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-rw-r--r--gnu/packages/irods.scm268
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diff --git a/gnu/packages/irods.scm b/gnu/packages/irods.scm
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--- a/gnu/packages/irods.scm
+++ /dev/null
@@ -1,268 +0,0 @@
-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2021 Ricardo Wurmus <rekado@elephly.net>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
-
-(define-module (gnu packages irods)
- #:use-module ((guix licenses) #:prefix license:)
- #:use-module (guix packages)
- #:use-module (guix download)
- #:use-module (guix git-download)
- #:use-module (guix build-system cmake)
- #:use-module (guix utils)
- #:use-module (gnu packages)
- #:use-module (gnu packages backup)
- #:use-module (gnu packages base)
- #:use-module (gnu packages boost)
- #:use-module (gnu packages check)
- #:use-module (gnu packages compression)
- #:use-module (gnu packages cpp)
- #:use-module (gnu packages databases)
- #:use-module (gnu packages gcc)
- #:use-module (gnu packages kerberos)
- #:use-module (gnu packages linux)
- #:use-module (gnu packages llvm)
- #:use-module (gnu packages logging)
- #:use-module (gnu packages man)
- #:use-module (gnu packages networking)
- #:use-module (gnu packages pretty-print)
- #:use-module (gnu packages python)
- #:use-module (gnu packages serialization)
- #:use-module (gnu packages tls)
- #:use-module (srfi srfi-1))
-
-(define-public irods
- (package
- (name "irods")
- (version "4.2.8")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://github.com/irods/irods/releases/download/"
- version "/irods-" version ".tar.gz"))
- (sha256
- (base32
- "0ny54c3r0j692rvbr4iibg7xgd2i7g9x8yyrw04j889bywix14rc"))))
- (build-system cmake-build-system)
- (arguments
- `(#:configure-flags
- (list
- "-DCMAKE_BUILD_TYPE=Release"
- (string-append "-DCMAKE_MODULE_LINKER_FLAGS=-Wl,-rpath="
- (assoc-ref %outputs "out") "/lib")
- (string-append "-DCMAKE_SHARED_LINKER_FLAGS=-Wl,-rpath="
- (assoc-ref %outputs "out") "/lib")
- (string-append "-DCMAKE_EXE_LINKER_FLAGS=-Wl,-rpath="
- (assoc-ref %outputs "out") "/lib")
-
- ;; Configuration aborts if no generator format is set
- "-DCPACK_GENERATOR=TGZ"
-
- ;; Configuration attempts to guess the distribution with Python.
- "-DIRODS_LINUX_DISTRIBUTION_NAME=guix"
- "-DIRODS_LINUX_DISTRIBUTION_VERSION_MAJOR=1"
-
- (string-append "-DIRODS_EXTERNALS_FULLPATH_CLANG="
- (assoc-ref %build-inputs "clang"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_CLANG_RUNTIME="
- (assoc-ref %build-inputs "clang-runtime"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_CPPZMQ="
- (assoc-ref %build-inputs "cppzmq"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_ARCHIVE="
- (assoc-ref %build-inputs "libarchive"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_AVRO="
- (assoc-ref %build-inputs "avro-cpp"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_BOOST="
- (assoc-ref %build-inputs "boost"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_ZMQ="
- (assoc-ref %build-inputs "zeromq"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_JSON="
- (assoc-ref %build-inputs "json"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_CATCH2="
- (assoc-ref %build-inputs "catch2"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_NANODBC="
- (assoc-ref %build-inputs "nanodbc"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_FMT="
- (assoc-ref %build-inputs "fmt")))
-
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'unset-Werror
- (lambda _
- ;; -Werror kills the build due to a comparison REQUIRE(errs.size() == err->len);
- ;; in unit_tests/src/test_irods_lifetime_manager.cpp
- (substitute* "CMakeLists.txt"
- (("-Werror") ""))))
- (add-after 'unpack 'remove-FHS-and-prefix-assumptions
- (lambda* (#:key inputs #:allow-other-keys)
- (substitute* '("CMakeLists.txt"
- "cmake/server.cmake"
- "cmake/development_library.cmake"
- "cmake/runtime_library.cmake")
- (("usr/") ""))
- (substitute* "lib/core/src/irods_default_paths.cpp"
- (("path.append\\(\"usr\"\\)") "path")
- (("path.remove_filename\\(\\).remove_filename\\(\\).remove_filename\\(\\)")
- "path.remove_filename().remove_filename()"))
- (substitute* "scripts/irods/paths.py"
- (("'usr', 'lib', 'irods'") "'lib', 'irods'"))
- (substitute* "scripts/irods/pypyodbc.py"
- (("\"/usr/lib/libodbc.so\"")
- (search-input-file inputs "/lib/libodbc.so")))))
- (add-after 'set-paths 'adjust-CPLUS_INCLUDE_PATH
- (lambda* (#:key inputs #:allow-other-keys)
- (let ((gcc (assoc-ref inputs "gcc")))
- (setenv "CPLUS_INCLUDE_PATH"
- (string-join
- (cons* (search-input-directory inputs "/include/c++/v1")
- (search-input-directory inputs "/include/catch2")
- (search-input-directory inputs "/include/nlohmann")
- ;; Hide GCC's C++ headers so that they do not interfere with
- ;; the Clang headers.
- (delete (string-append gcc "/include/c++")
- (string-split (getenv "CPLUS_INCLUDE_PATH")
- #\:)))
- ":"))
- (format #true
- "environment variable `CPLUS_INCLUDE_PATH' changed to ~a~%"
- (getenv "CPLUS_INCLUDE_PATH"))))))))
- (inputs
- `(("avro-cpp" ,avro-cpp-1.9-for-irods)
- ("boost" ,boost-for-irods)
- ("cppzmq" ,cppzmq)
- ("fmt" ,fmt-6)
- ("json" ,nlohmann-json)
- ("libarchive" ,libarchive)
- ("libcxxabi" ,libcxxabi-6) ; we need this for linking with -lc++abi
- ("linux-pam" ,linux-pam)
- ("mit-krb5" ,mit-krb5)
- ("nanodbc" ,nanodbc-for-irods)
- ("openssl" ,openssl)
- ("python" ,python-wrapper)
- ("unixodbc" ,unixodbc)
- ("zeromq" ,zeromq)))
- (native-inputs
- `(("catch2" ,catch2)
- ("clang" ,clang-toolchain-6)
- ("clang-runtime" ,clang-runtime-6)
- ("libcxx+libcxxabi" ,libcxx+libcxxabi-6)))
- (home-page "https://irods.org")
- (synopsis "Data management software")
- (description "The Integrated Rule-Oriented Data System (iRODS) is data
-management software. iRODS virtualizes data storage resources, so users can
-take control of their data, regardless of where and on what device the data is
-stored.")
- (license license:bsd-3)))
-
-(define-public irods-client-icommands
- (package
- (name "irods-client-icommands")
- (version "4.2.8")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/irods/irods_client_icommands")
- (commit version)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "069n647p5ypf44gim8z26mwayg5lzgk7r9qyyqd8f9n7h0p4jxpn"))))
- (build-system cmake-build-system)
- (arguments
- `(#:tests? #false ; not clear how to run tests
- #:configure-flags
- (list
- "-DCMAKE_BUILD_TYPE=Release"
-
- ;; Configuration attempts to guess the distribution with Python.
- "-DIRODS_LINUX_DISTRIBUTION_NAME=guix"
- "-DIRODS_LINUX_DISTRIBUTION_VERSION_MAJOR=1"
-
- (string-append "-DIRODS_DIR="
- (assoc-ref %build-inputs "irods")
- "/lib/irods/cmake")
- (string-append "-DIRODS_EXTERNALS_FULLPATH_CLANG="
- (assoc-ref %build-inputs "clang"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_CLANG_RUNTIME="
- (assoc-ref %build-inputs "clang-runtime"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_CPPZMQ="
- (assoc-ref %build-inputs "cppzmq"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_ARCHIVE="
- (assoc-ref %build-inputs "libarchive"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_AVRO="
- (assoc-ref %build-inputs "avro-cpp"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_BOOST="
- (assoc-ref %build-inputs "boost"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_ZMQ="
- (assoc-ref %build-inputs "zeromq"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_JSON="
- (assoc-ref %build-inputs "json"))
- (string-append "-DIRODS_EXTERNALS_FULLPATH_FMT="
- (assoc-ref %build-inputs "fmt")))
-
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'unset-Werror ;
- (lambda _ ;
- ;; -Werror kills the build due to a deprecation warning
- (substitute* "CMakeLists.txt" ;
- (("-Werror") ""))))
- (add-after 'unpack 'remove-/usr-prefix
- (lambda _
- (substitute* "CMakeLists.txt"
- (("usr/") ""))))
- (add-after 'set-paths 'adjust-CPLUS_INCLUDE_PATH
- (lambda* (#:key inputs #:allow-other-keys)
- (let ((gcc (assoc-ref inputs "gcc")))
- (setenv "CPLUS_INCLUDE_PATH"
- (string-join
- (cons* (search-input-directory inputs
- "include/c++/v1")
- (search-input-directory inputs
- "include/nlohmann")
- ;; Hide GCC's C++ headers so that they do not interfere with
- ;; the Clang headers.
- (delete (string-append gcc "/include/c++")
- (string-split (getenv "CPLUS_INCLUDE_PATH")
- #\:)))
- ":"))
- (format #true
- "environment variable `CPLUS_INCLUDE_PATH' changed to ~a~%"
- (getenv "CPLUS_INCLUDE_PATH"))))))))
- (inputs
- `(("avro-cpp" ,avro-cpp-1.9-for-irods)
- ("boost" ,boost-for-irods)
- ("cppzmq" ,cppzmq)
- ("fmt" ,fmt-6)
- ("irods" ,irods)
- ("json" ,nlohmann-json)
- ("libarchive" ,libarchive)
- ("libcxxabi" ,libcxxabi-6) ; we need this for linking with -lc++abi
- ("mit-krb5" ,mit-krb5)
- ("openssl" ,openssl)
- ("zeromq" ,zeromq)))
- (native-inputs
- `(("clang" ,clang-toolchain-6)
- ("clang-runtime" ,clang-runtime-6)
- ("libcxx+libcxxabi" ,libcxx+libcxxabi-6)
- ("help2man" ,help2man)
- ("which" ,which)))
- (home-page "https://irods.org")
- (synopsis "Data management software")
- (description "The Integrated Rule-Oriented Data System (iRODS) is data
-management software. iRODS virtualizes data storage resources, so users can
-take control of their data, regardless of where and on what device the data is
-stored.")
- (license license:bsd-3)))
generated by cgit v1.2.3 (git 2.50.1) at 2025-10-17 12:43:32 +0000