diff options
Diffstat (limited to 'gnu/packages/machine-learning.scm')
| -rw-r--r-- | gnu/packages/machine-learning.scm | 79 |
1 files changed, 7 insertions, 72 deletions
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 4f3f740745..13890adfb3 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -1703,11 +1703,11 @@ an extensible computation graph model, as well as definitions of built-in operators and standard data types.") (license license:expat))) -(define-public python-onnx - ;; This used to be called "python-onnx" because it provided nothing but - ;; Python bindings. The package now provides shared libraries and C++ - ;; headers, hence the name change. - (deprecated-package "python-onnx" onnx)) +;; This used to be called "python-onnx" because it provided nothing but +;; Python bindings. The package now provides shared libraries and C++ +;; headers, hence the name change. +(define-deprecated-package python-onnx + onnx) (define-public onnx-optimizer (package @@ -2117,7 +2117,7 @@ computing environments.") (native-inputs (list gfortran meson-python - python-cython-3 + python-cython python-pandas python-pytest python-pytest-xdist)) @@ -2176,71 +2176,6 @@ data analysis.") ;; (<...>/_cython_blas.cpython-311-x86_64-linux-gnu.so) (delete-file-recursively "sklearn/utils/tests/test_cython_blas.py"))))))))) -(define-public python-scikit-learn-extra - ;; This commit fixes an incompatibility with newer versions of scikit-learn - (let ((commit "0f95d8dda4c69f9de4fb002366041adcb1302f3b") - (revision "1")) - (package - (name "python-scikit-learn-extra") - (version (git-version "0.3.0" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/scikit-learn-contrib/scikit-learn-extra") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0a248sff1psfwzmngj465gzyisq20d83nzpwpq2cspxhih51m6j9")))) - (build-system pyproject-build-system) - (arguments - (list - #:test-flags - ;; ignore tests that require network - '(list "--pyargs" "sklearn_extra" - "-k" (string-append "not test_build" - ;; The error message format has changed, - ;; but the behavior itself is still the - ;; same. - " and not test_parameter_validation" - ;; exceptions must be derived from Warning, - ;; not <class 'NoneType'> - " and not test_seuclidean")) - #:phases - #~(modify-phases %standard-phases - (add-after 'build 'build-ext - (lambda _ - (invoke "python" "setup.py" "build_ext" - "--inplace"))) - (replace 'check - (lambda* (#:key tests? test-flags #:allow-other-keys) - (when tests? - ;; Restrict OpenBLAS threads to prevent segfaults while testing! - (setenv "OPENBLAS_NUM_THREADS" "1") - - ;; Some tests require write access to $HOME. - (setenv "HOME" "/tmp") - - ;; Step out of the source directory to avoid interference; - ;; we want to run the installed code with extensions etc. - (with-directory-excursion "/tmp" - (apply invoke "pytest" "-vv" test-flags)))))))) - (propagated-inputs - (list python-numpy - python-scikit-learn - python-scipy - python-packaging)) - (native-inputs (list python-pytest python-pytest-cov python-cython - python-setuptools python-wheel)) - (home-page "https://github.com/scikit-learn-contrib/scikit-learn-extra") - (synopsis "Set of tools for scikit-learn") - (description - "This package provides a Python module for machine learning that extends -scikit-learn. It includes algorithms that are useful but do not satisfy the -scikit-learn inclusion criteria, for instance due to their novelty or lower -citation number.") - (license license:bsd-3)))) - (define-public python-mord (package (name "python-mord") @@ -2425,7 +2360,7 @@ for k-neighbor-graph construction and approximate nearest neighbor search.") (setenv "NUMBA_CACHE_DIR" "/tmp") ;; Rebuild extensions to run tests. (invoke "python" "setup.py" "build_ext" "--inplace")))))) - (native-inputs (list python-cython-3 python-pytest python-setuptools + (native-inputs (list python-cython python-pytest python-setuptools python-wheel)) (inputs (list fftw)) (propagated-inputs (list python-numpy python-pynndescent |