diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 9 |
1 files changed, 7 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4ca7998cc7..e14d74b186 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12324,7 +12324,7 @@ of these reads to align data quickly through a hash-based indexing scheme.") (define-public sortmerna (package (name "sortmerna") - (version "4.3.4") + (version "4.3.7") (source (origin (method git-fetch) @@ -12334,7 +12334,7 @@ of these reads to align data quickly through a hash-based indexing scheme.") (file-name (git-file-name name version)) (sha256 (base32 - "0f8jfc8vsq6llhbb92p9yv7nbp566yqwfcmq3g2hw0n7d8hyl3a8")))) + "14p3zi6ysnrs2l33r5mc0fr0la2jnnxmqdcif02fppln8w31j753")))) (build-system cmake-build-system) (outputs '("out" ;for binaries "db")) ;for sequence databases @@ -12359,6 +12359,11 @@ of these reads to align data quickly through a hash-based indexing scheme.") "/include")) #:phases '(modify-phases %standard-phases + (add-after 'unpack 'fix-includes + (lambda _ + (substitute* "src/sortmerna/kseq_load.cpp" + (("#include <iostream>" all) + (string-append all "\n#include <cstdint>"))))) (add-after 'unpack 'find-concurrentqueue-headers (lambda* (#:key inputs #:allow-other-keys) ;; Ensure that headers can be found |