diff options
Diffstat (limited to 'gnu/packages/astronomy.scm')
| -rw-r--r-- | gnu/packages/astronomy.scm | 426 |
1 files changed, 213 insertions, 213 deletions
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 0112ff5ecf..745120b85c 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -436,7 +436,6 @@ rendering of the atmosphere model and examine its properties. #:configure-flags #~(list "-DBUILD_PYTHON3=ON" "-DBUILD_PYTHON=OFF" - "-DBUILD_TESTING=TRUE" "-DUSE_HDF5=ON" "-DUSE_OPENMP=OFF" "-DUSE_THREADS=ON" @@ -1361,14 +1360,16 @@ standard astronomy libraries: #:make-flags #~(list (string-append "CC=" #$(cc-for-target)) (string-append "PREFIX=" #$output)) - #:test-target "test" + #:modules '((guix build cmake-build-system) + ((guix build gnu-build-system) #:prefix gnu:) + (guix build utils)) #:phases #~(modify-phases %standard-phases - (add-before 'check 'pre-check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (chdir "../source") - (setenv "CC" #$(cc-for-target)))))))) + (replace 'check + (lambda* (#:rest args) + (with-directory-excursion "../source" + (apply (assoc-ref gnu:%standard-phases 'check) + #:test-target "test" args))))))) (native-inputs (list python-wrapper)) (home-page "https://github.com/kbarbary/sep") @@ -1966,6 +1967,50 @@ support for reading and writing various compression algorithms including: @url{http://facebook.github.io/zstd/,Zstandard}.") (license license:bsd-3)))) +(define-public python-asdf-transform-schemas + (hidden-package + (package + (name "python-asdf-transform-schemas") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "asdf_transform_schemas" version)) + (sha256 + (base32 "0clp3a2ldfhvsh5c7zqd7nr2bvv62a89aaf8p4a2vzgzjvhghl0g")))) + (build-system pyproject-build-system) + (arguments + (list + ;; XXX: Check why all tests fail in this file. + #:test-flags #~(list "--deselect=tests/test_invalid.py"))) + (native-inputs + (list python-asdf-bootstrap + python-pytest + python-setuptools-next + python-setuptools-scm + python-wheel)) + (propagated-inputs + (list python-asdf-standard)) + (home-page "https://github.com/asdf-format/asdf-transform-schemas") + (synopsis "ASDF schemas for transforms") + (description + "This package provides ASDF schemas for validating transform tags. +Users should not need to install this directly; instead, install an +implementation package such as asdf-astropy.") + (license license:bsd-3)))) + +(define-public python-asdf-transform-schemas-bootstrap + (hidden-package + (package/inherit python-asdf-transform-schemas + (arguments + (list #:tests? #f + #:phases #~(modify-phases %standard-phases + (delete 'sanity-check)))) + (native-inputs + (list python-setuptools-next + python-wheel)) + (propagated-inputs '())))) + (define-public python-asdf-zarr (package (name "python-asdf-zarr") @@ -4452,6 +4497,34 @@ semi-analytic models, to cosmological hydrodynamic simulations, and even observationally-derived galaxy merger catalogs.") (license license:expat))) +(define-public python-hvpy + (package + (name "python-hvpy") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "hvpy" version)) + (sha256 + (base32 "0bly1bgp0axxhzzf5imqsgmms41z8cxbjahxsibvb55dk94gwig6")))) + (build-system pyproject-build-system) + (arguments + (list #:tests? #f)) ; Requires HTTP(S) access to api.beta.helioviewer.org + (native-inputs + (list python-pytest + python-pytest-astropy + python-setuptools + python-wheel)) + (propagated-inputs + (list python-pydantic-2 + python-pydantic-settings + python-requests)) + (home-page "https://helioviewer.org/") + (synopsis "Helioviewer Python API Wrapper") + (description "@code{hvpy} is a Python API wrapper around the formal +@url{Helioviewer API, https://api.helioviewer.org/docs/v2/}.") + (license license:bsd-2))) + (define-public python-irispy-lmsal (package (name "python-irispy-lmsal") @@ -4661,6 +4734,89 @@ Telescope,JWST} from a set of input dark current files and a set of flat field files.") (license license:bsd-3))) +(define-public python-kanon + (package + (name "python-kanon") + (version "0.6.6") + (source + (origin + (method git-fetch) ; no release in PyPI + (uri (git-reference + (url "https://github.com/ALFA-project-erc/kanon") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0sg9yrsas5xmhbw6mhfyxsxh9i060af6v02whr9fqgv687fiyrhc")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + #~(list ;"--numprocesses" "auto" + ;; XXX: This tests failing a lot. + "-k" (string-append "not test_attribute_forwardin" + " and not test_declination" + " and not test_init_basedquantity" + " and not test_ptolemy_viz" + " and not test_ptolemy_viz" + " and not test_quantity" + " and not test_read" + " and not test_shifting" + " and not test_sun_true_position" + " and not test_sun_true_position") + "--ignore=kanon/tables/__init__.py") + #:phases + #~(modify-phases %standard-phases + ;; See <https://github.com/ALFA-project-erc/kanon/issues/149>. + (delete 'sanity-check) + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "pyproject.toml" + (("version = \"0.0.0\"") (string-append "version = \"" #$version "\"")) + ;; RuntimeError: Unable to detect version control + ;; system. Checked: Git. Not installed: Mercurial, Darcs, + ;; Subversion, Bazaar, Fossil, Pijul. See + ;; <https://github.com/blacklanternsecurity/bbot/issues/1257>. + (("enable = true") "enable = false")))) + (add-before 'check 'prepare-test-environment + (lambda _ + (setenv "HOME" "/tmp")))))) + (native-inputs + (list git-minimal/pinned + python-poetry-core + python-poetry-dynamic-versioning + python-pytest-astropy + python-pytest-xdist + python-requests-mock)) + (propagated-inputs + (list python-astropy-6 + python-matplotlib + python-numpy + python-pandas + python-requests + python-scipy + ;; Optional + python-ipykernel + python-papermill)) + (home-page "https://dishas.obspm.fr") + (synopsis "History of astronomy") + (description "This package provides a history of astronomy library. +Current Features: +@itemize +@item define standard positional numeral systems with standard arithmetics +(BasedReal) +@item set your own precision contexts and algorithms on arithmetical +operations (PrecisionContext) +@item keep track of all operations +@item build or import ancient astronomical tables +@item perform arithmetical and statistical operations +@item support for BasedReal values +@item define new calendar types +@item date conversions +@item collection of mathematical models used for all kinds of geocentric +astronomical tables +@end itemize") + (license license:bsd-3))) + (define-public python-lenstronomy (package (name "python-lenstronomy") @@ -5272,6 +5428,56 @@ position-frequency slice.") (list python-setuptools python-wheel))))) +(define-public python-pyerfa + (package + (name "python-pyerfa") + (version "2.0.1.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyerfa" version)) + (sha256 + (base32 "1h7nw61wqx9qsznnl8qandixr6c1n3f65hyqwzanav44wi7v5mhp")) + (modules '((guix build utils))) + (snippet + #~(begin + ;; Remove bundled submodule library. + (delete-file-recursively "liberfa"))))) + (build-system pyproject-build-system) + (arguments + (list + ;; Disable only one failing test: + ;; AttributeError: __warningregistry__ + ;; See https://github.com/liberfa/pyerfa/issues/126 + #:test-flags #~(list "-k" "not test_errwarn_reporting") + #:phases + #~(modify-phases %standard-phases + (add-before 'build 'use-system-liberfa + (lambda _ + (setenv "PYERFA_USE_SYSTEM_LIBERFA" "1"))) + (add-before 'check 'build-extensions + (lambda _ + (invoke "python" "setup.py" "build_ext" "--inplace")))))) + (native-inputs + (list python-pytest-doctestplus + python-pytest + python-setuptools + python-setuptools-scm + python-wheel)) + (inputs + (list erfa)) + (propagated-inputs + (list python-numpy)) + (home-page "https://github.com/liberfa/pyerfa") + (synopsis "Python bindings for ERFA") + (description + "PyERFA is the Python wrapper for the ERFA library (Essential +Routines for Fundamental Astronomy), a C library containing key algorithms for +astronomy, which is based on the SOFA library published by the International +Astronomical Union (IAU). All C routines are wrapped as Numpy universal +functions, so that they can be called with scalar or array inputs.") + (license license:bsd-3))) + (define-public python-pyhalo (package (name "python-pyhalo") @@ -6185,34 +6391,6 @@ instruments.") (license (list license:bsd-3 ; licenses/LICENSE.rst, same as python-astropy license:expat)))) ; licenses/KOSMOS_LICENSE -(define-public python-hvpy - (package - (name "python-hvpy") - (version "1.1.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "hvpy" version)) - (sha256 - (base32 "0bly1bgp0axxhzzf5imqsgmms41z8cxbjahxsibvb55dk94gwig6")))) - (build-system pyproject-build-system) - (arguments - (list #:tests? #f)) ; Requires HTTP(S) access to api.beta.helioviewer.org - (native-inputs - (list python-pytest - python-pytest-astropy - python-setuptools - python-wheel)) - (propagated-inputs - (list python-pydantic-2 - python-pydantic-settings - python-requests)) - (home-page "https://helioviewer.org/") - (synopsis "Helioviewer Python API Wrapper") - (description "@code{hvpy} is a Python API wrapper around the formal -@url{Helioviewer API, https://api.helioviewer.org/docs/v2/}.") - (license license:bsd-2))) - (define-public python-jplephem (package (name "python-jplephem") @@ -6247,89 +6425,6 @@ Astronomical Almanac to within 0.0005 arcseconds (half a @emph{mas} or milliarcsecond).") (license license:expat))) -(define-public python-kanon - (package - (name "python-kanon") - (version "0.6.6") - (source - (origin - (method git-fetch) ; no release in PyPI - (uri (git-reference - (url "https://github.com/ALFA-project-erc/kanon") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0sg9yrsas5xmhbw6mhfyxsxh9i060af6v02whr9fqgv687fiyrhc")))) - (build-system pyproject-build-system) - (arguments - (list - #:test-flags - #~(list ;"--numprocesses" "auto" - ;; XXX: This tests failing a lot. - "-k" (string-append "not test_attribute_forwardin" - " and not test_declination" - " and not test_init_basedquantity" - " and not test_ptolemy_viz" - " and not test_ptolemy_viz" - " and not test_quantity" - " and not test_read" - " and not test_shifting" - " and not test_sun_true_position" - " and not test_sun_true_position") - "--ignore=kanon/tables/__init__.py") - #:phases - #~(modify-phases %standard-phases - ;; See <https://github.com/ALFA-project-erc/kanon/issues/149>. - (delete 'sanity-check) - (add-after 'unpack 'relax-requirements - (lambda _ - (substitute* "pyproject.toml" - (("version = \"0.0.0\"") (string-append "version = \"" #$version "\"")) - ;; RuntimeError: Unable to detect version control - ;; system. Checked: Git. Not installed: Mercurial, Darcs, - ;; Subversion, Bazaar, Fossil, Pijul. See - ;; <https://github.com/blacklanternsecurity/bbot/issues/1257>. - (("enable = true") "enable = false")))) - (add-before 'check 'prepare-test-environment - (lambda _ - (setenv "HOME" "/tmp")))))) - (native-inputs - (list git-minimal/pinned - python-poetry-core - python-poetry-dynamic-versioning - python-pytest-astropy - python-pytest-xdist - python-requests-mock)) - (propagated-inputs - (list python-astropy-6 - python-matplotlib - python-numpy - python-pandas - python-requests - python-scipy - ;; Optional - python-ipykernel - python-papermill)) - (home-page "https://dishas.obspm.fr") - (synopsis "History of astronomy") - (description "This package provides a history of astronomy library. -Current Features: -@itemize -@item define standard positional numeral systems with standard arithmetics -(BasedReal) -@item set your own precision contexts and algorithms on arithmetical -operations (PrecisionContext) -@item keep track of all operations -@item build or import ancient astronomical tables -@item perform arithmetical and statistical operations -@item support for BasedReal values -@item define new calendar types -@item date conversions -@item collection of mathematical models used for all kinds of geocentric -astronomical tables -@end itemize") - (license license:bsd-3))) - (define-public python-photutils (package (name "python-photutils") @@ -7210,56 +7305,6 @@ science instruments plus the fine guidance sensor, including both direct imaging, coronagraphic, and spectroscopic modes.") (license license:bsd-3))) -(define-public python-pyerfa - (package - (name "python-pyerfa") - (version "2.0.1.5") - (source - (origin - (method url-fetch) - (uri (pypi-uri "pyerfa" version)) - (sha256 - (base32 "1h7nw61wqx9qsznnl8qandixr6c1n3f65hyqwzanav44wi7v5mhp")) - (modules '((guix build utils))) - (snippet - #~(begin - ;; Remove bundled submodule library. - (delete-file-recursively "liberfa"))))) - (build-system pyproject-build-system) - (arguments - (list - ;; Disable only one failing test: - ;; AttributeError: __warningregistry__ - ;; See https://github.com/liberfa/pyerfa/issues/126 - #:test-flags #~(list "-k" "not test_errwarn_reporting") - #:phases - #~(modify-phases %standard-phases - (add-before 'build 'use-system-liberfa - (lambda _ - (setenv "PYERFA_USE_SYSTEM_LIBERFA" "1"))) - (add-before 'check 'build-extensions - (lambda _ - (invoke "python" "setup.py" "build_ext" "--inplace")))))) - (native-inputs - (list python-pytest-doctestplus - python-pytest - python-setuptools - python-setuptools-scm - python-wheel)) - (inputs - (list erfa)) - (propagated-inputs - (list python-numpy)) - (home-page "https://github.com/liberfa/pyerfa") - (synopsis "Python bindings for ERFA") - (description - "PyERFA is the Python wrapper for the ERFA library (Essential -Routines for Fundamental Astronomy), a C library containing key algorithms for -astronomy, which is based on the SOFA library published by the International -Astronomical Union (IAU). All C routines are wrapped as Numpy universal -functions, so that they can be called with scalar or array inputs.") - (license license:bsd-3))) - (define-public python-pynbody (package (name "python-pynbody") @@ -7627,50 +7672,6 @@ and use. Unlike FITS, the metadata is highly structured and is designed up-front for extensibility.") (license license:bsd-3))) -(define-public python-asdf-transform-schemas - (hidden-package - (package - (name "python-asdf-transform-schemas") - (version "0.6.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "asdf_transform_schemas" version)) - (sha256 - (base32 "0clp3a2ldfhvsh5c7zqd7nr2bvv62a89aaf8p4a2vzgzjvhghl0g")))) - (build-system pyproject-build-system) - (arguments - (list - ;; XXX: Check why all tests fail in this file. - #:test-flags #~(list "--deselect=tests/test_invalid.py"))) - (native-inputs - (list python-asdf-bootstrap - python-pytest - python-setuptools-next - python-setuptools-scm - python-wheel)) - (propagated-inputs - (list python-asdf-standard)) - (home-page "https://github.com/asdf-format/asdf-transform-schemas") - (synopsis "ASDF schemas for transforms") - (description - "This package provides ASDF schemas for validating transform tags. -Users should not need to install this directly; instead, install an -implementation package such as asdf-astropy.") - (license license:bsd-3)))) - -(define-public python-asdf-transform-schemas-bootstrap - (hidden-package - (package/inherit python-asdf-transform-schemas - (arguments - (list #:tests? #f - #:phases #~(modify-phases %standard-phases - (delete 'sanity-check)))) - (native-inputs - (list python-setuptools-next - python-wheel)) - (propagated-inputs '())))) - (define-public python-asdf-coordinates-schemas (hidden-package (package @@ -9602,7 +9603,6 @@ deconvolution). Such post-processing is not performed by Stackistry.") (list ;; FIXME: Tests keep failing on 100% when preparing test-suit for INDI. #:tests? #f - #:test-target "test" #:configure-flags #~(list "-DENABLE_GPS=1" ;; TODO: Enable when all of the dependencies are available for Qt6. |