicFitting/test")
- (apply invoke "python" test-flags)))))))
+ (with-directory-excursion "BayesicFitting/test"
+ (apply invoke "python" test-flags))))))))
(native-inputs
(list python-setuptools
python-wheel))
@@ -2827,7 +3017,7 @@ aim of simplifying and streamlining data conversion and standardization.")
python-matplotlib
python-numpy
python-scipy))
- (home-page "https://www.bayesicfitting.nl")
+ (home-page "https://dokester.github.io/BayesicFitting/")
(synopsis "Python Toolbox for Astronimical Bayesian fitting")
(description
"The BayesicFitting package is a python version of the the fitter classes
@@ -3012,7 +3202,7 @@ bad pixel tracking throughout the reduction process.")
(define-public python-cdflib
(package
(name "python-cdflib")
- (version "1.3.4")
+ (version "1.3.6")
(source
(origin
(method git-fetch) ; no tests in PyPI release
@@ -3021,7 +3211,7 @@ bad pixel tracking throughout the reduction process.")
(commit version)))
(file-name (git-file-name name version))
(sha256
- (base32 "1j0q0mgs6y5zyf3sjz49msp471kwl1la4rabga5pbyzfwfmxlihj"))))
+ (base32 "1rlzmwnlz77n8c62h050jc2njy10bfby671p3w7y6r6y6642xrdi"))))
(build-system pyproject-build-system)
(arguments
(list #:phases
@@ -3037,16 +3227,17 @@ bad pixel tracking throughout the reduction process.")
python-pytest
python-pytest-cov
python-pytest-remotedata
- python-setuptools
+ python-setuptools-next
python-setuptools-scm
- python-wheel
python-xarray))
(propagated-inputs
(list python-numpy))
(home-page "https://github.com/MAVENSDC/cdflib")
(synopsis "Python library to deal with NASA's CDF astronmical data format")
- (description "This package provides a Python @acronym{CDF, Computable
-Document Format} reader toolkit.
+ (description
+ "This package provides a Python @acronym{CDF, Computable Document Format}
+reader toolkit.
+
It provides the following functionality:
@itemize
@item Ability to read variables and attributes from CDF files
@@ -3464,7 +3655,7 @@ files and provide related services.")
(define-public python-czml3
(package
(name "python-czml3")
- (version "2.3.5")
+ (version "2.3.6")
(source
(origin
(method git-fetch)
@@ -3475,7 +3666,7 @@ files and provide related services.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "1c2nw1rdllla76z8gkfv2a1dqc302cayhhkqn3xn4b0vgsn1z1k2"))))
+ (base32 "1b8zsbixa0n1zqjs497i0f3v7fr0vgj7jxqdsiqg0g5l66gq0c4f"))))
(build-system pyproject-build-system)
(native-inputs
(list python-pytest
@@ -3499,13 +3690,13 @@ Cesium.")
(define-public python-dkist
(package
(name "python-dkist")
- (version "1.14.0")
+ (version "1.15.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "dkist" version))
(sha256
- (base32 "061hgrg69cpnn2j6gaivjbkxwiz6rpmyf6igxq58h82g4r7yl6ya"))))
+ (base32 "0j5jxf624s746syam472k2xz3m77p66z9d7c8rz19f0xv3792xql"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -3515,6 +3706,8 @@ Cesium.")
"--deselect=dkist/net/tests/test_client.py::test_fetch_with_headers")
#:phases
#~(modify-phases %standard-phases
+ ;; XXX: It fails to check SunPy's optional inputs versions.
+ (delete 'sanity-check)
(add-before 'check 'pre-check
(lambda _
(setenv "HOME" "/tmp"))))))
@@ -3532,12 +3725,16 @@ Cesium.")
python-pytest-mpl
python-pytest-remotedata
python-pytest-xdist
- python-setuptools
- python-setuptools-scm-next
- python-wheel))
+ python-setuptools-next
+ python-setuptools-scm-next))
(propagated-inputs
(list python-aiohttp
python-asdf
+ python-asdf-astropy
+ python-asdf-coordinates-schemas
+ python-asdf-standard
+ python-asdf-transform-schemas
+ python-asdf-wcs-schemas
python-astropy
python-dask
python-globus-sdk
@@ -3545,6 +3742,7 @@ Cesium.")
python-matplotlib
python-ndcube
python-numpy
+ python-packaging
python-parfive
python-platformdirs
python-sunpy
@@ -3559,7 +3757,7 @@ help you search, obtain and use DKIST data as part of your Python software.")
(define-public python-drizzle
(package
(name "python-drizzle")
- (version "2.1.0")
+ (version "2.1.1")
(source
(origin
(method git-fetch) ;no test data in PyPI archive
@@ -3568,7 +3766,7 @@ help you search, obtain and use DKIST data as part of your Python software.")
(commit version)))
(file-name (git-file-name name version))
(sha256
- (base32 "1adp5bhzgrw0csn5wvpij7hzm5wh3zr4nkvpq0a8lb93ifk6k5gh"))))
+ (base32 "0s2vydy3fp6hvlzxdhx6my4js3vc7vpvy3hpgj4kjkl0r47s9vpx"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -3586,8 +3784,7 @@ help you search, obtain and use DKIST data as part of your Python software.")
python-gwcs
python-pytest
python-setuptools-next
- python-setuptools-scm
- python-wheel))
+ python-setuptools-scm))
(propagated-inputs
(list python-numpy))
(home-page "https://github.com/spacetelescope/drizzle")
@@ -3701,19 +3898,21 @@ used with local NetDRMS sites.")
(define-public python-dust-extinction
(package
(name "python-dust-extinction")
- (version "1.5")
+ (version "1.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "dust_extinction" version))
(sha256
- (base32 "0f0g6gh4kj83xfv0cdp30dahs80pnhsj7c6ryz3f59qf6d5zqard"))))
+ (base32 "01iap2k49izn53v23kwkkpr5j5xhgk79xlwx6cb6h5ng29274nq5"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest-astropy
- python-wheel))
+ (list python-pytest
+ python-pytest-doctestplus
+ python-setuptools-next))
(propagated-inputs
- (list python-astropy python-scipy))
+ (list python-astropy
+ python-scipy))
(home-page "http://dust-extinction.readthedocs.io/")
(synopsis "Interstellar Dust Extinction Models")
(description
@@ -3721,6 +3920,49 @@ used with local NetDRMS sites.")
implemented using the astropy.modeling framework.")
(license license:bsd-3)))
+(define-public python-edps
+ (package
+ (name "python-edps")
+ (version "1.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://ftp.eso.org/pub/dfs/pipelines/libraries/edps/edps-"
+ version ".tar.gz"))
+ (sha256
+ (base32 "0wigb3ni663a8fp9wdsnlbg789y2898j3x523isb68mnq72fqblw"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:tests? #f)) ;no tests in tarball
+ (native-inputs
+ (list python-pytest
+ python-setuptools-next))
+ (propagated-inputs
+ (list python-astropy
+ python-fastapi
+ python-networkx
+ python-pyyaml
+ python-requests
+ python-uvicorn
+ python-tinydb
+ python-frozendict
+ python-jinja2
+ python-pydantic-2
+ python-psutil))
+ (home-page "https://www.eso.org/sci/software/edps.html")
+ (synopsis "ESO's Data Processing System")
+ (description
+ "@acronym{European Southern Observatory Data Processing System EDPS} is a
+system to automatically organise data from ESO instruments for pipeline
+processing and running the pipeline on these data. It is used for quality
+control at ESO. The current public release is a beta version without a GUI.
+A GUI is being developed and the system is meant to eventually replace the
+older EsoReflex environment.")
+ (properties '((upstream-name . "edps")))
+ (license license:bsd-3)))
+
(define-public python-ephem
(package
(name "python-ephem")
@@ -3780,7 +4022,7 @@ tools for astronomers.")
(define-public python-extinction
(package
(name "python-extinction")
- (version "0.4.7")
+ (version "0.4.8")
(source
(origin
(method git-fetch) ; No tests in PyPI
@@ -3789,7 +4031,7 @@ tools for astronomers.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "04k9mfbijf2nwzhh9sxpkswxk7077d7gbc6nq4hjb51h8rslcjg2"))))
+ (base32 "1dcb4c1rjv0msb3kagpgrj2xlb5spv8j76giy14vxkvz33lm4pz7"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -3797,8 +4039,7 @@ tools for astronomers.")
(native-inputs
(list python-cython
python-pytest
- python-setuptools
- python-wheel))
+ python-setuptools-next))
(propagated-inputs
(list python-numpy))
(home-page "https://github.com/sncosmo/extinction")
@@ -3943,79 +4184,17 @@ Python.")
(license license:bsd-2)))
(define-public python-ginga
- (package
+ (package/inherit ginga
(name "python-ginga")
- (version "5.3.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "ginga" version))
- (sha256
- (base32 "04ag7v2srpl0scd3x27bbzkpfih98rrxhqvrsxy03l84g3zzrj6k"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- ;; AssertionError: Not equal to tolerance rtol=1e-07, atol=0.0001
- #:test-flags #~(list "-k" "not test_fwhm")
- #:phases
- #~(modify-phases %standard-phases
- (add-before 'check 'set-home
- (lambda _
- ;; Relax matplotlib warning: ... because the default path
- ;; (/homeless-shelter/.config/matplotlib) is not a writable
- ;; directory ...
- (setenv "HOME" "/tmp"))))))
- (native-inputs
- (list python-attrs
- python-docutils
- python-pytest-astropy
- python-pytest-astropy-header
- python-tornado))
+ (inputs '())
(propagated-inputs
- (list opencv
- python-astropy
- python-astroquery
- python-dateutil
- python-exif-read
- python-fitsio
- python-magic
- python-matplotlib
+ (list python-astropy
python-numpy
python-packaging
- python-photutils
python-pillow
python-puremagic
python-pyyaml
- python-qtpy
- python-scipy
- python-tomli))
- (home-page "https://ejeschke.github.io/ginga/")
- (synopsis "Scientific image viewer and toolkit for FITS files")
- (description
- "Ginga is a toolkit designed for building viewers for scientific image
-data in Python, visualizing 2D pixel data in numpy arrays. It can view
-astronomical data such as contained in files based on the FITS (Flexible Image
-Transport System) file format. It is written and is maintained by software
-engineers at the National Astronomical Observatory of Japan (NAOJ), the Space
-Telescope Science Institute (STScI), and other contributing entities.
-
-The Ginga toolkit centers around an image display object which supports
-zooming and panning, color and intensity mapping, a choice of several
-automatic cut levels algorithms and canvases for plotting scalable geometric
-forms. In addition to this widget, a general purpose \"reference\" FITS
-viewer is provided, based on a plugin framework. A fairly complete set of
-standard plugins are provided for features that we expect from a modern FITS
-viewer: panning and zooming windows, star catalog access, cuts, star
-pick/FWHM, thumbnails, etc.")
-(license license:bsd-3)))
-
-(define-public ginga-qt5
- (package/inherit python-ginga
- (name "ginga-qt5")
- (inputs
- (modify-inputs (package-inputs python-ginga)
- (prepend python-pyqt)))
- (synopsis "Qt5 image viewer build based on python-ginga library")))
+ python-qtpy))))
(define-public python-glue-astronomy
(package
@@ -4064,19 +4243,19 @@ astronomy-specific functionality")
(define-public python-glue-core
(package
(name "python-glue-core")
- (version "1.22.2")
+ (version "1.23.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "glue_core" version))
(sha256
- (base32 "0abv3snac3i78mc3ai29hbpamfqhig5ldlb9jpnn4sxpm2p7s5rc"))))
+ (base32 "0g79gw6ffz4bsby5kazv9a1mbrwa6b75kkal2bi2wjwz855nqsh6"))))
(build-system pyproject-build-system)
(native-inputs
(list python-pytest
python-pytest-mpl
- python-setuptools-scm
- python-wheel))
+ python-setuptools-next
+ python-setuptools-scm-next))
(propagated-inputs
(list python-astrodendro
python-astropy
@@ -4107,16 +4286,16 @@ across many files.")
(define-public python-glue-qt
(package
(name "python-glue-qt")
- (version "0.3.3")
+ (version "0.4.0")
(source
(origin
(method git-fetch) ; no fresh release PyPI
(uri (git-reference
- (url "https://github.com/glue-viz/glue-qt")
- (commit (string-append "v" version))))
+ (url "https://github.com/glue-viz/glue-qt")
+ (commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "14qzxszpzjz57bl75ybj8jlx73cd8lsgbb8id9gx4anq9sydzgqj"))))
+ (base32 "1ay0y0g2vgy2mn1dk9yxim0449lnny9fd7lplqqwy9vxhkh4gnxp"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -4125,17 +4304,16 @@ across many files.")
(add-before 'build 'set-env-version
(lambda _
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)))
- (add-before 'check 'prepare-x
- (lambda _
- (system "Xvfb &")
- (setenv "DISPLAY" ":0")
- (setenv "HOME" "/tmp"))))))
+ (add-before 'check 'prepare-x
+ (lambda _
+ (system "Xvfb &")
+ (setenv "DISPLAY" ":0")
+ (setenv "HOME" "/tmp"))))))
(native-inputs
(list python-objgraph
python-pytest
- python-setuptools
- python-setuptools-scm
- python-wheel
+ python-setuptools-next
+ python-setuptools-scm-next
xorg-server-for-tests))
(propagated-inputs
(list python-astropy
@@ -4234,16 +4412,21 @@ specifically pulsar timing array signals.")
(define-public python-gwcs
(package
(name "python-gwcs")
- (version "0.25.1")
+ (version "0.25.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "gwcs" version))
(sha256
- (base32 "0zr2mmad7qk1almw3kc3xqdhfkxbjg7yfc5a9cif4l0m8r11gr0x"))))
+ (base32 "12hs7qa03blpxp2i97n3wckvih7zcmpm4k4ia0p3hird49qq7l44"))))
(build-system pyproject-build-system)
(arguments
(list
+ ;; tests: 1021 passed, 10 skipped, 1 deselected, 9 warnings
+ #:test-flags
+ ;; XXX: This is worth checking out more closely:
+ ;; Not equal to tolerance rtol=1e-07, atol=0.
+ #~(list "-k" "not test_fitswcs_imaging[fits_wcs_imaging_simple2]")
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'relax-requirements
@@ -4254,10 +4437,8 @@ specifically pulsar timing array signals.")
(native-inputs
(list python-pytest
python-pytest-astropy
- python-pyyaml
python-setuptools-next
- python-setuptools-scm-next
- python-wheel))
+ python-setuptools-scm-next))
(propagated-inputs
(list python-asdf
python-asdf-astropy
@@ -4453,7 +4634,7 @@ scheme and builds with the HEALPix C++ library.")
python-setuptools
python-wheel))
(propagated-inputs
- (list python-astropy
+ (list python-astropy-6
python-emcee
python-h5py
python-lenstronomy
@@ -4555,17 +4736,18 @@ observationally-derived galaxy merger catalogs.")
(define-public python-irispy-lmsal
(package
(name "python-irispy-lmsal")
- (version "0.3.0")
+ (version "0.3.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "irispy_lmsal" version))
(sha256
- (base32 "0pqwgg89qq75nz7201535ixkcjqbqbdv3qmhcig2h2ah9fpcfpyy"))))
+ (base32 "037ip97kb5sq98shgw4d1c5x7lpbzksampfw7d97x59zbvbmvwhn"))))
(build-system pyproject-build-system)
(arguments
(list
#:test-flags
+ ;; See: <https://github.com/LM-SAL/irispy-lmsal/issues/83>.
;; Expected:
;; np.float64(0.33)
;; Got:
@@ -4573,6 +4755,8 @@ observationally-derived galaxy merger catalogs.")
#~(list "--deselect=irispy/obsid.py::irispy.obsid.ObsID")
#:phases
#~(modify-phases %standard-phases
+ ;; XXX: It fails to check SunPy's optional inputs versions.
+ (delete 'sanity-check)
(add-before 'check 'set-home
(lambda _
;; E PermissionError: [Errno 13] Permission denied:
@@ -4580,10 +4764,10 @@ observationally-derived galaxy merger catalogs.")
(setenv "HOME" "/tmp"))))))
(native-inputs
(list ffmpeg
+ python-pooch
python-pytest-astropy
- python-setuptools
- python-setuptools-scm
- python-wheel))
+ python-setuptools-next
+ python-setuptools-scm))
(propagated-inputs
(list python-dkist
python-mpl-animators
@@ -4670,6 +4854,8 @@ milliarcsecond).")
(substitute* "pyproject.toml"
;; drizzle>=2.0.1,<2.1.0
((">=2.0.1,<2.1.0") ">=2.0.1")
+ ;; stcal>=1.14.1,<1.15.0
+ ((">=1.14.1,<1.15.0") "")
;; scipy>=1.14.1
(("1.14.1") "1.12.0")
;; XXX: Can't detect opencv-python version. The input opencv
@@ -4894,6 +5080,7 @@ astronomical tables
(build-system pyproject-build-system)
(arguments
(list
+ ;; tests: 1338 passed, 350 warnings
#:test-flags
#~(list "--numprocesses" (number->string (parallel-job-count))
;; TypeError: SparseSolverBase.__init__() got an
@@ -4922,9 +5109,14 @@ astronomical tables
;; TypeError: SLIT_Starlets.function_2d() got an
;; unexpected keyword argument 'n_pix_x'
"test_pixelbased_modelling"
- ;; AssertionError: Arrays are not almost equal to 1
- ;; decimals ACTUAL: 0.8382375738251702
- "test_run_fit")
+ ;; XXX: These are precision errors in tests which
+ ;; need to be checked properly: AssertionError:
+ ;; Arrays are not almost equal ...
+ "test_run_fit"
+ "test_multiplane"
+ ;; ModuleNotFoundError: No module named
+ ;; 'astropy.cosmology._utils'
+ "test_short_and_laconic")
" and not "))))
(native-inputs
(list python-colossus
@@ -5267,7 +5459,7 @@ Carlo.")
(build-system pyproject-build-system)
(arguments
(list
- ;; 393 passed, 7 skipped, 31 deselected, 10 xfailed
+ ;; tests: 393 passed, 7 skipped, 10 xfailed
#:test-flags
#~(list "--numprocesses" (number->string (parallel-job-count))
"-k" (string-join
@@ -5296,7 +5488,8 @@ Carlo.")
;; Permission denied: '/homeless-shelter'
(setenv "HOME" "/tmp"))))))
(native-inputs
- (list python-dask
+ (list nss-certs-for-test
+ python-dask
python-pytest
python-pytest-astropy
python-pytest-mpl
@@ -5437,7 +5630,7 @@ of astronomical sources.")
(define-public python-pint-pulsar
(package
(name "python-pint-pulsar")
- (version "1.1.3")
+ (version "1.1.4")
(source
(origin
(method git-fetch) ; no tests data in the PyPI tarball
@@ -5446,7 +5639,7 @@ of astronomical sources.")
(commit version)))
(file-name (git-file-name name version))
(sha256
- (base32 "0n66z7v30q1981hx4q5vy3mibrh453gak8dd938038r5mwddya3f"))))
+ (base32 "0522p1gns52vzgj1l89s1s3idi40910hv4dpbhy4r1ijmwfb3kdg"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -5662,6 +5855,39 @@ position-frequency slice.")
(list python-setuptools
python-wheel)))))
+(define-public python-pycpl
+ (package
+ (name "python-pycpl")
+ (version "1.0.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://ftp.eso.org/pub/dfs/pipelines/libraries/pycpl/pycpl-"
+ version ".tar.gz"))
+ (sha256
+ (base32 "0kfzx4k8z2k0ms6q8f16wqr120drd8fqrw9qpnks419pyc8cr5xp"))))
+ (build-system pyproject-build-system)
+ (native-inputs
+ (list cmake-minimal
+ pybind11
+ python-pandas
+ python-pytest
+ python-scipy
+ python-setuptools-next))
+ (inputs
+ (list cpl))
+ (propagated-inputs
+ (list python-astropy))
+ (home-page "https://www.eso.org/sci/software/pycpl/pycpl-site/")
+ (synopsis "Python bindings for ESO's CPL")
+ (description
+ "PyCPL provides Python3 language bindings for the complete programming
+API of the @acronym{European Southern Observatory, ESO} @acronym{Common
+Pipeline Library, CPL} toolkit, including the CPL plugin interface.")
+ (properties '((upstream-name . "pycpl")))
+ (license license:bsd-3)))
+
(define-public python-pyerfa
(package
(name "python-pyerfa")
@@ -5712,21 +5938,54 @@ Astronomical Union (IAU). All C routines are wrapped as Numpy universal
functions, so that they can be called with scalar or array inputs.")
(license license:bsd-3)))
+(define-public python-pyesorex
+ (package
+ (name "python-pyesorex")
+ (version "1.0.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://ftp.eso.org/pub/dfs/pipelines/libraries/pyesorex/pyesorex-"
+ version ".tar.gz"))
+ (sha256
+ (base32 "1ynb9q9aj51mdva1b76fkz7mlw5q8nlfs8f5f70bhila8iincjca"))))
+ (build-system pyproject-build-system)
+ (native-inputs
+ (list python-pytest
+ python-setuptools-next))
+ (propagated-inputs
+ (list python-pycpl))
+ (native-search-paths
+ (list (search-path-specification
+ (variable "PYESOREX_PLUGIN_DIR")
+ (files '("lib/esopipes-plugins")))))
+ (home-page "https://www.eso.org/sci/software/pycpl/pycpl-site/")
+ (synopsis "Alternative Python CLI for ESO's Rex")
+ (description
+ "PyEsoRex is a command line tool which can serve as a drop-in replacement
+of EsoRex, which can execute both, existing pipeline recipes implemented using
+the @acronym{Common Pipeline Library, CPL} C API, and recipes implemented
+using the PyCPL Python API.")
+ (properties '((upstream-name . "pyesorex")))
+ (license license:bsd-3)))
+
(define-public python-pyhalo
(package
(name "python-pyhalo")
- (version "1.4.1")
+ (version "1.4.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyhalo" version))
(sha256
- (base32 "06zdcr82fzzn6zkjralmv9qv7qjyjkni1p1rg60bvl8h013v3xp6"))))
+ (base32 "1yh5acjiwkfm4sjiydksg9187k3lwsads1p9zy0ck7wb6jwxrj81"))))
(build-system pyproject-build-system)
(arguments
(list
- ;; ValueError: The truth value of an array with more than one element is
- ;; ambiguous. Use a.any() or a.all()
+ ;; tests: 194 passed, 3 deselected, 119 warnings
+ ;; ValueError: The truth value of an array with more than one element
+ ;; is ambiguous. Use a.any() or a.all()
#:test-flags #~(list "-k" "not test_vmax")
#:phases
#~(modify-phases %standard-phases
@@ -6060,6 +6319,8 @@ end products of specific X-ray observatories.")
#~(list "--numprocesses" (number->string (parallel-job-count)))
#:phases
#~(modify-phases %standard-phases
+ ;; XXX: It fails to check SunPy's optional inputs versions.
+ (delete 'sanity-check)
(add-before 'check 'set-home-env
(lambda _
;; Tests require HOME to be set.
@@ -6120,102 +6381,103 @@ PSF} describing how the optical system spreads light from sources.")
(license license:expat)))
(define-public python-romancal
- ;; The compatible version is not released yet, use the latest commit.
- (let ((commit "ae864a407fc16001d3a0370779caa381f994f718")
- (revision "0"))
- (package
- (name "python-romancal")
- (version (git-version "0.19.0" revision commit))
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/spacetelescope/romancal")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "0dxgwy6qva8ss7xb6hlkck6kysikgmn0byprvj4kx1l82gm1sk0g"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags
- #~(list "--color=no"
- "--numprocesses" (number->string (min 8 (parallel-job-count)))
- ;; XXX: Tests requiring network access or additional setup,
- ;; check how to run them locally.
- "--ignore=romancal/assign_wcs/tests/test_wcs.py"
- "--ignore=romancal/dark_current/tests/test_dark.py"
- "--ignore=romancal/dq_init/tests/test_dq_init.py"
- "--ignore=romancal/flatfield/tests/test_flatfield.py"
- "--ignore=romancal/flux/tests/test_flux_step.py"
- "--ignore=romancal/lib/engdb/tests/test_engdb_tools.py"
- "--ignore=romancal/linearity/tests/test_linearity.py"
- "--ignore=romancal/multiband_catalog/tests/test_multiband_catalog.py"
- "--ignore=romancal/orientation/tests/test_set_telescope_pointing.py"
- "--ignore=romancal/photom/tests/test_photom.py"
- "--ignore=romancal/ramp_fitting/tests/test_ramp_fit_cas22.py"
- "--ignore=romancal/ramp_fitting/tests/test_ramp_fit_likelihood.py"
- "--ignore=romancal/refpix/tests/test_step.py"
- "--ignore=romancal/resample/tests/test_resample.py"
- "--ignore=romancal/saturation/tests/test_saturation.py"
- "--ignore=romancal/skycell/tests/test_skycell.py"
- "--ignore=romancal/skycell/tests/test_skycell_match.py"
- "--ignore=romancal/skymatch/tests/test_skymatch.py"
- "--ignore=romancal/source_catalog/tests/test_psf.py"
- "--ignore=romancal/source_catalog/tests/test_source_catalog.py"
- "--ignore=romancal/stpipe/tests/test_core.py"
- "--ignore=romancal/tweakreg/tests/test_tweakreg.py")
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'relax-requirements
- (lambda _
- (substitute* "pyproject.toml"
- ;; XXX: scipy >=1.14.1
- ((" >=1.14.1") ""))))
- (add-before 'build 'set-version
- (lambda _
- (setenv "SETUPTOOLS_SCM_PRETEND_VERSION"
- #$(version-major+minor+point version)))))))
- (native-inputs
- (list nss-certs-for-test
- python-ci-watson
- python-deepdiff
- ;; python-edp ;not packaged
- python-pytest
- python-pytest-astropy
- python-pytest-xdist
- python-setuptools-next
- python-setuptools-scm
- python-stpreview
- python-wheel))
- (propagated-inputs
- (list python-asdf
- python-asdf-astropy
- python-astropy
- python-crds
- python-drizzle
- python-gwcs
- python-jsonschema
- python-numpy
- python-pandas
- python-photutils
- python-pyarrow
- python-pyparsing
- python-requests
- python-roman-datamodels
- python-scipy
- python-spherical-geometry
- python-stcal
- python-stpipe
- python-stpsf
- python-stsci-imagestats
- python-tweakwcs))
- (home-page "https://github.com/spacetelescope/romancal")
- (synopsis "Nancy Grace Roman Space Telescope observations processing library")
- (description
- "This package implements a functionality for calibration of science
+ (package
+ (name "python-romancal")
+ (version "0.20.2")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/spacetelescope/romancal")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "16aa8ylq6281k1z3yz0lzbw0ca9l7fgci1s14jqd9ymcmssnf4q4"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ #~(list "--color=no"
+ "--numprocesses" (number->string (min 8 (parallel-job-count)))
+ ;; XXX: Tests requiring network access or additional setup,
+ ;; check how to run them locally.
+ "--ignore=romancal/assign_wcs/tests/test_wcs.py"
+ "--ignore=romancal/dark_current/tests/test_dark.py"
+ "--ignore=romancal/dq_init/tests/test_dq_init.py"
+ "--ignore=romancal/flatfield/tests/test_flatfield.py"
+ "--ignore=romancal/flux/tests/test_flux_step.py"
+ "--ignore=romancal/lib/engdb/tests/test_engdb_tools.py"
+ "--ignore=romancal/linearity/tests/test_linearity.py"
+ "--ignore=romancal/multiband_catalog/tests/test_multiband_catalog.py"
+ "--ignore=romancal/orientation/tests/test_set_telescope_pointing.py"
+ "--ignore=romancal/photom/tests/test_photom.py"
+ "--ignore=romancal/ramp_fitting/tests/test_ramp_fit_cas22.py"
+ "--ignore=romancal/ramp_fitting/tests/test_ramp_fit_likelihood.py"
+ "--ignore=romancal/refpix/tests/test_step.py"
+ "--ignore=romancal/resample/tests/test_resample.py"
+ "--ignore=romancal/saturation/tests/test_saturation.py"
+ "--ignore=romancal/skycell/tests/test_skycell.py"
+ "--ignore=romancal/skycell/tests/test_skycell_match.py"
+ "--ignore=romancal/skymatch/tests/test_skymatch.py"
+ "--ignore=romancal/source_catalog/tests/test_psf.py"
+ "--ignore=romancal/source_catalog/tests/test_source_catalog.py"
+ "--ignore=romancal/stpipe/tests/test_core.py"
+ "--ignore=romancal/tweakreg/tests/test_tweakreg.py")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'relax-requirements
+ (lambda _
+ (substitute* "pyproject.toml"
+ ;; XXX: scipy >=1.14.1
+ ((" >=1.14.1") "")
+ (("stsci.imagestats >= 1.8.3")
+ ;; Cant' find the version even if it's added.
+ "stsci.imagestats"))))
+ (add-before 'build 'set-version
+ (lambda _
+ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION"
+ #$(version-major+minor+point version)))))))
+ (native-inputs
+ (list nss-certs-for-test
+ python-ci-watson
+ python-deepdiff
+ ;; python-edp ;not packaged
+ python-pytest
+ python-pytest-astropy
+ python-pytest-xdist
+ python-setuptools-next
+ python-setuptools-scm
+ python-stpreview))
+ (propagated-inputs
+ (list python-asdf
+ python-asdf-astropy
+ python-astropy
+ python-crds
+ python-drizzle
+ python-gwcs
+ python-jsonschema
+ python-numpy
+ python-pandas
+ python-photutils
+ python-pyarrow
+ python-requests
+ python-roman-datamodels
+ python-scipy
+ python-spherical-geometry
+ python-stcal
+ python-stpipe
+ python-stsci-imagestats
+ python-tweakwcs
+ ;; [sdp]
+ python-pysiaf
+ ;; python-roman-photoz ;not packaged
+ python-stpreview))
+ (home-page "https://github.com/spacetelescope/romancal")
+ (synopsis "Nancy Grace Roman Space Telescope observations processing library")
+ (description
+ "This package implements a functionality for calibration of science
observations from the Nancy Grace Roman Space Telescope.")
- (license license:bsd-3))))
+ (license license:bsd-3)))
(define-public python-sbpy
(package
@@ -6341,17 +6603,24 @@ library with bug fixtures.")
(define-public python-sgp4
(package
(name "python-sgp4")
- (version "2.24")
+ (version "2.25")
(source
(origin
(method url-fetch)
(uri (pypi-uri "sgp4" version))
(sha256
- (base32 "0ll3gxjf697llh6nvisxnj2h4hl23nq1m24ymsykz8kf4ygj8man"))))
+ (base32 "0x06mxdmk2rsbp7ymjvvbj8pwkf4y2w6g8p0znw9zmi5rinxr7p1"))))
(build-system pyproject-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "python" "-m" "sgp4.tests")))))))
(native-inputs
- (list python-setuptools
- python-wheel))
+ (list python-setuptools-next))
(propagated-inputs
(list python-numpy))
(home-page "https://github.com/brandon-rhodes/python-sgp4")
@@ -6702,13 +6971,13 @@ but has evolved to support other missions as well.")
(define-public python-space-dolphin
(package
(name "python-space-dolphin")
- (version "1.1.2")
+ (version "1.1.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "space_dolphin" version))
(sha256
- (base32 "0qxpb6ss0w4f6mnisri3i3a5g5dfa12a7iimdchzqql7r53x7xiq"))))
+ (base32 "0qsdaqbdf51ai54w4d483bf9kxjjcsr5fiqs861z7k7s7zrjms0r"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -7149,13 +7418,13 @@ of axis order, spatial projections, and spectral units that exist in the wild.
(define-public python-specutils
(package
(name "python-specutils")
- (version "2.0.0")
+ (version "2.1.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "specutils" version))
(sha256
- (base32 "0ngq4r7awkbwdbi7a8isj6iw66xk3s26yjp0c0qvl6wvf9hby59r"))))
+ (base32 "02yf0s0qcwhj7qn0l3glvdlap4pr15s4hm2ki14py2k5sfv8j0ab"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -7187,10 +7456,9 @@ of axis order, spatial projections, and spectral units that exist in the wild.
(native-inputs
(list python-matplotlib
python-pytest-astropy
- python-setuptools
+ python-setuptools-next
python-setuptools-scm
- python-spectral-cube
- python-wheel))
+ python-spectral-cube))
(propagated-inputs
(list python-asdf
python-asdf-astropy
@@ -7377,13 +7645,13 @@ and CAS statistics), as well as fitting 2D Sérsic profiles.")
(define-public python-stcal
(package
(name "python-stcal")
- (version "1.14.1")
+ (version "1.15.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "stcal" version))
(sha256
- (base32 "1y3w1nlb4f56f9w7ql1al35mj2xv53cagrnpqknl1kh6r6qg7pqj"))))
+ (base32 "0q27dw3gsv03kik63rclpg0si8qb2k7l8lhszi2b1948kb0spwnn"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -7900,13 +8168,13 @@ implementation package such as asdf-astropy.")
(define-public python-rad
(package
(name "python-rad")
- (version "0.26.0")
+ (version "0.27.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "rad" version))
(sha256
- (base32 "0vxkjsj9bdl84076lbric4jn531jv46i2wwfxak50i5mik8r7zjg"))))
+ (base32 "04vzqkcw6la5n2jw92khmqnizs2nf5vb27nknn3c6wj1jwfwl6bv"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -7925,8 +8193,7 @@ implementation package such as asdf-astropy.")
python-pytest-doctestplus
python-semantic-version
python-setuptools-next
- python-setuptools-scm
- python-wheel))
+ python-setuptools-scm))
(propagated-inputs
(list python-asdf
python-asdf-astropy))
@@ -8023,16 +8290,17 @@ channels
(define-public python-roman-datamodels
(package
(name "python-roman-datamodels")
- (version "0.26.0")
+ (version "0.27.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "roman_datamodels" version))
(sha256
- (base32 "0kiv139q6q3pjlalb16nqcyib8hmd9svr4y24s7g0as08x09d7zl"))))
+ (base32 "1631jpv7mcrcka6bfxp04ih43wlm9pmqsqxckqyv6y9jgsipjxy3"))))
(build-system pyproject-build-system)
(arguments
(list
+ ;; tests: 4185 passed, 1 skipped, 1 xfailed
#:test-flags
#~(list "--numprocesses" (number->string (parallel-job-count)))
#:phases
@@ -8141,20 +8409,19 @@ task}.")
(define-public python-stsci-skypac
(package
(name "python-stsci-skypac")
- (version "1.0.10")
+ (version "1.0.11")
(source
(origin
(method url-fetch)
(uri (pypi-uri "stsci_skypac" version))
(sha256
- (base32 "0amfknfxzrmia0d8x83i9h2v5760ynvfgfs0kzpb1ib0vyaci671"))))
+ (base32 "1pfgcgcgwvlil4m0v7d6raya70s74knimfh8yn634kapf24xxy1k"))))
(build-system pyproject-build-system)
(arguments
(list #:tests? #f)) ; no tests in PyPI or git
(native-inputs
- (list python-setuptools
- python-setuptools-scm-next
- python-wheel))
+ (list python-setuptools-next
+ python-setuptools-scm-next))
(propagated-inputs
(list python-astropy
python-numpy
@@ -8379,7 +8646,8 @@ Telescope, HST}).")
;; For tests: Permission denied: '/homeless-shelter'
(setenv "HOME" "/tmp"))))))
(native-inputs
- (list python-dask
+ (list nss-certs-for-test
+ python-dask
python-pytest-astropy
python-pytest-mpl
python-pytest-xdist
@@ -8422,16 +8690,16 @@ Telescope, HST}).")
(lambda _
(setenv "HOME" "/tmp"))))))
(native-inputs
- (list python-pytest
+ (list nss-certs-for-test
+ python-pytest
python-pytest-arraydiff
python-pytest-doctestplus
python-pytest-xdist
python-reproject
- python-setuptools
+ python-setuptools-next
python-setuptools-scm-next
python-streamtracer
- python-sympy
- python-wheel))
+ python-sympy))
(propagated-inputs
(list python-astropy
python-numpy
@@ -8510,23 +8778,30 @@ SunPy.")
(define-public python-sunpy
(package
(name "python-sunpy")
- (version "6.1.1")
+ (version "7.0.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "sunpy" version))
(sha256
- (base32 "1nqk5q4gd7w59zsps8gyzh6r1mmpzia0z5494za6na5vn2qsc2f6"))))
+ (base32 "1q7z74jf9r65clrq7g6mqqap6455krfp4mxbjs3039jk5gs8d47m"))))
(build-system pyproject-build-system)
(arguments
(list
+ ;; tests: 2439 passed, 3 xfailed, 35 warnings
#:test-flags
#~(list "--pyargs" "sunpy"
"--numprocesses" (number->string (min 8 (parallel-job-count)))
- ;; Test introduces a time bomb and fails with error: ValueError:
+ "-m" "not remote_data"
+ ;; [1] Test introduces a time bomb and fails with error: ValueError:
;; interpolating from IERS_Auto using predictive values that are
;; more than 30.0 days old.
- "-k" "not test_print_params")
+ ;; [2,3] Failed: DID NOT RAISE <class 'ModuleNotFoundError'>
+ "-k" (string-join
+ (list "not test_print_params" ;1
+ "test_main_nonexisting_module" ;2
+ "test_main_stdlib_module") ;3
+ " and not "))
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'remove-test-files
@@ -8546,20 +8821,19 @@ SunPy.")
(with-directory-excursion "/tmp"
(apply invoke "pytest" "-vv" test-flags))))))))
(native-inputs
- (list opencv ; For tests, includes OpenCV-Python
+ (list nss-certs-for-test
+ opencv ; For tests, includes OpenCV-Python
python-aiohttp
python-extension-helpers
python-hvpy
python-jplephem
;; python-mplcairo ; Not packed yet in Guix
- python-packaging
python-pytest-astropy
python-pytest-mock
python-pytest-mpl
python-pytest-xdist
- python-setuptools
- python-setuptools-scm-next
- python-wheel))
+ python-setuptools-next
+ python-setuptools-scm-next))
(propagated-inputs
(list python-asdf
python-asdf-astropy
@@ -8576,10 +8850,12 @@ SunPy.")
python-matplotlib
python-mpl-animators
python-numpy
+ python-packaging
python-pandas
python-parfive
python-pyerfa
python-reproject
+ python-requests-next
python-scikit-image
python-scipy
;; python-spiceypy ; Not packed yet in Guix, long journey.
@@ -8610,7 +8886,8 @@ to the SolarSoft data analysis environment.")
python-fsspec
python-mpl-animators
python-parfive
- python-pyerfa)))))
+ python-pyerfa
+ python-requests-next)))))
(define-public python-sunpy-soar
(package
@@ -8653,13 +8930,16 @@ to the SolarSoft data analysis environment.")
" and not "))
#:phases
#~(modify-phases %standard-phases
+ ;; XXX: It fails to check SunPy's optional inputs versions.
+ (delete 'sanity-check)
(add-before 'check 'set-home-env
(lambda _
;; Tests require HOME to be set.
;; Permission denied: '/homeless-shelter'
(setenv "HOME" "/tmp"))))))
(native-inputs
- (list python-pytest
+ (list nss-certs-for-test
+ python-pytest
python-pytest-doctestplus
python-responses
python-setuptools
@@ -8680,31 +8960,20 @@ to the SolarSoft data analysis environment.")
(define-public python-sunraster
(package
(name "python-sunraster")
- (version "0.6.0")
+ (version "0.6.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "sunraster" version))
(sha256
- (base32 "1nyrhn7if7xpl97k6nzsxymdi6b77n61xlh1il3m58rdrjyp5q81"))))
+ (base32 "0a1w7958n4m1qm59x6y00a0p45b5drnj1ippwl7gvszbwamhr2gr"))))
(build-system pyproject-build-system)
(arguments
(list
#:test-flags
#~(list "--numprocesses" (number->string (parallel-job-count))
"--ignore=docs/data_types/raster.rst"
- "--ignore=docs/data_types/spectrogram.rst"
- "-k" (string-join
- ;; XXX: Reported upstream:
- ;; <https://github.com/sunpy/sunraster/issues/281>
- (list "not test_apply_exposure_time_correction"
- "test_ndcube_components_after_slicing"
- "test_read_spice_l2_fits_multiple_files_dumbbells"
- "test_read_spice_l2_fits_multiple_rasters_multiple_windows"
- "test_read_spice_l2_fits_multiple_rasters_single_window"
- "test_read_spice_l2_fits_multiple_sns_multiple_windows"
- "test_read_spice_l2_fits_single_file_dumbbells")
- " and not "))
+ "--ignore=docs/data_types/spectrogram.rst")
#:phases
#~(modify-phases %standard-phases
(add-before 'check 'pre-check
@@ -8713,14 +8982,14 @@ to the SolarSoft data analysis environment.")
;; '/homeless-shelter'
(setenv "HOME" "/tmp"))))))
(native-inputs
- (list python-pytest
+ (list nss-certs-for-test
+ python-pytest
python-pytest-astropy
python-pytest-doctestplus
python-pytest-xdist
python-setuptools-next
python-setuptools-scm-next
- python-sunpy-minimal
- python-wheel))
+ python-sunpy-minimal))
(propagated-inputs
(list python-astropy
python-ndcube
@@ -9573,23 +9842,18 @@ deconvolution). Such post-processing is not performed by Stackistry.")
(license license:gpl3+)))
(define-public stellarium
- ;; XXX: 25.1 does not provide option to build with system MD4C, see
- ;; <https://github.com/Stellarium/stellarium/issues/4267>, using the latest
- ;; commit.
- (let ((commit "045915b9dca754f6eec1bdc311428eb3e98d1002")
- (revision "2"))
- (package
+ (package
(name "stellarium")
- (version (git-version "25.1" revision commit))
+ (version "25.2")
(source
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/Stellarium/stellarium")
- (commit commit)))
+ (url "https://github.com/Stellarium/stellarium")
+ (commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "1nrjfa1aq0inrbr66w8n8lqjkn0nsssjfl0dfrc4maynjp63gqkq"))))
+ (base32 "0fxdvybdcnlkjkyx1kqc7gg7p55qd4h1ri0mmn1xj2g5fxsbs0nr"))))
(build-system qt-build-system)
;; TODO: Complete documentation build and split into dedicated outputs.
(arguments
@@ -9598,11 +9862,11 @@ deconvolution). Such post-processing is not performed by Stackistry.")
#:tests? #f
#:configure-flags
#~(list "-DENABLE_GPS=1"
- ;; TODO: Enable when all of the dependencies are available for Qt6.
- "-DENABLE_QT6=0"
"-DENABLE_TESTING=0"
(string-append "-DCMAKE_CXX_FLAGS=-isystem "
- #$(this-package-input "qtserialport") "/include/qt5"))
+ #$(this-package-input "qtpositioning") "/include/qt6"
+ " -isystem "
+ #$(this-package-input "qtserialport") "/include/qt6"))
#:phases
#~(modify-phases %standard-phases
(add-before 'check 'set-offscreen-display
@@ -9610,24 +9874,25 @@ deconvolution). Such post-processing is not performed by Stackistry.")
(setenv "QT_QPA_PLATFORM" "offscreen")
(setenv "HOME" "/tmp"))))))
(inputs
- (list calcmysky-qt5
+ (list calcmysky
+ eigen
+ glm
gpsd
indi
libnova
md4c
nlopt
openssl
- qtbase-5
- qtcharts-5
- qtlocation-5
- qtmultimedia-5
+ qtbase
+ qtcharts
+ qtlocation
+ qtmultimedia
qtpositioning
- qtscript-5
- qtserialport-5
+ qtserialport
qttranslations
- qtwayland-5
- qtwebengine-5
- qxlsx-qt5
+ qtwayland
+ qtwebengine
+ qxlsx
zlib))
(native-inputs
(list doxygen
@@ -9636,7 +9901,7 @@ deconvolution). Such post-processing is not performed by Stackistry.")
mesa
perl
python-wrapper
- qttools-5))
+ qttools))
(home-page "https://stellarium.org/")
(synopsis "3D sky viewer")
(description
@@ -9644,7 +9909,7 @@ deconvolution). Such post-processing is not performed by Stackistry.")
3D, just like what you see with the naked eye, binoculars, or a telescope. It
can be used to control telescopes over a serial port for tracking celestial
objects.")
- (license license:gpl2+))))
+ (license license:gpl2+)))
(define-public stuff
;; XXX: No version tag available in GitHub.
@@ -9927,7 +10192,7 @@ n-body file formats (nemo, Gadget binaries 1 and 2, Gadget hdf5, Ramses).")
(define-public uraniborg
(package
(name "uraniborg")
- (version "0.0.8")
+ (version "0.0.10")
(source
(origin
(method git-fetch)
@@ -9936,23 +10201,23 @@ n-body file formats (nemo, Gadget binaries 1 and 2, Gadget hdf5, Ramses).")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0jr4sj42cg1b1n74yag1a4rbysk53s9a3qbd3sg5qaabvjs534v1"))))
+ (base32 "0bz2k2x06nyvhr9v4z6f21cf29pqsj9m4qyn8sdbl421wsqj31wg"))))
(build-system go-build-system)
(arguments
(list
- #:tests? #f ; XXX: tests require some config files which are not in Git
#:install-source? #f
#:import-path "bitbucket.org/dpnash/uraniborg"
#:phases
#~(modify-phases %standard-phases
(add-before 'build 'patch-config
- ;; TODO: This might be patched in the upstream, see
- ;; <https://codeberg.org/astronexus/uraniborg/issues/1>.
(lambda* (#:key import-path #:allow-other-keys)
(with-directory-excursion (string-append "src/" import-path)
(substitute* "consts.go"
- (("config/") (string-append #$output "/etc/uraniborg/"))
- (("data/") (string-append #$output "/share/uraniborg/data/")))
+ (("DEFAULT_BASE_DIR = \".\"") (format #f "DEFAULT_BASE_DIR = ~s" #$output))
+ (("\"config\"") (format #f "~s" "etc/uraniborg"))
+ (("\"data\"") (format #f "~s" "share/uraniborg/data"))
+ (("\"charts\"") (format #f "~s" "share/uraniborg/charts"))
+ (("\"fonts\"") (format #f "~s" "share/uraniborg/fonts")))
(substitute* (find-files "config" ".*\\.yaml$")
(("fonts/") (string-append #$output "/share/uraniborg/fonts/"))))))
(add-after 'install 'install-runtime-files
@@ -9960,11 +10225,19 @@ n-body file formats (nemo, Gadget binaries 1 and 2, Gadget hdf5, Ramses).")
(with-directory-excursion (string-append "src/" import-path)
(let ((etc (string-append #$output "/etc/uraniborg"))
(data (string-append #$output "/share/uraniborg/data"))
+ (charts (string-append #$output "/share/uraniborg/charts"))
(fonts (string-append #$output "/share/uraniborg/fonts")))
(copy-recursively "config" etc)
+ (copy-recursively "charts" charts)
(copy-recursively "fonts" fonts)
- (system* "gunzip" "data/athyg_32_subset.csv.gz")
- (install-file "data/athyg_32_subset.csv" data))))))))
+ (system* "gunzip" "data/athyg_33_subset.csv.gz")
+ (install-file "data/athyg_33_subset.csv" data)))))
+ (delete 'check)
+ (add-after 'install-runtime-files 'post-install-check
+ (lambda* (#:key tests? import-path #:allow-other-keys)
+ (when tests?
+ (with-directory-excursion (string-append "src/" import-path)
+ (invoke "go" "test" "-v" "./..."))))))))
(native-inputs
(list go-codeberg-org-astronexus-brahe
go-dario-cat-mergo
@@ -9983,7 +10256,10 @@ from the HYG catalog.
@code{uraniborg} lets you view the sky from both the solar system and from any
star in the AT-HYG catalog with a known distance (over 2.5 million stars
-currently).")
+currently).
+
+Base directory containing custom config, data, charts and fonts may be
+adjusted with command line option @code{-b}, by default set to store path.")
(license (list license:asl2.0 ;; Roboto fonts
license:silofl1.1 ;; Noto Sans fonts
license:gpl3+))))
generated by cgit v1.2.3 (git 2.50.1) at 2025-08-31 11:02:34 +0000